http://identifiers.org/exac.variant/15-38230365-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230365
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230365
    reference: chr 15
allele count: 1
allele frequency: 3.51493848857645e-5
allele num: 28450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.322A>C
  hgvsp: ENST00000559502.1:c.322A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.322A>C
  hgvsp: ENST00000558158.1:c.322A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.322A>C
  hgvsp: ENST00000558625.1:c.322A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.322A>C
  hgvsp: ENST00000319669.4:c.322A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.322A>C
  hgvsp: ENST00000560653.1:c.322A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.322A>C
  hgvsp: ENST00000540944.1:c.322A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.424A>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg108Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

15-38230376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230376
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230376
    reference: chr 15
allele count: 2
allele frequency: 6.416014371872192e-5
allele num: 31172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.333A>G
  hgvsp: ENST00000558158.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.333A>G
  hgvsp: ENST00000319669.4:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.333A>G
  hgvsp: ENST00000558625.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.333A>G
  hgvsp: ENST00000559502.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.435A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.333A>G
  hgvsp: ENST00000560653.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.333A>G
  hgvsp: ENST00000540944.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11843
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln111Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS

15-38230381-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230381
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230381
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 32246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.338T>C
  hgvsp: ENSP00000453047.1:p.Ile113Thr
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.338T>C
  hgvsp: ENSP00000445914.1:p.Ile113Thr
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.338T>C
  hgvsp: ENSP00000454112.1:p.Ile113Thr
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.338T>C
  hgvsp: ENSP00000453561.1:p.Ile113Thr
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.338T>C
  hgvsp: ENSP00000453271.1:p.Ile113Thr
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.440T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.338T>C
  hgvsp: ENSP00000327234.4:p.Ile113Thr
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile113Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

15-38230388-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230388
    reference: chr 15
allele count: 1
allele frequency: 2.981336831435216e-5
allele num: 33542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.345T>C
  hgvsp: ENST00000540944.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.447T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.345T>C
  hgvsp: ENST00000558158.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.345T>C
  hgvsp: ENST00000558625.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.345T>C
  hgvsp: ENST00000559502.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.345T>C
  hgvsp: ENST00000319669.4:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.345T>C
  hgvsp: ENST00000560653.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32049
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn115Asn
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

15-38230419-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230419
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230419
    reference: chr 15
allele count: 1
allele frequency: 2.950026550238952e-5
allele num: 33898
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.376G>C
  hgvsp: ENSP00000327234.4:p.Glu126Gln
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.376G>C
  hgvsp: ENSP00000453561.1:p.Glu126Gln
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.478G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.376G>C
  hgvsp: ENSP00000445914.1:p.Glu126Gln
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.376G>C
  hgvsp: ENSP00000454112.1:p.Glu126Gln
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.376G>C
  hgvsp: ENSP00000453047.1:p.Glu126Gln
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.376G>C
  hgvsp: ENSP00000453271.1:p.Glu126Gln
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu126Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

15-38230426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230426
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230426
    reference: chr 15
allele count: 2
allele frequency: 6.51890482398957e-5
allele num: 30680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.485C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.383C>T
  hgvsp: ENSP00000454112.1:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.383C>T
  hgvsp: ENSP00000453047.1:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.383C>T
  hgvsp: ENSP00000327234.4:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.383C>T
  hgvsp: ENSP00000445914.1:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.383C>T
  hgvsp: ENSP00000453561.1:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.383C>T
  hgvsp: ENSP00000453271.1:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23080
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr128Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-38230434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230434
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230434
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 25330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+4A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+4A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+4A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+4A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+4A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+4A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+4A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19282
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
hgvs: c.387+4A>G
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-38230437-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230437
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230438
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 32292
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+14dupA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+14dupA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+14dupA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+14dupA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+14dupA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+14dupA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+14dupA
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21656
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8812
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-38230437-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230437
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230436
    reference: chr 15
allele count: 9468
allele frequency: 2.931995540691193e-1
allele num: 32292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+14delA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+14delA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+14delA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+14delA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+14delA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+14delA
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+14delA
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 676
genotype depth: GenotypeDepth
  all individuals: 21656
  bin: 7.5e0
  variant carriers: 7252
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 1.25e1
  variant carriers: 3199
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 9.75e1
  variant carriers: 1042
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 2.5e0
  variant carriers: 1600
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 340
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 6.25e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 10717
  bin: 2.25e1
  variant carriers: 702
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.75e1
  variant carriers: 247
genotype quality: GenotypeQuality
  all individuals: 15170
  bin: 7.5e0
  variant carriers: 687
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 294
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 2.5e0
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 85
hgvs: c.387+14delA
num of homozygotes: 1395
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: GA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-38230444-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230444
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 28168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+14A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+14A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+14A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+14A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+14A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+14A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+14A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-38230444-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230443
    reference: chr 15
allele count: 296
allele frequency: 1.050837830161886e-2
allele num: 28168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+15delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+15delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+15delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+15delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+15delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+15delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+15delC
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 26039
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 7.5e0
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 9.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 25604
  bin: 7.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.75e1
  variant carriers: 10
num of homozygotes: 11
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: AC
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-38230450-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230450
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230450
    reference: chr 15
allele count: 2
allele frequency: 7.487832272557094e-5
allele num: 26710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+20C>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+20C>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+20C>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+20C>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+20C>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+20C>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+20C>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

