15-75093103-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093103
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093103
    reference: chr 15
allele count: 24
allele frequency: 7.663324605658088e-4
allele num: 31318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.622+16C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.97+16C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.745+16C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.622+16C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.474+16C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.622+16C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.99C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.622+16C>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33453
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29837
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-75093106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093106
    reference: chr 15
allele count: 1
allele frequency: 3.081664098613251e-5
allele num: 32450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.745+19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.622+19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.622+19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.622+19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.622+19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.102C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.97+19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.474+19C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33739
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-75093108-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093108
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093108
    reference: chr 15
allele count: 1
allele frequency: 3.086991418163858e-5
allele num: 32394
alternate allele: G
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 5.561735261401557e-4
  allele num: 1798
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16002
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1368
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 766
  num of homozygotes: 0
population: South Asian
population: Other
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-75093108-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093108
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093109
    reference: chr 15
allele count: 4
allele frequency: 1.234796567265543e-4
allele num: 32394
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.111dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.622+28dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.622+28dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.474+28dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.97+28dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.622+28dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.622+28dupG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.745+28dupG
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

15-75093108-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093108
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093107
    reference: chr 15
allele count: 6
allele frequency: 1.852194850898315e-4
allele num: 32394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.745+28delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.474+28delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.111delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.622+28delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.622+28delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.97+28delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.622+28delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.622+28delG
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33551
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: TG
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

15-75093115-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093115
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093115
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 35978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.622+28G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.622+28G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.622+28G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.97+28G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.474+28G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.111G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.745+28G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.622+28G>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34057
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6217
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

15-75093129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093129
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093129
    reference: chr 15
allele count: 4
allele frequency: 9.46880030300161e-5
allele num: 42244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.125C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.623-35C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.98-35C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.623-35C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.475-35C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.623-35C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.623-35C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.746-35C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32916
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

15-75093130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093130
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093130
    reference: chr 15
allele count: 74
allele frequency: 1.703969789076172e-3
allele num: 43428
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.623-34G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.126G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.746-34G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.623-34G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.475-34G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.623-34G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.98-34G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.623-34G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33648
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum

15-75093133-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093133
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093133
    reference: chr 15
allele count: 1
allele frequency: 2.171929976977542e-5
allele num: 46042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.129C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.623-31C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.98-31C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.623-31C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.746-31C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.475-31C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.623-31C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.623-31C>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-75093138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093138
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093138
    reference: chr 15
allele count: 1
allele frequency: 2.027081813021974e-5
allele num: 49332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.623-26G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.746-26G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.98-26G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.623-26G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.134G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.623-26G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.623-26G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.475-26G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-75093151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093151
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093151
    reference: chr 15
allele count: 1
allele frequency: 1.592458118351487e-5
allele num: 62796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.98-13T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.746-13T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.147T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.623-13T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.475-13T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.623-13T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.623-13T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.623-13T>C
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-75093154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093154
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093154
    reference: chr 15
allele count: 2
allele frequency: 3.024071610015725e-5
allele num: 66136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.623-10C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.475-10C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.623-10C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.98-10C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.623-10C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.150C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.623-10C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.746-10C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

15-75093165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093165
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093165
    reference: chr 15
allele count: 1
allele frequency: 1.22040517451794e-5
allele num: 81940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.624C>T
  hgvsp: ENST00000567571.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.624C>T
  hgvsp: ENST00000439220.2:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.476C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.747C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.624C>T
  hgvsp: ENST00000309470.9:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.624C>T
  hgvsp: ENST00000220003.9:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.161C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.99C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
hgvs: c.624C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

15-75093166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093166
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093166
    reference: chr 15
allele count: 1
allele frequency: 1.193659281894576e-5
allele num: 83776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.100G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.625G>A
  hgvsp: ENSP00000438808.1:p.Val209Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.162G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.625G>A
  hgvsp: ENSP00000414764.2:p.Val209Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.748G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.477G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.625G>A
  hgvsp: ENSP00000454906.1:p.Val209Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.625G>A
  hgvsp: ENSP00000220003.9:p.Val209Met
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val209Met
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-75093169-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093169
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093169
    reference: chr 15
allele count: 2
allele frequency: 2.282115064241539e-5
allele num: 87638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.751A>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.628A>T
  hgvsp: ENSP00000414764.2:p.Met210Leu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.628A>T
  hgvsp: ENSP00000220003.9:p.Met210Leu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.165A>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.480A>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.103A>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.628A>T
  hgvsp: ENSP00000438808.1:p.Met210Leu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.628A>T
  hgvsp: ENSP00000454906.1:p.Met210Leu
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16320
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17427
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met210Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

