11-116720011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720011
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720011
    reference: chr 11
allele count: 1
allele frequency: 8.268152729317216e-6
allele num: 120946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5995C>T
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-12G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-12G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23555
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-116720014-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720014
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720014
    reference: chr 11
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5992C>G
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-15G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-15G>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/11-116720015-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720015
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720015
    reference: chr 11
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-16T>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5991A>C
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-16T>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33342
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-116720017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720017
    reference: chr 11
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5989A>G
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-18T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-18T>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

11-116720021-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720021
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720021
    reference: chr 11
allele count: 764
allele frequency: 6.327646181878416e-3
allele num: 120740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5985G>C
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-22C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-22C>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22516
  bin: 2.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 4.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 3.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 11050
  bin: 3.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8243
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 20
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-116720023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720023
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720023
    reference: chr 11
allele count: 3
allele frequency: 2.485171808211008e-5
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-24C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5983G>A
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-24C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

11-116720024-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720024
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720024
    reference: chr 11
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5982T>G
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-25A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-25A>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

11-116720030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720030
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720030
    reference: chr 11
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5976G>A
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-31C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-31C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

11-116720031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720031
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720031
    reference: chr 11
allele count: 1
allele frequency: 8.291598951941893e-6
allele num: 120604
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-32C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5975G>A
  variant of: http://identifiers.org/hgnc/40079
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-116720033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720033
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720033
    reference: chr 11
allele count: 2
allele frequency: 1.66021948101539e-5
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5973C>T
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-34G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-34G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-116720034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720034
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720034
    reference: chr 11
allele count: 753
allele frequency: 6.250933904467799e-3
allele num: 120462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5972G>A
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-35C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-35C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19709
  bin: 2.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 2.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 131
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 3
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-116720038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720038
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720038
    reference: chr 11
allele count: 1
allele frequency: 8.310203267571925e-6
allele num: 120334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-39G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5968C>T
  variant of: http://identifiers.org/hgnc/40079
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

11-116720050-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116720050
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116720050
    reference: chr 11
allele count: 4
allele frequency: 3.347560465310905e-5
allele num: 119490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2774-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1525-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3338-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000235910
  ensembl transcript: ENST00000444200
  gene symbol: APOA1-AS
  hgvsc: ENST00000444200.1:n.124-5956C>G
  variant of: http://identifiers.org/hgnc/40079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3332-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3636-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2856-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3512-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1343-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2855-51G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3158-51G>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16737
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/11-116728438-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728438
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728438
    reference: chr 11
allele count: 1
allele frequency: 2.97938267191038e-5
allele num: 33564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1429G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+88G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+88G>T
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-116728457-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728457
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728457
    reference: chr 11
allele count: 1
allele frequency: 2.236235967619303e-5
allele num: 44718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1410T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+69T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+69T>C
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-116728457-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728457
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728456
    reference: chr 11
allele count: 1
allele frequency: 2.236235967619303e-5
allele num: 44718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1409delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+68delC
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+68delC
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: AG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

11-116728459-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728459
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728459
    reference: chr 11
allele count: 2
allele frequency: 4.253690076141052e-5
allele num: 47018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1408T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+67T>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+67T>A
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12449
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-116728460-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728460
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728460
    reference: chr 11
allele count: 4
allele frequency: 8.349684799398822e-5
allele num: 47906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1407A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+66A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+66A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

11-116728466-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728466
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728466
    reference: chr 11
allele count: 3
allele frequency: 5.211228460255697e-5
allele num: 57568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1401A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+60A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+60A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18794
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-116728470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728470
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728470
    reference: chr 11
allele count: 1
allele frequency: 1.535815210713847e-5
allele num: 65112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1397C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+56C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+56C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-116728477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728477
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728477
    reference: chr 11
allele count: 7
allele frequency: 8.875364523900088e-5
allele num: 78870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1390A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+49A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+49A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29071
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

11-116728486-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728486
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728486
    reference: chr 11
allele count: 4
allele frequency: 4.360623569170392e-5
allele num: 91730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1381C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+40C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+40C>G
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34197
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

11-116728489-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728489
    reference: chr 11
allele count: 1
allele frequency: 1.031119176754449e-5
allele num: 96982
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1378C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+37C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+37C>A
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-116728493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728493
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728493
    reference: chr 11
allele count: 20
allele frequency: 1.955034213098729e-4
allele num: 102300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1374C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+33C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+33C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38505
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-116728505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728505
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728505
    reference: chr 11
allele count: 1
allele frequency: 8.895530885283234e-6
allele num: 112416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1362G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+21G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+21G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5572
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

11-116728511-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728511
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728511
    reference: chr 11
allele count: 1
allele frequency: 8.636622735045688e-6
allele num: 115786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1356A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+15A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+15A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-116728515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728515
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728515
    reference: chr 11
allele count: 3
allele frequency: 2.561212990472288e-5
allele num: 117132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1352C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+11C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+11C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

11-116728515-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728515
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728515
    reference: chr 11
allele count: 2
allele frequency: 1.707475326981525e-5
allele num: 117132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1352C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+11C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+11C>G
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-116728517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728517
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728517
    reference: chr 11
allele count: 66
allele frequency: 5.608620279411265e-4
allele num: 117676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1350C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+9C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+9C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43058
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 9.75e1
  variant carriers: 66
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-116728523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728523
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728523
    reference: chr 11
allele count: 1
allele frequency: 8.396587626788473e-6
allele num: 119096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3157+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3337+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1524+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2773+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3511+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3635+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1342+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2854+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3331+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2855+3A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1344A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3337+3A>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-116728531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728531
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728531
    reference: chr 11
allele count: 31
allele frequency: 2.578434308147852e-4
allele num: 120228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1337G>A
  hgvsp: ENSP00000364437.1:p.Ser446Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3506G>A
  hgvsp: ENSP00000364449.1:p.Ser1169Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3152G>A
  hgvsp: ENSP00000438108.1:p.Ser1051Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3630G>A
  hgvsp: ENSP00000391295.1:p.Ser1211Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2850G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3326G>A
  hgvsp: ENSP00000390442.2:p.Ser1109Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2768G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1519G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3332G>A
  hgvsp: ENSP00000292055.3:p.Ser1111Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1336G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2849G>A
  hgvsp: ENSP00000415873.2:p.Ser950Asn
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser1111Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