15-38230461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230461
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230461
    reference: chr 15
allele count: 1
allele frequency: 4.085968783198496e-5
allele num: 24474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+31T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+31T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+31T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+31T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+31T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+31T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+31T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

15-38230467-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230467
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230467
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+37A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+37A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+37A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+37A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+37A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+37A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+37A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13072
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29971
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

15-38230468-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230468
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230468
    reference: chr 15
allele count: 1
allele frequency: 4.209817293929443e-5
allele num: 23754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+38T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+38T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+38T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+38T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+38T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+38T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+38T>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-38230472-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230472
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230471
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23428
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+44delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+44delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+44delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+44delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+44delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+44delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+44delC
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13020
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26458
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AC
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ

15-38230473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230473
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230473
    reference: chr 15
allele count: 1
allele frequency: 4.276428327061238e-5
allele num: 23384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+43C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+43C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+43C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+43C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+43C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+43C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+43C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26634
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

15-38230475-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230475
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230475
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+45A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

15-38230477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38230477
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38230477
    reference: chr 15
allele count: 1
allele frequency: 4.333506673600278e-5
allele num: 23076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.387+47G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.489+47G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.387+47G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.387+47G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.387+47G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.387+47G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.387+47G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6323
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

15-38233299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233299
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233299
    reference: chr 15
allele count: 1
allele frequency: 8.358827757995218e-6
allele num: 119634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-51C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-51C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-51C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-51C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-51C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-51C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-51C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26742
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

15-38233300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233300
    reference: chr 15
allele count: 1
allele frequency: 8.353521009105338e-6
allele num: 119710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-50C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-50C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-50C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-50C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-50C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-50C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-50C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-38233301-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233301
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233301
    reference: chr 15
allele count: 6572
allele frequency: 5.497557384728635e-2
allele num: 119544
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-49T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-49T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-49T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-49T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-49T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-49T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-49T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 1.75e1
  variant carriers: 608
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 2.25e1
  variant carriers: 1151
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 20406
  bin: 2.75e1
  variant carriers: 1239
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.25e1
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 1.25e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 3.25e1
  variant carriers: 1032
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 9.75e1
  variant carriers: 355
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 9.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 26814
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 5483
  bin: 6.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 194
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

15-38233319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233319
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233319
    reference: chr 15
allele count: 1
allele frequency: 8.347384764353328e-6
allele num: 119798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-31C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-31C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-31C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-31C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-31C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-31C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-31C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

15-38233329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233329
    reference: chr 15
allele count: 3
allele frequency: 2.502753028331164e-5
allele num: 119868
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-21A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-21A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-21A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-21A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-21A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-21A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-21A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

15-38233330-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233330
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233330
    reference: chr 15
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-20G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-20G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-20G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-20G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-20G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-20G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-20G>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-38233334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233334
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233334
    reference: chr 15
allele count: 2
allele frequency: 1.668780455243308e-5
allele num: 119848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-16C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-16C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-16C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-16C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-16C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-16C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-16C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23086
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