15-75093177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093177
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093177
    reference: chr 15
allele count: 1
allele frequency: 1.044168319933173e-5
allele num: 95770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.636C>T
  hgvsp: ENST00000309470.9:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.173C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.636C>T
  hgvsp: ENST00000220003.9:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.636C>T
  hgvsp: ENST00000567571.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.111C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.636C>T
  hgvsp: ENST00000439220.2:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.759C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.488C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly212Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

15-75093180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093180
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093180
    reference: chr 15
allele count: 1
allele frequency: 9.937986961361106e-6
allele num: 100624
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.639T>A
  hgvsp: ENSP00000220003.9:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.176T>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.491T>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.639T>A
  hgvsp: ENSP00000454906.1:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.639T>A
  hgvsp: ENSP00000438808.1:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.114T>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.762T>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.639T>A
  hgvsp: ENSP00000414764.2:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp213Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

15-75093189-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093189
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093189
    reference: chr 15
allele count: 1
allele frequency: 9.197432076964111e-6
allele num: 108726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.771G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.648G>T
  hgvsp: ENST00000567571.1:c.648G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.648G>T
  hgvsp: ENST00000220003.9:c.648G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.123G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.500G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.648G>T
  hgvsp: ENST00000309470.9:c.648G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.648G>T
  hgvsp: ENST00000439220.2:c.648G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.185G>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38553
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly216Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

15-75093193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093193
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093193
    reference: chr 15
allele count: 1
allele frequency: 9.010632546404758e-6
allele num: 110980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.652A>G
  hgvsp: ENSP00000454906.1:p.Lys218Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.504A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.652A>G
  hgvsp: ENSP00000438808.1:p.Lys218Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.652A>G
  hgvsp: ENSP00000220003.9:p.Lys218Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.775A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.189A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.652A>G
  hgvsp: ENSP00000414764.2:p.Lys218Glu
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.127A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.1A>G
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys218Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-75093194-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093194
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093194
    reference: chr 15
allele count: 1
allele frequency: 8.974243919949743e-6
allele num: 111430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.653A>G
  hgvsp: ENSP00000438808.1:p.Lys218Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.2A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.128A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.505A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.653A>G
  hgvsp: ENSP00000220003.9:p.Lys218Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.653A>G
  hgvsp: ENSP00000454906.1:p.Lys218Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.653A>G
  hgvsp: ENSP00000414764.2:p.Lys218Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.776A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.190A>G
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys218Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-75093198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093198
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093198
    reference: chr 15
allele count: 2
allele frequency: 1.777303830089754e-5
allele num: 112530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.6C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.657C>T
  hgvsp: ENST00000567571.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.780C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.132C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.194C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.509C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.657C>T
  hgvsp: ENST00000309470.9:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.657C>T
  hgvsp: ENST00000439220.2:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.657C>T
  hgvsp: ENST00000220003.9:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val219Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-75093199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093199
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093199
    reference: chr 15
allele count: 1
allele frequency: 8.848774444739404e-6
allele num: 113010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.658G>A
  hgvsp: ENSP00000438808.1:p.Ala220Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.7G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.658G>A
  hgvsp: ENSP00000454906.1:p.Ala220Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.195G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.510G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.133G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.658G>A
  hgvsp: ENSP00000220003.9:p.Ala220Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.658G>A
  hgvsp: ENSP00000414764.2:p.Ala220Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.781G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39727
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala220Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

15-75093201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093201
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093201
    reference: chr 15
allele count: 4
allele frequency: 3.500420050406049e-5
allele num: 114272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.660C>T
  hgvsp: ENST00000439220.2:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.660C>T
  hgvsp: ENST00000220003.9:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.197C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.135C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.660C>T
  hgvsp: ENST00000567571.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.660C>T
  hgvsp: ENST00000309470.9:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.512C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.9C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.783C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala220Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-75093219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093219
    reference: chr 15
allele count: 3
allele frequency: 2.548333389962964e-5
allele num: 117724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.801C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.678C>T
  hgvsp: ENST00000439220.2:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.27C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.530C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.678C>T
  hgvsp: ENST00000309470.9:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.678C>T
  hgvsp: ENST00000220003.9:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.678C>T
  hgvsp: ENST00000567571.1:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.215C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.153C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11326
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn226Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-75093222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093222
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093222
    reference: chr 15
allele count: 1
allele frequency: 8.477737461426295e-6
allele num: 117956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.681C>T
  hgvsp: ENST00000439220.2:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.156C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.30C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.681C>T
  hgvsp: ENST00000567571.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.804C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.681C>T
  hgvsp: ENST00000309470.9:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.681C>T
  hgvsp: ENST00000220003.9:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.533C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.218C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp227Asp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-75093223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093223
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093223
    reference: chr 15
allele count: 1
allele frequency: 8.466683600033867e-6
allele num: 118110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.534G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.31G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.157G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.682G>A
  hgvsp: ENSP00000220003.9:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.682G>A
  hgvsp: ENSP00000414764.2:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.682G>A
  hgvsp: ENSP00000438808.1:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.805G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.219G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.682G>A
  hgvsp: ENSP00000454906.1:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala228Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