11-116728532-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728532
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728532
    reference: chr 11
allele count: 1
allele frequency: 8.305233958440609e-6
allele num: 120406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3151A>C
  hgvsp: ENSP00000438108.1:p.Ser1051Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2767A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3325A>C
  hgvsp: ENSP00000390442.2:p.Ser1109Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1335A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1336A>C
  hgvsp: ENSP00000364437.1:p.Ser446Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3505A>C
  hgvsp: ENSP00000364449.1:p.Ser1169Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3331A>C
  hgvsp: ENSP00000292055.3:p.Ser1111Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1518A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2848A>C
  hgvsp: ENSP00000415873.2:p.Ser950Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3629A>C
  hgvsp: ENSP00000391295.1:p.Ser1211Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2849A>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1111Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

11-116728539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728539
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728539
    reference: chr 11
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2842G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3498G>A
  hgvsp: ENST00000375300.1:c.3498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3324G>A
  hgvsp: ENST00000292055.4:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1329G>A
  hgvsp: ENST00000375288.1:c.1329G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2760G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1328G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2841G>A
  hgvsp: ENST00000434315.2:c.2841G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1511G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3144G>A
  hgvsp: ENST00000542607.1:c.3144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3318G>A
  hgvsp: ENST00000446921.2:c.3318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3622G>A
  hgvsp: ENST00000445177.1:c.3622G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1108Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

11-116728562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728562
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728562
    reference: chr 11
allele count: 4
allele frequency: 3.296739524610161e-5
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3599A>G
  hgvsp: ENSP00000391295.1:p.Thr1201Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2737A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3295A>G
  hgvsp: ENSP00000390442.2:p.Thr1099Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2819A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3301A>G
  hgvsp: ENSP00000292055.3:p.Thr1101Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1488A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3475A>G
  hgvsp: ENSP00000364449.1:p.Thr1159Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2818A>G
  hgvsp: ENSP00000415873.2:p.Thr940Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1306A>G
  hgvsp: ENSP00000364437.1:p.Thr436Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3121A>G
  hgvsp: ENSP00000438108.1:p.Thr1041Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1305A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1101Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-116728566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728566
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728566
    reference: chr 11
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3291G>A
  hgvsp: ENST00000446921.2:c.3291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1302G>A
  hgvsp: ENST00000375288.1:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2815G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3595G>A
  hgvsp: ENST00000445177.1:c.3595G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3297G>A
  hgvsp: ENST00000292055.4:c.3297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3471G>A
  hgvsp: ENST00000375300.1:c.3471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2733G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1301G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1484G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3117G>A
  hgvsp: ENST00000542607.1:c.3117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2814G>A
  hgvsp: ENST00000434315.2:c.2814G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln1099Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-116728570-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728570
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728570
    reference: chr 11
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1480A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2811A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3287A>G
  hgvsp: ENSP00000390442.2:p.His1096Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3293A>G
  hgvsp: ENSP00000292055.3:p.His1098Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2729A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2810A>G
  hgvsp: ENSP00000415873.2:p.His937Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1298A>G
  hgvsp: ENSP00000364437.1:p.His433Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3467A>G
  hgvsp: ENSP00000364449.1:p.His1156Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3591A>G
  hgvsp: ENSP00000391295.1:p.His1198Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3113A>G
  hgvsp: ENSP00000438108.1:p.His1038Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1297A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1098Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-116728585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728585
    reference: chr 11
allele count: 4
allele frequency: 3.295435821387378e-5
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2795T>C
  hgvsp: ENSP00000415873.2:p.Ile932Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3272T>C
  hgvsp: ENSP00000390442.2:p.Ile1091Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3452T>C
  hgvsp: ENSP00000364449.1:p.Ile1151Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1283T>C
  hgvsp: ENSP00000364437.1:p.Ile428Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2796T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3576T>C
  hgvsp: ENSP00000391295.1:p.Ile1193Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1465T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1282T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2714T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3278T>C
  hgvsp: ENSP00000292055.3:p.Ile1093Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3098T>C
  hgvsp: ENSP00000438108.1:p.Ile1033Thr
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile1093Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

11-116728587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728587
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728587
    reference: chr 11
allele count: 5
allele frequency: 4.119294776734223e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2793G>A
  hgvsp: ENST00000434315.2:c.2793G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3270G>A
  hgvsp: ENST00000446921.2:c.3270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3450G>A
  hgvsp: ENST00000375300.1:c.3450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3574G>A
  hgvsp: ENST00000445177.1:c.3574G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1463G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1281G>A
  hgvsp: ENST00000375288.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2794G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3096G>A
  hgvsp: ENST00000542607.1:c.3096G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3276G>A
  hgvsp: ENST00000292055.4:c.3276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2712G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1280G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly1092Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-116728589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728589
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728589
    reference: chr 11
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3274G>A
  hgvsp: ENSP00000292055.3:p.Gly1092Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3268G>A
  hgvsp: ENSP00000390442.2:p.Gly1090Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1461G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3448G>A
  hgvsp: ENSP00000364449.1:p.Gly1150Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2792G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3572G>A
  hgvsp: ENSP00000391295.1:p.Gly1192Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1279G>A
  hgvsp: ENSP00000364437.1:p.Gly427Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3094G>A
  hgvsp: ENSP00000438108.1:p.Gly1032Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2791G>A
  hgvsp: ENSP00000415873.2:p.Gly931Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2710G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1278G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1092Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ

11-116728592-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728592
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728592
    reference: chr 11
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3091T>C
  hgvsp: ENST00000542607.1:c.3091T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3271T>C
  hgvsp: ENST00000292055.4:c.3271T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2789T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3445T>C
  hgvsp: ENST00000375300.1:c.3445T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1276T>C
  hgvsp: ENST00000375288.1:c.1276T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1458T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2788T>C
  hgvsp: ENST00000434315.2:c.2788T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3265T>C
  hgvsp: ENST00000446921.2:c.3265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1275T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2707T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3569T>C
  hgvsp: ENST00000445177.1:c.3569T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1091Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

11-116728618-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728618
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728618
    reference: chr 11
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2763T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1250T>C
  hgvsp: ENSP00000364437.1:p.Leu417Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2762T>C
  hgvsp: ENSP00000415873.2:p.Leu921Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2681T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3419T>C
  hgvsp: ENSP00000364449.1:p.Leu1140Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3543T>C
  hgvsp: ENSP00000391295.1:p.Leu1182Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3239T>C
  hgvsp: ENSP00000390442.2:p.Leu1080Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3065T>C
  hgvsp: ENSP00000438108.1:p.Leu1022Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1432T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3245T>C
  hgvsp: ENSP00000292055.3:p.Leu1082Pro
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1249T>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1082Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-116728626-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728626
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728626
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3411A>G
  hgvsp: ENST00000375300.1:c.3411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2673A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2755A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3231A>G
  hgvsp: ENST00000446921.2:c.3231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1241A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1424A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3057A>G
  hgvsp: ENST00000542607.1:c.3057A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1242A>G
  hgvsp: ENST00000375288.1:c.1242A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3535A>G
  hgvsp: ENST00000445177.1:c.3535A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3237A>G
  hgvsp: ENST00000292055.4:c.3237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2754A>G
  hgvsp: ENST00000434315.2:c.2754A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu1079Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

11-116728630-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728630
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728630
    reference: chr 11
allele count: 22697
allele frequency: 1.870005108178028e-1
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2750C>G
  hgvsp: ENSP00000415873.2:p.Pro917Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3407C>G
  hgvsp: ENSP00000364449.1:p.Pro1136Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1238C>G
  hgvsp: ENSP00000364437.1:p.Pro413Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3053C>G
  hgvsp: ENSP00000438108.1:p.Pro1018Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2751C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3227C>G
  hgvsp: ENSP00000390442.2:p.Pro1076Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3531C>G
  hgvsp: ENSP00000391295.1:p.Pro1178Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1237C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2669C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1420C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3233C>G
  hgvsp: ENSP00000292055.3:p.Pro1078Arg
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 8.75e1
  variant carriers: 1627
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 8.25e1
  variant carriers: 1797
genotype depth: GenotypeDepth
  all individuals: 29127
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 7.25e1
  variant carriers: 1876
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 561
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 9.75e1
  variant carriers: 5579
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 1140
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 1594
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.25e1
  variant carriers: 847
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 9.25e1
  variant carriers: 1399
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 1450
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 1792
genotype quality: GenotypeQuality
hgvs: p.Pro1078Arg
num of homozygotes: 2298
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

11-116728630-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728630
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728630
    reference: chr 11
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2751C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3531C>A
  hgvsp: ENSP00000391295.1:p.Pro1178His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3053C>A
  hgvsp: ENSP00000438108.1:p.Pro1018His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3407C>A
  hgvsp: ENSP00000364449.1:p.Pro1136His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1237C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2669C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1238C>A
  hgvsp: ENSP00000364437.1:p.Pro413His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2750C>A
  hgvsp: ENSP00000415873.2:p.Pro917His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3227C>A
  hgvsp: ENSP00000390442.2:p.Pro1076His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3233C>A
  hgvsp: ENSP00000292055.3:p.Pro1078His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1420C>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1078His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

11-116728631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728631
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728631
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3530C>T
  hgvsp: ENSP00000391295.1:p.Pro1178Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1419C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3052C>T
  hgvsp: ENSP00000438108.1:p.Pro1018Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2749C>T
  hgvsp: ENSP00000415873.2:p.Pro917Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3226C>T
  hgvsp: ENSP00000390442.2:p.Pro1076Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1237C>T
  hgvsp: ENSP00000364437.1:p.Pro413Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3406C>T
  hgvsp: ENSP00000364449.1:p.Pro1136Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2750C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2668C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1236C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3232C>T
  hgvsp: ENSP00000292055.3:p.Pro1078Ser
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1078Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-116728632-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728632
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728632
    reference: chr 11
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3051C>T
  hgvsp: ENST00000542607.1:c.3051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2749C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2748C>T
  hgvsp: ENST00000434315.2:c.2748C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3225C>T
  hgvsp: ENST00000446921.2:c.3225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3231C>T
  hgvsp: ENST00000292055.4:c.3231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3529C>T
  hgvsp: ENST00000445177.1:c.3529C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1418C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1235C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3405C>T
  hgvsp: ENST00000375300.1:c.3405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2667C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1236C>T
  hgvsp: ENST00000375288.1:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1077Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-116728636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728636
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728636
    reference: chr 11
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1414G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3525G>A
  hgvsp: ENSP00000391295.1:p.Gly1176Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3227G>A
  hgvsp: ENSP00000292055.3:p.Gly1076Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3047G>A
  hgvsp: ENSP00000438108.1:p.Gly1016Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3401G>A
  hgvsp: ENSP00000364449.1:p.Gly1134Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1232G>A
  hgvsp: ENSP00000364437.1:p.Gly411Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2745G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3221G>A
  hgvsp: ENSP00000390442.2:p.Gly1074Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2663G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2744G>A
  hgvsp: ENSP00000415873.2:p.Gly915Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1231G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1076Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