15-38233346-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233346
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233346
    reference: chr 15
allele count: 1
allele frequency: 8.340979230961715e-6
allele num: 119890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-4T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-4T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-4T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-4T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-4T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-4T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-4T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6067
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: c.388-4T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

15-38233349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233349
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233349
    reference: chr 15
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.490-1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.388-1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.388-1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.388-1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.388-1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.388-1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.388-1G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
hgvs: c.388-1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-38233353-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233353
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233353
    reference: chr 15
allele count: 1
allele frequency: 8.340283569641367e-6
allele num: 119900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.391A>G
  hgvsp: ENSP00000453561.1:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.493A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.391A>G
  hgvsp: ENSP00000453271.1:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.391A>G
  hgvsp: ENSP00000453047.1:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.391A>G
  hgvsp: ENSP00000445914.1:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.391A>G
  hgvsp: ENSP00000327234.4:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.391A>G
  hgvsp: ENSP00000454112.1:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys131Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

15-38233357-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233357
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233357
    reference: chr 15
allele count: 1
allele frequency: 8.339866228545694e-6
allele num: 119906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.395T>G
  hgvsp: ENSP00000453271.1:p.Leu132Ter
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.395T>G
  hgvsp: ENSP00000453561.1:p.Leu132Ter
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.497T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.395T>G
  hgvsp: ENSP00000445914.1:p.Leu132Ter
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.395T>G
  hgvsp: ENSP00000453047.1:p.Leu132Ter
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.395T>G
  hgvsp: ENSP00000454112.1:p.Leu132Ter
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.395T>G
  hgvsp: ENSP00000327234.4:p.Leu132Ter
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu132Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-38233358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233358
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233358
    reference: chr 15
allele count: 1
allele frequency: 8.340700952508049e-6
allele num: 119894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.396A>G
  hgvsp: ENST00000558158.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.396A>G
  hgvsp: ENST00000540944.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.396A>G
  hgvsp: ENST00000560653.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.396A>G
  hgvsp: ENST00000559502.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.396A>G
  hgvsp: ENST00000319669.4:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.498A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.396A>G
  hgvsp: ENST00000558625.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20641
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu132Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

15-38233375-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233375
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233375
    reference: chr 15
allele count: 1
allele frequency: 8.362882183715796e-6
allele num: 119576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.413C>T
  hgvsp: ENSP00000445914.1:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.413C>T
  hgvsp: ENSP00000453561.1:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.413C>T
  hgvsp: ENSP00000327234.4:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.413C>T
  hgvsp: ENSP00000454112.1:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.413C>T
  hgvsp: ENSP00000453047.1:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.515C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.413C>T
  hgvsp: ENSP00000453271.1:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser138Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-38233376-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233376
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233376
    reference: chr 15
allele count: 142
allele frequency: 1.187608724742406e-3
allele num: 119568
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.414C>A
  hgvsp: ENST00000319669.4:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.414C>A
  hgvsp: ENST00000540944.1:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.414C>A
  hgvsp: ENST00000560653.1:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.516C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.414C>A
  hgvsp: ENST00000558625.1:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.414C>A
  hgvsp: ENST00000558158.1:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.414C>A
  hgvsp: ENST00000559502.1:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 23469
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 20202
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6163
  bin: 9.75e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser138Ser
num of homozygotes: 1
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-38233381-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233381
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233381
    reference: chr 15
allele count: 648
allele frequency: 5.426499405429849e-3
allele num: 119414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.419C>A
  hgvsp: ENSP00000453047.1:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.419C>A
  hgvsp: ENSP00000445914.1:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.419C>A
  hgvsp: ENSP00000453561.1:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.419C>A
  hgvsp: ENSP00000454112.1:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.419C>A
  hgvsp: ENSP00000327234.4:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.521C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.419C>A
  hgvsp: ENSP00000453271.1:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 19990
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 23433
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 9.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 3.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39530
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala140Glu
num of homozygotes: 18
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/15-38233382-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233382
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233382
    reference: chr 15
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.420A>C
  hgvsp: ENST00000558158.1:c.420A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.420A>C
  hgvsp: ENST00000319669.4:c.420A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.420A>C
  hgvsp: ENST00000540944.1:c.420A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.420A>C
  hgvsp: ENST00000559502.1:c.420A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.420A>C
  hgvsp: ENST00000558625.1:c.420A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.420A>C
  hgvsp: ENST00000560653.1:c.420A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.522A>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala140Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