15-75093270-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093270
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093270
    reference: chr 15
allele count: 3
allele frequency: 2.547727427134996e-5
allele num: 117752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.78G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+7G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+7G>C
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6627
  bin: 6.75e1
  variant carriers: 0
hgvs: c.722+7G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-75093275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093275
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093275
    reference: chr 15
allele count: 1
allele frequency: 8.503690601721147e-6
allele num: 117596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+12C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.83C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

15-75093276-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093276
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093276
    reference: chr 15
allele count: 3
allele frequency: 2.546343450804645e-5
allele num: 117816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.84G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+13G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+13G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-75093280-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093280
    reference: chr 15
allele count: 1
allele frequency: 8.489973341483707e-6
allele num: 117786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.88T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+17T>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+17T>C
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-75093281-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093280
    reference: chr 15
allele count: 19
allele frequency: 1.611152567668408e-4
allele num: 117928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+24delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.95delG
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+24delG
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: AG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-75093283-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093283
    reference: chr 15
allele count: 20
allele frequency: 1.69485780143046e-4
allele num: 118004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.91G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+20G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+20G>C
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

15-75093285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093285
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093285
    reference: chr 15
allele count: 2
allele frequency: 1.692763436309776e-5
allele num: 118150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.93G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+22G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+22G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-75093287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093287
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093287
    reference: chr 15
allele count: 1
allele frequency: 8.459234946791412e-6
allele num: 118214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.95G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+24G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+24G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42095
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

15-75093287-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093287
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093287
    reference: chr 15
allele count: 2
allele frequency: 1.691846989358282e-5
allele num: 118214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.95G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+24G>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+24G>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

15-75093299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093299
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093299
    reference: chr 15
allele count: 1
allele frequency: 8.426729586247577e-6
allele num: 118670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+36G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.107G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

15-75093300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093300
    reference: chr 15
allele count: 7
allele frequency: 5.896822455099909e-5
allele num: 118708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.108G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+37G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+37G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6741
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-75093303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093303
    reference: chr 15
allele count: 1
allele frequency: 8.415949908266146e-6
allele num: 118822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.111A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+40A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+40A>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-75093306-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093306
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093306
    reference: chr 15
allele count: 1
allele frequency: 8.402655239055541e-6
allele num: 119010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.114A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.722+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.722+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.259+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.722+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.574+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.845+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.722+43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.197+43A>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

15-75093310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093310
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093310
    reference: chr 15
allele count: 1
allele frequency: 8.390247176681825e-6
allele num: 119186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.723-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.575-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.118A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.723-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.723-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.846-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.723-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.260-43A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.198-43A>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

15-75093323-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093323
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093323
    reference: chr 15
allele count: 1
allele frequency: 8.369601606963508e-6
allele num: 119480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.723-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.846-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.260-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.723-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.723-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.131C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.723-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.575-30C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.198-30C>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-75093334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093334
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093334
    reference: chr 15
allele count: 2
allele frequency: 1.672520488375983e-5
allele num: 119580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.260-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.846-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.575-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.198-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.723-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.723-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.142C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.723-19C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.723-19C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

15-75093340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093340
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093340
    reference: chr 15
allele count: 3
allele frequency: 2.507690250100308e-5
allele num: 119632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.846-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.723-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.148C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.260-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.575-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.723-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.723-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.723-13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.198-13C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6812
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

15-75093342-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093342
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093342
    reference: chr 15
allele count: 1
allele frequency: 8.353800143685363e-6
allele num: 119706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.260-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.150T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.198-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.723-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.723-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.723-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.846-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.723-11T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.575-11T>G
  variant of: http://identifiers.org/hgnc/2444
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42958
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-75093348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093348
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093348
    reference: chr 15
allele count: 1869
allele frequency: 1.559579439252336e-2
allele num: 119840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.198-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.575-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.846-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.156C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.723-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.723-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.723-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.260-5C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.723-5C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 11862
  bin: 2.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 9.75e1
  variant carriers: 1212
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 39746
  bin: 2.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
hgvs: c.723-5C>T
num of homozygotes: 166
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-75093361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093361
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093361
    reference: chr 15
allele count: 5
allele frequency: 4.167500166700006e-5
allele num: 119976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.731G>A
  hgvsp: ENSP00000454906.1:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.731G>A
  hgvsp: ENSP00000220003.9:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.731G>A
  hgvsp: ENSP00000438808.1:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.583G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.206G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.268G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.731G>A
  hgvsp: ENSP00000414764.2:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.854G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.169G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg244Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

15-75093362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093362
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093362
    reference: chr 15
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.584G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.732G>A
  hgvsp: ENST00000567571.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.732G>A
  hgvsp: ENST00000439220.2:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.732G>A
  hgvsp: ENST00000309470.9:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.170G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.732G>A
  hgvsp: ENST00000220003.9:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.207G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.269G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.855G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg244Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