11-116728639-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728639
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728639
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2660C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2741C>A
  hgvsp: ENSP00000415873.2:p.Pro914His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1411C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3522C>A
  hgvsp: ENSP00000391295.1:p.Pro1175His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3398C>A
  hgvsp: ENSP00000364449.1:p.Pro1133His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3218C>A
  hgvsp: ENSP00000390442.2:p.Pro1073His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3224C>A
  hgvsp: ENSP00000292055.3:p.Pro1075His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1228C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2742C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1229C>A
  hgvsp: ENSP00000364437.1:p.Pro410His
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3044C>A
  hgvsp: ENSP00000438108.1:p.Pro1015His
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro1075His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

11-116728646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728646
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728646
    reference: chr 11
allele count: 16
allele frequency: 1.318065738528709e-4
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2735G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3515G>A
  hgvsp: ENSP00000391295.1:p.Gly1173Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3037G>A
  hgvsp: ENSP00000438108.1:p.Gly1013Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1222G>A
  hgvsp: ENSP00000364437.1:p.Gly408Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1404G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3391G>A
  hgvsp: ENSP00000364449.1:p.Gly1131Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2734G>A
  hgvsp: ENSP00000415873.2:p.Gly912Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3211G>A
  hgvsp: ENSP00000390442.2:p.Gly1071Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1221G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2653G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3217G>A
  hgvsp: ENSP00000292055.3:p.Gly1073Ser
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1073Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

11-116728647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728647
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728647
    reference: chr 11
allele count: 3
allele frequency: 2.47137325974133e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1221C>T
  hgvsp: ENST00000375288.1:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1220C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1403C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2652C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3210C>T
  hgvsp: ENST00000446921.2:c.3210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3036C>T
  hgvsp: ENST00000542607.1:c.3036C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3390C>T
  hgvsp: ENST00000375300.1:c.3390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2734C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3514C>T
  hgvsp: ENST00000445177.1:c.3514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3216C>T
  hgvsp: ENST00000292055.4:c.3216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2733C>T
  hgvsp: ENST00000434315.2:c.2733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr1072Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

11-116728650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728650
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728650
    reference: chr 11
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3207T>C
  hgvsp: ENST00000446921.2:c.3207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2731T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1400T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2649T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3511T>C
  hgvsp: ENST00000445177.1:c.3511T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1218T>C
  hgvsp: ENST00000375288.1:c.1218T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3033T>C
  hgvsp: ENST00000542607.1:c.3033T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2730T>C
  hgvsp: ENST00000434315.2:c.2730T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3387T>C
  hgvsp: ENST00000375300.1:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1217T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3213T>C
  hgvsp: ENST00000292055.4:c.3213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1071Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

11-116728666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728666
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728666
    reference: chr 11
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3197G>A
  hgvsp: ENSP00000292055.3:p.Ser1066Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3371G>A
  hgvsp: ENSP00000364449.1:p.Ser1124Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3017G>A
  hgvsp: ENSP00000438108.1:p.Ser1006Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2715G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2714G>A
  hgvsp: ENSP00000415873.2:p.Ser905Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1202G>A
  hgvsp: ENSP00000364437.1:p.Ser401Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3191G>A
  hgvsp: ENSP00000390442.2:p.Ser1064Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2633G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1201G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3495G>A
  hgvsp: ENSP00000391295.1:p.Ser1166Asn
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1384G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1066Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

11-116728668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728668
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728668
    reference: chr 11
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2631C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2713C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3369C>T
  hgvsp: ENST00000375300.1:c.3369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1200C>T
  hgvsp: ENST00000375288.1:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1382C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2712C>T
  hgvsp: ENST00000434315.2:c.2712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3015C>T
  hgvsp: ENST00000542607.1:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3189C>T
  hgvsp: ENST00000446921.2:c.3189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3195C>T
  hgvsp: ENST00000292055.4:c.3195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1199C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3493C>T
  hgvsp: ENST00000445177.1:c.3493C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1065Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-116728669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728669
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728669
    reference: chr 11
allele count: 8
allele frequency: 6.590654451987082e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3368A>G
  hgvsp: ENSP00000364449.1:p.Asp1123Gly
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1198A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2711A>G
  hgvsp: ENSP00000415873.2:p.Asp904Gly
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3188A>G
  hgvsp: ENSP00000390442.2:p.Asp1063Gly
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3194A>G
  hgvsp: ENSP00000292055.3:p.Asp1065Gly
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2712A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2630A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1381A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1199A>G
  hgvsp: ENSP00000364437.1:p.Asp400Gly
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3014A>G
  hgvsp: ENSP00000438108.1:p.Asp1005Gly
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3492A>G
  hgvsp: ENSP00000391295.1:p.Asp1165Gly
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1065Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

11-116728678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728678
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728678
    reference: chr 11
allele count: 5
allele frequency: 4.119769952045878e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3185G>A
  hgvsp: ENSP00000292055.3:p.Gly1062Asp
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2702G>A
  hgvsp: ENSP00000415873.2:p.Gly901Asp
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3483G>A
  hgvsp: ENSP00000391295.1:p.Gly1162Asp
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1372G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1190G>A
  hgvsp: ENSP00000364437.1:p.Gly397Asp
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.3005G>A
  hgvsp: ENSP00000438108.1:p.Gly1002Asp
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3359G>A
  hgvsp: ENSP00000364449.1:p.Gly1120Asp
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2621G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1189G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2703G>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3179G>A
  hgvsp: ENSP00000390442.2:p.Gly1060Asp
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1062Asp
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