15-38233382-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233382
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233382
    reference: chr 15
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.420A>G
  hgvsp: ENST00000319669.4:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.522A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.420A>G
  hgvsp: ENST00000540944.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.420A>G
  hgvsp: ENST00000560653.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.420A>G
  hgvsp: ENST00000558158.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.420A>G
  hgvsp: ENST00000558625.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.420A>G
  hgvsp: ENST00000559502.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5774
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala140Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

15-38233383-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233383
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233383
    reference: chr 15
allele count: 563
allele frequency: 4.717692604199836e-3
allele num: 119338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.421T>C
  hgvsp: ENSP00000445914.1:p.Cys141Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.523T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.421T>C
  hgvsp: ENSP00000454112.1:p.Cys141Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.421T>C
  hgvsp: ENSP00000327234.4:p.Cys141Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.421T>C
  hgvsp: ENSP00000453561.1:p.Cys141Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.421T>C
  hgvsp: ENSP00000453271.1:p.Cys141Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.421T>C
  hgvsp: ENSP00000453047.1:p.Cys141Arg
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19958
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 23459
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 9.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys141Arg
num of homozygotes: 15
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

15-38233389-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233389
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233386
    reference: chr 15
allele count: 27
allele frequency: 2.269670477471419e-4
allele num: 118960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.430_432delAAG
  hgvsp: ENSP00000453561.1:p.Lys144del
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.430_432delAAG
  hgvsp: ENSP00000454112.1:p.Lys144del
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453271
  ensembl transcript: ENST00000558625
  gene symbol: TMCO5A
  hgvsc: ENST00000558625.1:c.429_431delGAA
  hgvsp: ENSP00000453271.1:p.Lys144del
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.430_432delAAG
  hgvsp: ENSP00000453047.1:p.Lys144del
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.430_432delAAG
  hgvsp: ENSP00000445914.1:p.Lys144del
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.430_432delAAG
  hgvsp: ENSP00000327234.4:p.Lys144del
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.532_534delAAG
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys144del
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: GAGA
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

15-38233402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233402
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233402
    reference: chr 15
allele count: 1
allele frequency: 8.496754239880366e-6
allele num: 117692
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.440T>C
  hgvsp: ENSP00000327234.4:p.Leu147Pro
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.440T>C
  hgvsp: ENSP00000453047.1:p.Leu147Pro
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.542T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.440T>C
  hgvsp: ENSP00000453561.1:p.Leu147Pro
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.440T>C
  hgvsp: ENSP00000445914.1:p.Leu147Pro
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.440T>C
  hgvsp: ENSP00000454112.1:p.Leu147Pro
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5889
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu147Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-38233403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233403
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233403
    reference: chr 15
allele count: 1
allele frequency: 8.5090451149572e-6
allele num: 117522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.441C>T
  hgvsp: ENST00000559502.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.441C>T
  hgvsp: ENST00000540944.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.543C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.441C>T
  hgvsp: ENST00000560653.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.441C>T
  hgvsp: ENST00000558158.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.441C>T
  hgvsp: ENST00000319669.4:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17808
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu147Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-38233412-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233412
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233412
    reference: chr 15
allele count: 1
allele frequency: 8.597565169543985e-6
allele num: 116312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+6A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+6A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+6A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+6A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+6A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+6A>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21650
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
hgvs: c.444+6A>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

15-38233417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233417
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233417
    reference: chr 15
allele count: 1
allele frequency: 8.676187336236963e-6
allele num: 115258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+11G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+11G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+11G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+11G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+11G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+11G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

15-38233425-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233425
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233425
    reference: chr 15
allele count: 2
allele frequency: 1.751558887409795e-5
allele num: 114184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+19A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+19A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+19A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+19A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+19A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+19A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5880
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-38233430-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233430
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233430
    reference: chr 15
allele count: 1
allele frequency: 8.822699040090344e-6
allele num: 113344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+24A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+24A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+24A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+24A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+24A>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+24A>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/15-38233430-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233430
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233429
    reference: chr 15
allele count: 1
allele frequency: 8.822699040090344e-6
allele num: 113344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+25delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+25delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+25delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+25delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+25delC
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+25delC
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21295
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-38233439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233439
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233439
    reference: chr 15
allele count: 1
allele frequency: 8.99814638184534e-6
allele num: 111134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+33C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+33C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+33C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+33C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+33C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+33C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7782
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11936
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum

15-38233441-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233441
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233441
    reference: chr 15
allele count: 1973
allele frequency: 1.773387502696484e-2
allele num: 111256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+35A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+35A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+35A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+35A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+35A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+35A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 2.25e1
  variant carriers: 411
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 3.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15811
  bin: 1.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 1.75e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 2.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 3.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11969
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 6593
  bin: 3.25e1
  variant carriers: 3
num of homozygotes: 26
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

15-38233443-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233443
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233441
    reference: chr 15
allele count: 2
allele frequency: 1.800536559894849e-5
allele num: 111078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+38_444+39delAG
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+38_444+39delAG
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+38_444+39delAG
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+38_546+39delAG
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+38_444+39delAG
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+38_444+39delAG
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5032
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: AAG
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-38233445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233445
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233445
    reference: chr 15
allele count: 3
allele frequency: 2.722174836215814e-5
allele num: 110206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+39G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+39G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+39G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+39G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+39G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+39G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12062
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

15-38233453-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233453
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233453
    reference: chr 15
allele count: 2
allele frequency: 1.87423859057258e-5
allele num: 106710
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+47T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+47T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+47T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+47T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+47T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+47T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7988
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3999
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5761
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-38233457-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233457
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233457
    reference: chr 15
allele count: 1
allele frequency: 9.555296500850421e-6
allele num: 104654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.444+51C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.546+51C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.444+51C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.444+51C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.444+51C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.444+51C>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7941
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

15-38233827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233827
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233827
    reference: chr 15
allele count: 1
allele frequency: 8.322652595835345e-6
allele num: 120154
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-45A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-45A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4643
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28150
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/15-38233837-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233837
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233837
    reference: chr 15
allele count: 1
allele frequency: 8.32251406504877e-6
allele num: 120156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-35C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-35C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-35C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-35C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-35C>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-35C>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28219
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

15-38233837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233837
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233837
    reference: chr 15
allele count: 18
allele frequency: 1.498052531708779e-4
allele num: 120156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-35C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-35C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-35C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-35C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-35C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-35C>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-38233838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233838
    reference: chr 15
allele count: 4
allele frequency: 3.327897766980598e-5
allele num: 120196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-34G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-34G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-34G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-34G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-34G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-34G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28246
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-38233844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233844
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233844
    reference: chr 15
allele count: 909
allele frequency: 7.558371582518459e-3
allele num: 120264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-28T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-28T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-28T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-28T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-28T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-28T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 3.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 3.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9884
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 4.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 5.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 5.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 4.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 37
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

15-38233846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233846
    reference: chr 15
allele count: 1
allele frequency: 8.312966565248474e-6
allele num: 120294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-26T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-26T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-26T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-26T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-26T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-26T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4804
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

15-38233862-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233862
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233862
    reference: chr 15
allele count: 1
allele frequency: 8.299306178003518e-6
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-10G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-10G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-10G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-10G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-10G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-10G>T
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-38233869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233869
    reference: chr 15
allele count: 119547
allele frequency: 9.871269796707017e-1
allele num: 121106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.445-3T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.547-3T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.445-3T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.445-3T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.445-3T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.445-3T>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 7.75e1
  variant carriers: 4764
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 12594
  bin: 9.75e1
  variant carriers: 12590
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.25e1
  variant carriers: 903
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.25e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 5.75e1
  variant carriers: 4383
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 9.25e1
  variant carriers: 2850
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 5027
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 4142
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 1547
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.25e1
  variant carriers: 3831
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 8.75e1
  variant carriers: 3492
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 7.25e1
  variant carriers: 5037
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.25e1
  variant carriers: 2204
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 4.75e1
  variant carriers: 3075
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 6.75e1
  variant carriers: 5238
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 51
hgvs: c.445-3T>C
num of homozygotes: 59105
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