15-75093384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093384
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093384
    reference: chr 15
allele count: 1
allele frequency: 8.320436656515735e-6
allele num: 120186
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.754C>T
  hgvsp: ENST00000220003.9:c.754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.192C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.877C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.754C>T
  hgvsp: ENST00000439220.2:c.754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.754C>T
  hgvsp: ENST00000309470.9:c.754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.229C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.606C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.291C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.754C>T
  hgvsp: ENST00000567571.1:c.754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu252Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

15-75093389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093389
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093389
    reference: chr 15
allele count: 12620
allele frequency: 1.049340628273993e-1
allele num: 120266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.882C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.296C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.759C>T
  hgvsp: ENST00000439220.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.759C>T
  hgvsp: ENST00000567571.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.759C>T
  hgvsp: ENST00000309470.9:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.759C>T
  hgvsp: ENST00000220003.9:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.234C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.611C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.197C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 32800
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 9.75e1
  variant carriers: 8917
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35231
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5492
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly253Gly
num of homozygotes: 1519
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-75093390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093390
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093390
    reference: chr 15
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.883G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.760G>A
  hgvsp: ENSP00000454906.1:p.Val254Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.235G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.760G>A
  hgvsp: ENSP00000414764.2:p.Val254Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.760G>A
  hgvsp: ENSP00000220003.9:p.Val254Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.198G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.760G>A
  hgvsp: ENSP00000438808.1:p.Val254Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.612G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.297G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val254Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-75093395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093395
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093395
    reference: chr 15
allele count: 218
allele frequency: 1.812286973148225e-3
allele num: 120290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.203C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.765C>T
  hgvsp: ENST00000439220.2:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.765C>T
  hgvsp: ENST00000220003.9:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.240C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.617C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.765C>T
  hgvsp: ENST00000567571.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.888C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.765C>T
  hgvsp: ENST00000309470.9:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.302C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Ile255Ile
num of homozygotes: 2
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

15-75093396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093396
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093396
    reference: chr 15
allele count: 1
allele frequency: 8.311032063961702e-6
allele num: 120322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.303G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.889G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.766G>A
  hgvsp: ENSP00000414764.2:p.Val256Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.618G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.766G>A
  hgvsp: ENSP00000454906.1:p.Val256Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.766G>A
  hgvsp: ENSP00000438808.1:p.Val256Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.766G>A
  hgvsp: ENSP00000220003.9:p.Val256Met
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.204G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.241G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val256Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

15-75093398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093398
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093398
    reference: chr 15
allele count: 2
allele frequency: 1.662068277764851e-5
allele num: 120332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.243G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.768G>A
  hgvsp: ENST00000220003.9:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.620G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.305G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.768G>A
  hgvsp: ENST00000439220.2:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.768G>A
  hgvsp: ENST00000309470.9:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.768G>A
  hgvsp: ENST00000567571.1:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.206G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.891G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val256Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

15-75093411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093411
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093411
    reference: chr 15
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.633G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.318G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.781G>A
  hgvsp: ENSP00000414764.2:p.Gly261Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.904G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.781G>A
  hgvsp: ENSP00000438808.1:p.Gly261Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.781G>A
  hgvsp: ENSP00000220003.9:p.Gly261Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.256G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.219G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.781G>A
  hgvsp: ENSP00000454906.1:p.Gly261Arg
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly261Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

15-75093416-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093416
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093416
    reference: chr 15
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.786C>G
  hgvsp: ENST00000309470.9:c.786C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.261C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.786C>G
  hgvsp: ENST00000567571.1:c.786C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.786C>G
  hgvsp: ENST00000220003.9:c.786C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.224C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.786C>G
  hgvsp: ENST00000439220.2:c.786C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.909C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.638C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.323C>G
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38117
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu262Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-75093422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093422
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093422
    reference: chr 15
allele count: 2040
allele frequency: 1.695422359629002e-2
allele num: 120324
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.792C>T
  hgvsp: ENST00000220003.9:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.329C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.792C>T
  hgvsp: ENST00000309470.9:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.792C>T
  hgvsp: ENST00000567571.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.267C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.644C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.792C>T
  hgvsp: ENST00000439220.2:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.230C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.915C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 12176
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 31835
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 1494
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36756
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile264Ile
num of homozygotes: 26
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

15-75093423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093423
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093423
    reference: chr 15
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.793G>A
  hgvsp: ENSP00000438808.1:p.Val265Ile
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.793G>A
  hgvsp: ENSP00000220003.9:p.Val265Ile
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.268G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.645G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.793G>A
  hgvsp: ENSP00000454906.1:p.Val265Ile
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.916G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.231G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.330G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.793G>A
  hgvsp: ENSP00000414764.2:p.Val265Ile
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val265Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