11-116728688-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728688
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728688
    reference: chr 11
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1180T>C
  hgvsp: ENST00000375288.1:c.1180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2995T>C
  hgvsp: ENST00000542607.1:c.2995T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3349T>C
  hgvsp: ENST00000375300.1:c.3349T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1362T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1179T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3169T>C
  hgvsp: ENST00000446921.2:c.3169T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2692T>C
  hgvsp: ENST00000434315.2:c.2692T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2611T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2693T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3473T>C
  hgvsp: ENST00000445177.1:c.3473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3175T>C
  hgvsp: ENST00000292055.4:c.3175T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1059Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

11-116728689-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728689
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728689
    reference: chr 11
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3472A>C
  hgvsp: ENST00000445177.1:c.3472A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1179A>C
  hgvsp: ENST00000375288.1:c.1179A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3174A>C
  hgvsp: ENST00000292055.4:c.3174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2610A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3348A>C
  hgvsp: ENST00000375300.1:c.3348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2692A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3168A>C
  hgvsp: ENST00000446921.2:c.3168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2691A>C
  hgvsp: ENST00000434315.2:c.2691A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2994A>C
  hgvsp: ENST00000542607.1:c.2994A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1178A>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1361A>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1058Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-116728690-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728690
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728690
    reference: chr 11
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3173C>G
  hgvsp: ENSP00000292055.3:p.Thr1058Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2993C>G
  hgvsp: ENSP00000438108.1:p.Thr998Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1360C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2609C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2691C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3347C>G
  hgvsp: ENSP00000364449.1:p.Thr1116Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2690C>G
  hgvsp: ENSP00000415873.2:p.Thr897Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3471C>G
  hgvsp: ENSP00000391295.1:p.Thr1158Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1178C>G
  hgvsp: ENSP00000364437.1:p.Thr393Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1177C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3167C>G
  hgvsp: ENSP00000390442.2:p.Thr1056Arg
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1058Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-116728695-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728695
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728695
    reference: chr 11
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2604A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3466A>G
  hgvsp: ENST00000445177.1:c.3466A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1355A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3162A>G
  hgvsp: ENST00000446921.2:c.3162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3168A>G
  hgvsp: ENST00000292055.4:c.3168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3342A>G
  hgvsp: ENST00000375300.1:c.3342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1173A>G
  hgvsp: ENST00000375288.1:c.1173A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2988A>G
  hgvsp: ENST00000542607.1:c.2988A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1172A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2685A>G
  hgvsp: ENST00000434315.2:c.2685A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2686A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1056Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-116728702-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728702
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728702
    reference: chr 11
allele count: 12
allele frequency: 9.891849116328145e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3459A>T
  hgvsp: ENSP00000391295.1:p.Lys1154Met
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1165A>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2597A>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1166A>T
  hgvsp: ENSP00000364437.1:p.Lys389Met
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3335A>T
  hgvsp: ENSP00000364449.1:p.Lys1112Met
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3155A>T
  hgvsp: ENSP00000390442.2:p.Lys1052Met
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2981A>T
  hgvsp: ENSP00000438108.1:p.Lys994Met
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2678A>T
  hgvsp: ENSP00000415873.2:p.Lys893Met
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1348A>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2679A>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3161A>T
  hgvsp: ENSP00000292055.3:p.Lys1054Met
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys1054Met
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-116728702-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728702
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728702
    reference: chr 11
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1165A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2678A>G
  hgvsp: ENSP00000415873.2:p.Lys893Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1348A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2597A>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2981A>G
  hgvsp: ENSP00000438108.1:p.Lys994Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3161A>G
  hgvsp: ENSP00000292055.3:p.Lys1054Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3335A>G
  hgvsp: ENSP00000364449.1:p.Lys1112Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1166A>G
  hgvsp: ENSP00000364437.1:p.Lys389Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3155A>G
  hgvsp: ENSP00000390442.2:p.Lys1052Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3459A>G
  hgvsp: ENSP00000391295.1:p.Lys1154Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2679A>G
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1054Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-116728712-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728712
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728712
    reference: chr 11
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1155C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2668C>A
  hgvsp: ENSP00000415873.2:p.Gln890Lys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3449C>A
  hgvsp: ENSP00000391295.1:p.Gln1151Lys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1338C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2971C>A
  hgvsp: ENSP00000438108.1:p.Gln991Lys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3325C>A
  hgvsp: ENSP00000364449.1:p.Gln1109Lys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3145C>A
  hgvsp: ENSP00000390442.2:p.Gln1049Lys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1156C>A
  hgvsp: ENSP00000364437.1:p.Gln386Lys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2587C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2669C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3151C>A
  hgvsp: ENSP00000292055.3:p.Gln1051Lys
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln1051Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-116728719-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728719
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728719
    reference: chr 11
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3442T>C
  hgvsp: ENST00000445177.1:c.3442T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3138T>C
  hgvsp: ENST00000446921.2:c.3138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2662T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2964T>C
  hgvsp: ENST00000542607.1:c.2964T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3318T>C
  hgvsp: ENST00000375300.1:c.3318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2580T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2661T>C
  hgvsp: ENST00000434315.2:c.2661T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1149T>C
  hgvsp: ENST00000375288.1:c.1149T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1331T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3144T>C
  hgvsp: ENST00000292055.4:c.3144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1148T>C
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1048Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