15-38233879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233879
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233879
    reference: chr 15
allele count: 1
allele frequency: 8.265145879824779e-6
allele num: 120990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.554A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.452A>G
  hgvsp: ENSP00000453561.1:p.Lys151Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.452A>G
  hgvsp: ENSP00000327234.4:p.Lys151Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.452A>G
  hgvsp: ENSP00000445914.1:p.Lys151Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.452A>G
  hgvsp: ENSP00000453047.1:p.Lys151Arg
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.452A>G
  hgvsp: ENSP00000454112.1:p.Lys151Arg
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys151Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS

15-38233886-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233886
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233886
    reference: chr 15
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.459T>C
  hgvsp: ENST00000558158.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.459T>C
  hgvsp: ENST00000559502.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.459T>C
  hgvsp: ENST00000560653.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.459T>C
  hgvsp: ENST00000319669.4:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.561T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.459T>C
  hgvsp: ENST00000540944.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr153Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

15-38233890-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233890
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233890
    reference: chr 15
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.463T>C
  hgvsp: ENSP00000453047.1:p.Phe155Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.463T>C
  hgvsp: ENSP00000445914.1:p.Phe155Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.463T>C
  hgvsp: ENSP00000453561.1:p.Phe155Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.565T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.463T>C
  hgvsp: ENSP00000454112.1:p.Phe155Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.463T>C
  hgvsp: ENSP00000327234.4:p.Phe155Leu
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9950
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe155Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

15-38233893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233893
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233893
    reference: chr 15
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.568G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.466G>C
  hgvsp: ENSP00000445914.1:p.Val156Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.466G>C
  hgvsp: ENSP00000454112.1:p.Val156Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.466G>C
  hgvsp: ENSP00000327234.4:p.Val156Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.466G>C
  hgvsp: ENSP00000453561.1:p.Val156Leu
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.466G>C
  hgvsp: ENSP00000453047.1:p.Val156Leu
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30766
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val156Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum

15-38233913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233913
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233913
    reference: chr 15
allele count: 1630
allele frequency: 1.348533986365742e-2
allele num: 120872
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.486T>C
  hgvsp: ENST00000319669.4:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.588T>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.486T>C
  hgvsp: ENST00000560653.1:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.486T>C
  hgvsp: ENST00000558158.1:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.486T>C
  hgvsp: ENST00000540944.1:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.486T>C
  hgvsp: ENST00000559502.1:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14321
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 5.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 24575
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9121
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30781
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp162Asp
num of homozygotes: 18
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-38233920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233920
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233920
    reference: chr 15
allele count: 1
allele frequency: 8.278008642241022e-6
allele num: 120802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.493C>T
  hgvsp: ENSP00000327234.4:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.493C>T
  hgvsp: ENSP00000453561.1:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.595C>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.493C>T
  hgvsp: ENSP00000445914.1:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.493C>T
  hgvsp: ENSP00000453047.1:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.493C>T
  hgvsp: ENSP00000454112.1:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu165Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-38233932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233932
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233932
    reference: chr 15
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.505G>A
  hgvsp: ENSP00000453561.1:p.Val169Ile
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+1G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+1G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
hgvs: c.504+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

15-38233934-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233934
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233934
    reference: chr 15
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+3A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+3A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+3A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+3A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.507A>G
  hgvsp: ENST00000560653.1:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+3A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
hgvs: c.504+3A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

15-38233940-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233940
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233940
    reference: chr 15
allele count: 2
allele frequency: 1.659475605708596e-5
allele num: 120520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+9T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+9T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+9T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+9T>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.513T>G
  hgvsp: ENST00000560653.1:c.513T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+9T>G
  variant of: http://identifiers.org/hgnc/28558
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8558
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu171Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

15-38233952-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233952
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233952
    reference: chr 15
allele count: 2
allele frequency: 1.666250104140632e-5
allele num: 120030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+21G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+21G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+21G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+21G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.517+8G>T
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+21G>T
  variant of: http://identifiers.org/hgnc/28558
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
hgvs: c.517+8G>T
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-38233959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233959
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233959
    reference: chr 15
allele count: 1
allele frequency: 8.352683717278361e-6
allele num: 119722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+28A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+28A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+28A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+28A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.517+15A>G
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+28A>G
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-38233961-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233961
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233961
    reference: chr 15
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.517+17G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+30G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+30G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+30G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+30G>C
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+30G>C
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