15-75093426-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093426
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093426
    reference: chr 15
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.796A>G
  hgvsp: ENSP00000414764.2:p.Thr266Ala
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.648A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.796A>G
  hgvsp: ENSP00000220003.9:p.Thr266Ala
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.919A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.234A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.796A>G
  hgvsp: ENSP00000454906.1:p.Thr266Ala
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.333A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.271A>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.796A>G
  hgvsp: ENSP00000438808.1:p.Thr266Ala
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr266Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ

15-75093427-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093427
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093427
    reference: chr 15
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.235C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.920C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.649C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.272C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.797C>G
  hgvsp: ENSP00000414764.2:p.Thr266Ser
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.797C>G
  hgvsp: ENSP00000438808.1:p.Thr266Ser
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.797C>G
  hgvsp: ENSP00000220003.9:p.Thr266Ser
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.797C>G
  hgvsp: ENSP00000454906.1:p.Thr266Ser
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.334C>G
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr266Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

15-75093436-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093436
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093436
    reference: chr 15
allele count: 2
allele frequency: 1.664752201634787e-5
allele num: 120138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.658T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.929T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.806T>G
  hgvsp: ENSP00000438808.1:p.Met269Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.806T>G
  hgvsp: ENSP00000220003.9:p.Met269Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.343T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.806T>G
  hgvsp: ENSP00000414764.2:p.Met269Arg
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.281T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.244T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.806T>G
  hgvsp: ENSP00000454906.1:p.Met269Arg
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met269Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

15-75093444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093444
    reference: chr 15
allele count: 1
allele frequency: 8.345294922722569e-6
allele num: 119828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+1G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+1G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6590
  bin: 6.75e1
  variant carriers: 0
hgvs: c.813+1G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-75093445-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093445
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093445
    reference: chr 15
allele count: 13
allele frequency: 1.087611270999264e-4
allele num: 119528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+2T>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+2T>G
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 8.25e1
  variant carriers: 0
hgvs: c.813+2T>G
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

15-75093448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093448
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093448
    reference: chr 15
allele count: 1
allele frequency: 8.452513777597457e-6
allele num: 118308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+5G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+5G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30626
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
hgvs: c.813+5G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-75093448-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093448
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093448
    reference: chr 15
allele count: 4
allele frequency: 3.381005511038983e-5
allele num: 118308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+5G>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+5G>C
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30626
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 7.25e1
  variant carriers: 0
hgvs: c.813+5G>C
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-75093450-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093450
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093450
    reference: chr 15
allele count: 946
allele frequency: 8.647482540495082e-3
allele num: 109396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+7A>C
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+7A>C
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 28194
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 5.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 280
genotype quality: GenotypeQuality
  all individuals: 31262
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 7.25e1
  variant carriers: 20
hgvs: c.813+7A>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

15-75093456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093456
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093456
    reference: chr 15
allele count: 1
allele frequency: 8.351009637065121e-6
allele num: 119746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+13C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+13C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

15-75093457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093457
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093457
    reference: chr 15
allele count: 1
allele frequency: 8.349475652928997e-6
allele num: 119768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+14G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+14G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-75093461-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093461
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093461
    reference: chr 15
allele count: 2
allele frequency: 1.670871693762636e-5
allele num: 119698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+18C>G
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+18C>G
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

15-75093463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093463
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093463
    reference: chr 15
allele count: 9
allele frequency: 7.522064723188018e-5
allele num: 119648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+20C>T
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+20C>T
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

15-75093464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75093464
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75093464
    reference: chr 15
allele count: 1
allele frequency: 8.358967500334358e-6
allele num: 119632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000566464
  gene symbol: CSK
  hgvsc: ENST00000566464.1:n.350+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000414764
  ensembl transcript: ENST00000439220
  gene symbol: CSK
  hgvsc: ENST00000439220.2:c.813+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000564216
  gene symbol: CSK
  hgvsc: ENST00000564216.1:n.288+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000568329
  gene symbol: CSK
  hgvsc: ENST00000568329.1:n.936+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000569321
  gene symbol: CSK
  hgvsc: ENST00000569321.1:n.251+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000454906
  ensembl transcript: ENST00000567571
  gene symbol: CSK
  hgvsc: ENST00000567571.1:c.813+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000438808
  ensembl transcript: ENST00000309470
  gene symbol: CSK
  hgvsc: ENST00000309470.9:c.813+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl protein: ENSP00000220003
  ensembl transcript: ENST00000220003
  gene symbol: CSK
  hgvsc: ENST00000220003.9:c.813+21G>A
  variant of: http://identifiers.org/hgnc/2444
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103653
  ensembl transcript: ENST00000567135
  gene symbol: CSK
  hgvsc: ENST00000567135.1:n.665+21G>A
  variant of: http://identifiers.org/hgnc/2444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G