11-116728726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728726
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728726
    reference: chr 11
allele count: 6
allele frequency: 4.950168305722395e-5
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2655C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3435C>T
  hgvsp: ENSP00000391295.1:p.Ala1146Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2957C>T
  hgvsp: ENSP00000438108.1:p.Ala986Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3131C>T
  hgvsp: ENSP00000390442.2:p.Ala1044Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1142C>T
  hgvsp: ENSP00000364437.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1141C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2573C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3137C>T
  hgvsp: ENSP00000292055.3:p.Ala1046Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3311C>T
  hgvsp: ENSP00000364449.1:p.Ala1104Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1324C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2654C>T
  hgvsp: ENSP00000415873.2:p.Ala885Val
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala1046Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/11-116728727-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728727
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728727
    reference: chr 11
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2653G>T
  hgvsp: ENSP00000415873.2:p.Ala885Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2956G>T
  hgvsp: ENSP00000438108.1:p.Ala986Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1323G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3434G>T
  hgvsp: ENSP00000391295.1:p.Ala1146Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2572G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1141G>T
  hgvsp: ENSP00000364437.1:p.Ala381Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3310G>T
  hgvsp: ENSP00000364449.1:p.Ala1104Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3130G>T
  hgvsp: ENSP00000390442.2:p.Ala1044Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1140G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3136G>T
  hgvsp: ENSP00000292055.3:p.Ala1046Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2654G>T
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1046Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-116728736-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728736
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728736
    reference: chr 11
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2947T>C
  hgvsp: ENSP00000438108.1:p.Cys983Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3301T>C
  hgvsp: ENSP00000364449.1:p.Cys1101Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3425T>C
  hgvsp: ENSP00000391295.1:p.Cys1143Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2563T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1132T>C
  hgvsp: ENSP00000364437.1:p.Cys378Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2645T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1131T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3127T>C
  hgvsp: ENSP00000292055.3:p.Cys1043Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1314T>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3121T>C
  hgvsp: ENSP00000390442.2:p.Cys1041Arg
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2644T>C
  hgvsp: ENSP00000415873.2:p.Cys882Arg
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys1043Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/11-116728737-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728737
    reference: chr 11
allele count: 2
allele frequency: 1.651336757104876e-5
allele num: 121114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2946G>T
  hgvsp: ENST00000542607.1:c.2946G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2643G>T
  hgvsp: ENST00000434315.2:c.2643G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1130G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3424G>T
  hgvsp: ENST00000445177.1:c.3424G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2644G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3300G>T
  hgvsp: ENST00000375300.1:c.3300G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3120G>T
  hgvsp: ENST00000446921.2:c.3120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2562G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1131G>T
  hgvsp: ENST00000375288.1:c.1131G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1313G>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3126G>T
  hgvsp: ENST00000292055.4:c.3126G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1042Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

11-116728737-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116728737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116728737
    reference: chr 11
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000488337
  gene symbol: SIK3
  hgvsc: ENST00000488337.1:n.1313G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000465421
  gene symbol: SIK3
  hgvsc: ENST00000465421.1:n.2562G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.3300G>C
  hgvsp: ENST00000375300.1:c.3300G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.3120G>C
  hgvsp: ENST00000446921.2:c.3120G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000480468
  gene symbol: SIK3
  hgvsc: ENST00000480468.1:n.1130G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.3126G>C
  hgvsp: ENST00000292055.4:c.3126G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.*2644G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.2946G>C
  hgvsp: ENST00000542607.1:c.2946G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.1131G>C
  hgvsp: ENST00000375288.1:c.1131G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.2643G>C
  hgvsp: ENST00000434315.2:c.2643G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.3424G>C
  hgvsp: ENST00000445177.1:c.3424G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1042Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.781706e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.07e-1

FS
type: SiteQuality
SIO_000300: 4.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

QD
type: SiteQuality
SIO_000300: 8.51e0

GenotypeQuality
all individuals: 3625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5122
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.85e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

FS
type: SiteQuality
SIO_000300: 1.812e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.05e-1

DP
type: SiteQuality
SIO_000300: 1.77772e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50407604608489e-5
allele num: 66486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.521e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.1073e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

DP
type: SiteQuality
SIO_000300: 1.77542e6

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

FS
type: SiteQuality
SIO_000300: 4.721e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.464e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.770981e6

GenotypeQuality
all individuals: 31412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5545
bin: 9.75e1
variant carriers: 740

GenotypeQuality
all individuals: 649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3527
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2916
bin: 7.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.560163850486431e-4
allele num: 66402
num of homozygotes: 0

African
type: Population
allele count: 695
allele frequency: 6.733191242007362e-2
allele num: 10322
num of homozygotes: 20

Latino
type: Population
allele count: 51
allele frequency: 4.432470015644012e-3
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 1.760559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.36e-2

QD
type: SiteQuality
SIO_000300: 1.551e1

FS
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.75e1
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GenotypeQuality
all individuals: 2940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 757
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variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012411133871551e-5
allele num: 66392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 1.3068e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.592e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 1.744233e6

GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 711
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.737658e6

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: -5.2e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

FS
type: SiteQuality
SIO_000300: 7.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

GenotypeQuality
all individuals: 1018
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 2359
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4932
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GenotypeQuality
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GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 587
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1020
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GenotypeQuality
all individuals: 344
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GenotypeQuality
all individuals: 7939
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.366e0

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.178e0

QD
type: SiteQuality
SIO_000300: 1.354e1

DP
type: SiteQuality
SIO_000300: 1.710126e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.096e0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3463
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variant carriers: 0

GenotypeQuality
all individuals: 1735
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variant carriers: 0