GenotypeQuality
all individuals: 5218
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 937
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 332
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 9.75e1
variant carriers: 24

Latino
type: Population
allele count: 1
allele frequency: 7.692307692307692e-4
allele num: 1300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 1.311084624553039e-2
allele num: 1678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.80534e5

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.172e0

QD
type: SiteQuality
SIO_000300: 1.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 2270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9918
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1390
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 5.656108597285068e-4
allele num: 1768
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.182e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 1.3578e1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
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SIO_000300: 5.88312e5

VQSLOD
type: SiteQuality
SIO_000300: -1.701e0

South Asian
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allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1724e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.3e-2

BaseQRankSum
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SIO_000300: -5.3e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.044e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

DP
type: SiteQuality
SIO_000300: 5.98759e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 2.499687539057618e-4
allele num: 16002
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.1724e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 3.749531308586427e-4
allele num: 16002
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.98759e5

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
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SIO_000300: 3.7e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.1724e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.044e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

VQSLOD
type: SiteQuality
SIO_000300: -1.845e0

QD
type: SiteQuality
SIO_000300: 1.661e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e0

FS
type: SiteQuality
SIO_000300: 4.26e0

MQRankSum
type: SiteQuality
SIO_000300: -1.221e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 6.15861e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.845869866174435e-4
allele num: 21670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.387e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

DP
type: SiteQuality
SIO_000300: 6.76298e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 68

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2612
num of homozygotes: 0

European (Finnish)
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allele count: 46
allele frequency: 3.225806451612903e-2
allele num: 1426
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 25
allele frequency: 1.121579183490354e-3
allele num: 22290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 7.936507936507936e-3
allele num: 378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.86136e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

African
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allele frequency: 2.217294900221729e-4
allele num: 4510
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 23876
num of homozygotes: 0

Latino
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allele num: 2576
num of homozygotes: 0

FS
type: SiteQuality
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DP
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SIO_000300: 7.09129e5

MQRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 25838
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African
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Other
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European (Finnish)
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South Asian
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 33996
num of homozygotes: 0

African
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East Asian
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Latino
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European (Finnish)
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Other
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South Asian
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 11994
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5958
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European (Non-Finnish)
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allele frequency: 5.549081626990733e-5
allele num: 36042
num of homozygotes: 0

QD
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FS
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ClippingRankSum
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SIO_000300: 9.95e-1

BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45146
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13214
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
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allele frequency: 1.480165778567199e-4
allele num: 6756
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

BaseQRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.163940102137973e-5
allele num: 46212
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.463057790782736e-4
allele num: 13670
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48404
num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

DP
type: SiteQuality
SIO_000300: 1.072902e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.892648951472481e-5
allele num: 52836
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.804077214504781e-5
allele num: 55430
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East Asian
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African
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 59766
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Latino
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African
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 60914
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Other
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MQRankSum
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MQ
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DP
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Latino
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East Asian
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Other
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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SIO_000300: 1.310791e6

VQSLOD
type: SiteQuality
SIO_000300: -7.354000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61706
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.118195297606439e-4
allele num: 9442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 2.268e1

DP
type: SiteQuality
SIO_000300: 1.328232e6

VQSLOD
type: SiteQuality
SIO_000300: -1.003e0

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615039245453664e-5
allele num: 61918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.752e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 1.335e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 7.9e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.117432530999271e-5
allele num: 10968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.650523241664638e-4
allele num: 8218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.674e0

DP
type: SiteQuality
SIO_000300: 1.351281e6

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.108e0

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64246
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.02388180530257e-4
allele num: 9882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.147e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

DP
type: SiteQuality
SIO_000300: 1.39458e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.385e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

QD
type: SiteQuality
SIO_000300: 2.381e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.677e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 5.726e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.398541e6

QD
type: SiteQuality
SIO_000300: 1.049e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.008674601573532e-4
allele num: 9914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.401147e6

QD
type: SiteQuality
SIO_000300: 1.409e1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.881e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.237e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.183e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.676393565282454e-5
allele num: 64152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.372e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.405927e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64050
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 1.348e0

QD
type: SiteQuality
SIO_000300: 9.52e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

DP
type: SiteQuality
SIO_000300: 1.406299e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
all individuals: 514
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variant carriers: 3

GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 41622
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GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6623
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64180
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.407331e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 1.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.474e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

GenotypeQuality
all individuals: 41642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557729453548508e-5
allele num: 64196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 7.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

DP
type: SiteQuality
SIO_000300: 1.410484e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.333468155937898e-4
allele num: 64282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

MQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.031e1

DP
type: SiteQuality
SIO_000300: 1.412619e6

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 20

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600554785020804e-4
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.642952644507323e-4
allele num: 64322
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.415358e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 1718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 1625
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 58
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GenotypeQuality
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GenotypeQuality
all individuals: 584
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6685
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 41993
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.415666e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

FS
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
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GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 6686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551253412757508e-5
allele num: 64464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

DP
type: SiteQuality
SIO_000300: 1.416925e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 3.688e0

QD
type: SiteQuality
SIO_000300: 1.108e1

GenotypeQuality
all individuals: 280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.387e0

DP
type: SiteQuality
SIO_000300: 1.416925e6

QD
type: SiteQuality
SIO_000300: 1.108e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 3.688e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 60
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018952516812716e-4
allele num: 9814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.713e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.423376e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 1722
bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088326127239036e-5
allele num: 64760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031772980839195e-4
allele num: 16492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.216e1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

DP
type: SiteQuality
SIO_000300: 1.42461e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeQuality
all individuals: 6748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

QD
type: SiteQuality
SIO_000300: 1.644e1

DP
type: SiteQuality
SIO_000300: 1.426086e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

GenotypeQuality
all individuals: 1729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539029795616843e-5
allele num: 64976
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

VQSLOD
type: SiteQuality
SIO_000300: -3.207e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.428247e6

FS
type: SiteQuality
SIO_000300: 4.136e0

QD
type: SiteQuality
SIO_000300: 1.401e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e0

GenotypeQuality
all individuals: 716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42873
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536806516059628e-5
allele num: 65070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.12e0

FS
type: SiteQuality
SIO_000300: 1.751e0

QD
type: SiteQuality
SIO_000300: 1.417e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.15e0

DP
type: SiteQuality
SIO_000300: 1.430493e6

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 42834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65286
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.876e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 7.857e0

VQSLOD
type: SiteQuality
SIO_000300: -1.391e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.607e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.433765e6

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.060537430372773e-5
allele num: 65348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.924e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

FS
type: SiteQuality
SIO_000300: 5.749e0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 1.436148e6

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.07e-1

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
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GenotypeQuality
all individuals: 1752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.993e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

DP
type: SiteQuality
SIO_000300: 1.437122e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.536e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 8.75e1
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GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528257480820369e-5
allele num: 65434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.438244e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.042e0

FS
type: SiteQuality
SIO_000300: 1.638e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.564e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

VQSLOD
type: SiteQuality
SIO_000300: -5.918e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41922
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6633
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 706
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2282
bin: 9.75e1
variant carriers: 1679

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2769
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 106
bin: 7.5e0
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GenotypeQuality
all individuals: 2485
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1769
allele frequency: 1.734994115339349e-1
allele num: 10196
num of homozygotes: 166

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.290775809407453e-4
allele num: 65480
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.355704697986577e-3
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 80
allele frequency: 6.921612735767434e-3
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.505e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

FS
type: SiteQuality
SIO_000300: 1.807e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

QD
type: SiteQuality
SIO_000300: 1.517e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.65857e6

GenotypeQuality
all individuals: 683
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
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GenotypeQuality
all individuals: 1345
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42303
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.57331016189518e-5
allele num: 65598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.488203e6

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.505e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.668e0

FS
type: SiteQuality
SIO_000300: 1.1047e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.488425e6

QD
type: SiteQuality
SIO_000300: 1.132e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65754
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.971e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.47e1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.761e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.491719e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1990
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2233
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12134
bin: 9.75e1
variant carriers: 11078

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 614
bin: 2.25e1
variant carriers: 2

African
type: Population
allele count: 502
allele frequency: 4.892787524366472e-2
allele num: 10260
num of homozygotes: 13

East Asian
type: Population
allele count: 1480
allele frequency: 1.718931475029036e-1
allele num: 8610
num of homozygotes: 137

European (Non-Finnish)
type: Population
allele count: 2445
allele frequency: 3.715127940193278e-2
allele num: 65812
num of homozygotes: 52

Other
type: Population
allele count: 99
allele frequency: 1.102449888641425e-1
allele num: 898
num of homozygotes: 8

Latino
type: Population
allele count: 2097
allele frequency: 1.81307279958499e-1
allele num: 11566
num of homozygotes: 212

European (Finnish)
type: Population
allele count: 409
allele frequency: 6.18385243423042e-2
allele num: 6614
num of homozygotes: 18

South Asian
type: Population
allele count: 5588
allele frequency: 3.385435599176057e-1
allele num: 16506
num of homozygotes: 1079

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 2.548e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.919775e6

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.347e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

GenotypeQuality
all individuals: 3151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
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variant carriers: 0

GenotypeQuality
all individuals: 2674
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 628
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 6907
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4321
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2186
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.717e0

FS
type: SiteQuality
SIO_000300: 2.527e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.92e-1

QD
type: SiteQuality
SIO_000300: 1.066e1

DP
type: SiteQuality
SIO_000300: 1.637146e6

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 38002
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 621
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 9.75e1
variant carriers: 215