GenotypeQuality
all individuals: 1387
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 7899
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variant carriers: 0

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 1084
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variant carriers: 0

GenotypeQuality
all individuals: 2016
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variant carriers: 0

GenotypeQuality
all individuals: 655
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1016
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
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variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28095
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variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

DP
type: SiteQuality
SIO_000300: 1.7038e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

QD
type: SiteQuality
SIO_000300: 1.342e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2330
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variant carriers: 0

GenotypeQuality
all individuals: 521
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GenotypeQuality
all individuals: 7609
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 1385
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GenotypeQuality
all individuals: 1916
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 1013
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GenotypeQuality
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GenotypeQuality
all individuals: 2294
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 4927
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variant carriers: 2

GenotypeQuality
all individuals: 2381
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GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50879628232596e-5
allele num: 66278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.688172e6

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: -4.107e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 2.648e1

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 1240
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variant carriers: 0

GenotypeQuality
all individuals: 980
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variant carriers: 0

GenotypeQuality
all individuals: 974
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
all individuals: 2274
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GenotypeQuality
all individuals: 2729
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5523
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variant carriers: 741

GenotypeQuality
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GenotypeQuality
all individuals: 988
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variant carriers: 0

GenotypeQuality
all individuals: 26343
bin: 6.25e1
variant carriers: 4

Latino
type: Population
allele count: 32
allele frequency: 2.789886660854403e-3
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 45
allele frequency: 2.755664421310471e-3
allele num: 16330
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.52476208972616e-3
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.28310502283105e-3
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 631
allele frequency: 9.522228593849033e-3
allele num: 66266
num of homozygotes: 3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.688954e6

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

FS
type: SiteQuality
SIO_000300: 1.644e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.377e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6894
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GenotypeQuality
all individuals: 1358
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 1.645923e6

QD
type: SiteQuality
SIO_000300: 1.611e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.104e0

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5678
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4851
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 8.796622097114708e-5
allele num: 11368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.560518074853303e-5
allele num: 65782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 4.406e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.645e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

DP
type: SiteQuality
SIO_000300: 1.600762e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeQuality
all individuals: 741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9433
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3686
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4039
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.365958360163125e-5
allele num: 18636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.848e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

DP
type: SiteQuality
SIO_000300: 5.55423e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

GenotypeQuality
all individuals: 437
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.001920922042581e-5
allele num: 24988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.02723e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.1e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.001920922042581e-5
allele num: 24988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 7.02723e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

QD
type: SiteQuality
SIO_000300: 9.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 3184
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variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
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variant carriers: 2

GenotypeQuality
all individuals: 3253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 0

GenotypeQuality
all individuals: 11622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.795642602292568e-5
allele num: 26346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.48015873015873e-4
allele num: 4032
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.27e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.816e0

DP
type: SiteQuality
SIO_000300: 7.23345e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
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variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2968
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
all individuals: 474
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variant carriers: 0

GenotypeQuality
all individuals: 12080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26850
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.380952380952381e-3
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.654835847382431e-4
allele num: 4508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.343e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

FS
type: SiteQuality
SIO_000300: 6.126e0

DP
type: SiteQuality
SIO_000300: 7.32447e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

GenotypeQuality
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
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GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1702
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2518
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.87012987012987e-4
allele num: 6160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.395e1

FS
type: SiteQuality
SIO_000300: 3.833e0

DP
type: SiteQuality
SIO_000300: 8.21152e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.25e1
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GenotypeQuality
all individuals: 537
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 238
bin: 1.25e1
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GenotypeQuality
all individuals: 2174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
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GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20746
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.990445859872612e-4
allele num: 5024
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -2.01e0

ClippingRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: -4.4e-3

MQRankSum
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SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.482e1

DP
type: SiteQuality
SIO_000300: 8.89022e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.105e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.582994120307553e-4
allele num: 44220
num of homozygotes: 0

DP
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SIO_000300: 1.006727e6

InbreedingCoeff
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SIO_000300: -1.6e-3

MQ
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SIO_000300: 6.0e1

FS
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ReadPosRankSum
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 2.45e-1

ClippingRankSum
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SIO_000300: -5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
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SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.562e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 4.093327875562833e-4
allele num: 9772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 1.324e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.124309e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.641497045305318e-4
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.16875e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
SIO_000300: 1.147e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 5.763e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.663e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.48638566398215e-4
allele num: 57366
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

BaseQRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.215711e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 820
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.591849729385546e-5
allele num: 62820
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
type: Population
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.550099206349206e-5
allele num: 64512
num of homozygotes: 0

East Asian
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South Asian
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
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South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.606596646397641e-5
allele num: 65124
num of homozygotes: 0

Latino
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Other
type: Population
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VQSLOD
type: SiteQuality
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MQ
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.779042874933286e-4
allele num: 11242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.063e0

QD
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DP
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VQSLOD
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MQRankSum
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SIO_000300: 7.16e-1

InbreedingCoeff
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SIO_000300: 3.3e-3

ClippingRankSum
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SIO_000300: -4.46e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.806e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.421648390519986e-4
allele num: 11308
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

South Asian
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allele count: 22
allele frequency: 1.477700161203654e-3
allele num: 14888
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 36
allele frequency: 5.508630187293427e-4
allele num: 65352
num of homozygotes: 0

MQRankSum
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SIO_000300: 2.14e-1

VQSLOD
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MQ
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DP
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QD
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BaseQRankSum
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SIO_000300: -2.445e0

FS
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SIO_000300: 1.799e0

ClippingRankSum
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SIO_000300: 1.27e-1

ReadPosRankSum
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SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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QD
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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FS
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SIO_000300: 9.523e0