GenotypeQuality
all individuals: 1032
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 48
allele frequency: 5.580097651708905e-3
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.11358574610245e-2
allele num: 898
num of homozygotes: 1

South Asian
type: Population
allele count: 12
allele frequency: 7.26920281075842e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 7.898414241448448e-4
allele num: 65836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 95
allele frequency: 1.436347142425159e-2
allele num: 6614
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

DP
type: SiteQuality
SIO_000300: 1.666053e6

QD
type: SiteQuality
SIO_000300: 1.279e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 2.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6909
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variant carriers: 0

GenotypeQuality
all individuals: 3155
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.333e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 1.640315e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 609
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
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variant carriers: 0

GenotypeQuality
all individuals: 3154
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variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6913
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036560184622859e-5
allele num: 65864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.640594e6

FS
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.171e1

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.874e0

VQSLOD
type: SiteQuality
SIO_000300: -1.617e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.640504e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.192e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 2194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 3.6e0

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

DP
type: SiteQuality
SIO_000300: 1.639938e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -4.009e-1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6219
bin: 9.75e1
variant carriers: 2010

GenotypeQuality
all individuals: 3034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 324
allele frequency: 4.898699727850015e-2
allele num: 6614
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 1341
allele frequency: 2.035951780888471e-2
allele num: 65866
num of homozygotes: 11

Latino
type: Population
allele count: 98
allele frequency: 8.477508650519031e-3
allele num: 11560
num of homozygotes: 1

South Asian
type: Population
allele count: 237
allele frequency: 1.43584151217739e-2
allele num: 16506
num of homozygotes: 7

East Asian
type: Population
allele count: 3
allele frequency: 3.486750348675035e-4
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 16
allele frequency: 1.801801801801802e-2
allele num: 888
num of homozygotes: 1

African
type: Population
allele count: 21
allele frequency: 2.04160995527902e-3
allele num: 10286
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 1.824997e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 1.257e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
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variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5000
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1313
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.662489e6

MQRankSum
type: SiteQuality
SIO_000300: -1.485e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.251e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

QD
type: SiteQuality
SIO_000300: 1.193e1

GenotypeQuality
all individuals: 6846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2680
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variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 37029
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519156564275514e-5
allele num: 65826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.345e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.04e0

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

DP
type: SiteQuality
SIO_000300: 1.661528e6

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

FS
type: SiteQuality
SIO_000300: 7.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

DP
type: SiteQuality
SIO_000300: 1.660998e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

GenotypeQuality
all individuals: 4999
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043213633597079e-5
allele num: 65720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.069e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 3.0e-1

DP
type: SiteQuality
SIO_000300: 1.653499e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

GenotypeQuality
all individuals: 2640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65488
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.003e0

QD
type: SiteQuality
SIO_000300: 6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.408e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.653355e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5001
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.867771857114664e-5
allele num: 10134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.581551618814905e-4
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.071286461999939e-4
allele num: 65342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.932e0

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

DP
type: SiteQuality
SIO_000300: 1.655014e6

VQSLOD
type: SiteQuality
SIO_000300: -2.978e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.539e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6475
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.897e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 2.0109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.593e0

QD
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

DP
type: SiteQuality
SIO_000300: 1.671944e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009489198465576e-4
allele num: 9906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.6455449224194e-5
allele num: 64578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.52e0

FS
type: SiteQuality
SIO_000300: 2.0109e1

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 1.671944e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

GenotypeQuality
all individuals: 2016
bin: 8.25e1
variant carriers: 7

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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bin: 9.75e1
variant carriers: 773

East Asian
type: Population
allele count: 83
allele frequency: 1.019405551461557e-2
allele num: 8142
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.285976729944887e-3
allele num: 16330
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.72133526850508e-3
allele num: 11024
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 1.042407012556266e-2
allele num: 8442
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.424870466321244e-2
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 507
allele frequency: 8.52616709269474e-3
allele num: 59464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 206
allele frequency: 3.944848716966679e-2
allele num: 5222
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.808038e6

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.362e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

FS
type: SiteQuality
SIO_000300: 5.8938e1

QD
type: SiteQuality
SIO_000300: 2.83e0

VQSLOD
type: SiteQuality
SIO_000300: -1.587e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7080
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527323823196994e-5
allele num: 65474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.042e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 1.722207e6

QD
type: SiteQuality
SIO_000300: 3.302e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

FS
type: SiteQuality
SIO_000300: 1.0951e1

GenotypeQuality
all individuals: 332
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2356
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.974e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.91e0

QD
type: SiteQuality
SIO_000300: 1.593e1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

DP
type: SiteQuality
SIO_000300: 1.72185e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213592233009709e-4
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.718848e6

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
allele count: 1
allele frequency: 9.844457570387872e-5
allele num: 10158
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.069943751528491e-4
allele num: 65424
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.716103e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.236e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0