InbreedingCoeff
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SIO_000300: -3.0e-4

DP
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SIO_000300: 1.402473e6

ReadPosRankSum
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SIO_000300: 1.18e-1

ClippingRankSum
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SIO_000300: -3.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 31
allele frequency: 4.676280697520063e-4
allele num: 66292
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.3e-3

BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 6.6e-1

DP
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SIO_000300: 1.419995e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1532
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

VQSLOD
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SIO_000300: 3.22e-1

InbreedingCoeff
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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SIO_000300: 1.98e-1

QD
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SIO_000300: 1.153e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele num: 16292
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Other
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East Asian
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MQ
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FS
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 1.212268153715602e-4
allele num: 16498
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.801e1

DP
type: SiteQuality
SIO_000300: 1.437671e6

InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.638e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.271e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 611
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.717e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 1.589e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 4.13e0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -3.957e0

ReadPosRankSum
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SIO_000300: 2.4e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

DP
type: SiteQuality
SIO_000300: 1.437814e6

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 808
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995563283170454e-5
allele num: 66716
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.175e0

FS
type: SiteQuality
SIO_000300: 2.658e0

ReadPosRankSum
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SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.438555e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.387e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeDepth
all individuals: 16
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995563283170454e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.079e0

DP
type: SiteQuality
SIO_000300: 1.438772e6

MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.372e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 612
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: -8.61e-1

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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FS
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QD
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.439876e6

MQRankSum
type: SiteQuality
SIO_000300: -3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

GenotypeDepth
all individuals: 632
bin: 3.75e1
variant carriers: 204

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31251
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4455
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1392
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20757
bin: 9.75e1
variant carriers: 20355

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1429
bin: 7.75e1
variant carriers: 4

African
type: Population
allele count: 1536
allele frequency: 1.476071497213146e-1
allele num: 10406
num of homozygotes: 107

European (Non-Finnish)
type: Population
allele count: 11886
allele frequency: 1.781421420221216e-1
allele num: 66722
num of homozygotes: 1064

Latino
type: Population
allele count: 2746
allele frequency: 2.372149274360746e-1
allele num: 11576
num of homozygotes: 350

European (Finnish)
type: Population
allele count: 1231
allele frequency: 1.861766485178463e-1
allele num: 6612
num of homozygotes: 116

Other
type: Population
allele count: 189
allele frequency: 2.081497797356828e-1
allele num: 908
num of homozygotes: 23

East Asian
type: Population
allele count: 844
allele frequency: 9.770780273211392e-2
allele num: 8638
num of homozygotes: 46

South Asian
type: Population
allele count: 4265
allele frequency: 2.58296996124031e-1
allele num: 16512
num of homozygotes: 592

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

QD
type: SiteQuality
SIO_000300: 1.577e1

DP
type: SiteQuality
SIO_000300: 2.692815e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1392
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 20757
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 2.692815e6

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

QD
type: SiteQuality
SIO_000300: 1.577e1

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 3626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1305
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2284
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variant carriers: 0

GenotypeQuality
all individuals: 3332
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 37271
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1022
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 2964
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4804
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.753586e6

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.446e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

GenotypeDepth
all individuals: 170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2955
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7642
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37228
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variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.595e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

DP
type: SiteQuality
SIO_000300: 1.76082e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e0

MQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeDepth
all individuals: 7493
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1019
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 3327
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 0
bin: 1.25e1
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GenotypeQuality
all individuals: 2961
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GenotypeQuality
all individuals: 2278
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GenotypeQuality
all individuals: 4841
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1300
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variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37253
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.756666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.334e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeDepth
all individuals: 162
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variant carriers: 0

GenotypeQuality
all individuals: 37279
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 3325
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1023
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variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

DP
type: SiteQuality
SIO_000300: 1.753499e6

QD
type: SiteQuality
SIO_000300: 1.696e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
SIO_000300: 1.736e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeDepth
all individuals: 165
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1022
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GenotypeQuality
all individuals: 2967
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GenotypeQuality
all individuals: 7656
bin: 6.75e1
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GenotypeQuality
all individuals: 37268
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GenotypeQuality
all individuals: 2283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4805
bin: 9.75e1
variant carriers: 16

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.664243305464679e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

DP
type: SiteQuality
SIO_000300: 1.753953e6

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

FS
type: SiteQuality
SIO_000300: 3.222e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.753308e6

ClippingRankSum
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SIO_000300: 1.35e-1

MQRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.962e1

ReadPosRankSum
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SIO_000300: 1.04e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

QD
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SIO_000300: 2.632e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.421e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 5.77e0

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ClippingRankSum
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SIO_000300: -1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

QD
type: SiteQuality
SIO_000300: 1.217e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.059871530723549e-5
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.247e0

VQSLOD
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MQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

DP
type: SiteQuality
SIO_000300: 1.752995e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 1.03e0

InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66720
num of homozygotes: 0

East Asian
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QD
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MQ
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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DP
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.067961165048543e-5
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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European (Finnish)
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African
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FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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num of homozygotes: 0

African
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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African
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DP
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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FS
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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MQRankSum
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QD
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InbreedingCoeff
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FS
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Other
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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FS
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.183137525915688e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.741788e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.763e0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.368e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 5.19e-1

GenotypeDepth
all individuals: 162
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.740826e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.338e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 3.491e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.839e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeDepth
all individuals: 3597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.004e0

FS
type: SiteQuality
SIO_000300: 7.008e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.736626e6

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002191599867904e-5
allele num: 66618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.359e1

DP
type: SiteQuality
SIO_000300: 1.736732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeDepth
all individuals: 1644
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0