15-38233963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38233963
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 38233963
    reference: chr 15
allele count: 1
allele frequency: 8.380122349786308e-6
allele num: 119330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000327234
  ensembl transcript: ENST00000319669
  gene symbol: TMCO5A
  hgvsc: ENST00000319669.4:c.504+32G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453047
  ensembl transcript: ENST00000558158
  gene symbol: TMCO5A
  hgvsc: ENST00000558158.1:c.504+32G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl transcript: ENST00000559813
  gene symbol: TMCO5A
  hgvsc: ENST00000559813.1:n.606+32G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000453561
  ensembl transcript: ENST00000560653
  gene symbol: TMCO5A
  hgvsc: ENST00000560653.1:c.517+19G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000454112
  ensembl transcript: ENST00000559502
  gene symbol: TMCO5A
  hgvsc: ENST00000559502.1:c.504+32G>A
  variant of: http://identifiers.org/hgnc/28558
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166069
  ensembl protein: ENSP00000445914
  ensembl transcript: ENST00000540944
  gene symbol: TMCO5A
  hgvsc: ENST00000540944.1:c.504+32G>A
  variant of: http://identifiers.org/hgnc/28558
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

GenotypeQuality
all individuals: 1340
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30644
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.531254707034192e-5
allele num: 13278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

DP
type: SiteQuality
SIO_000300: 8.72958e5

VQSLOD
type: SiteQuality
SIO_000300: -8.349e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.489e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.577e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.81663258350375e-5
allele num: 14670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.969121140142518e-4
allele num: 3368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

QD
type: SiteQuality
SIO_000300: 1.079e1

VQSLOD
type: SiteQuality
SIO_000300: -1.692e0

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

MQ
type: SiteQuality
SIO_000300: 6.077e1

DP
type: SiteQuality
SIO_000300: 8.98367e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3277
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.08121e5

QD
type: SiteQuality
SIO_000300: 8.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.288517167651868e-5
allele num: 15902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-1

DP
type: SiteQuality
SIO_000300: 9.17519e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

FS
type: SiteQuality
SIO_000300: 2.216e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23521
bin: 2.25e1
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GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3276
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19995
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.778e0

DP
type: SiteQuality
SIO_000300: 8.7837e5

VQSLOD
type: SiteQuality
SIO_000300: -3.068e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

FS
type: SiteQuality
SIO_000300: 3.251e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 2218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
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GenotypeQuality
all individuals: 2854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 1195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14574
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.150061500615006e-4
allele num: 3252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

DP
type: SiteQuality
SIO_000300: 8.64777e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.991e0

FS
type: SiteQuality
SIO_000300: 6.135e0

QD
type: SiteQuality
SIO_000300: 1.022e1

GenotypeQuality
all individuals: 3057
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20581
bin: 7.5e0
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GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 547
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GenotypeQuality
all individuals: 2209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
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variant carriers: 0

GenotypeQuality
all individuals: 448
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variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.821e0

QD
type: SiteQuality
SIO_000300: 7.54e0

DP
type: SiteQuality
SIO_000300: 8.75864e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 15170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.762e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

QD
type: SiteQuality
SIO_000300: 1.555e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

DP
type: SiteQuality
SIO_000300: 9.11061e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 932
bin: 7.75e1
variant carriers: 451

GenotypeQuality
all individuals: 762
bin: 4.25e1
variant carriers: 747

GenotypeQuality
all individuals: 2721
bin: 1.75e1
variant carriers: 1655

GenotypeQuality
all individuals: 1855
bin: 1.25e1
variant carriers: 892

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 78

GenotypeQuality
all individuals: 1447
bin: 6.75e1
variant carriers: 739

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 637

GenotypeQuality
all individuals: 557
bin: 3.25e1
variant carriers: 354

GenotypeQuality
all individuals: 503
bin: 3.75e1
variant carriers: 435

GenotypeQuality
all individuals: 8812
bin: 9.75e1
variant carriers: 6906

GenotypeQuality
all individuals: 1417
bin: 7.25e1
variant carriers: 1115

GenotypeQuality
all individuals: 753
bin: 9.25e1
variant carriers: 440

Other
type: Population
allele count: 77
allele frequency: 2.619047619047619e-1
allele num: 294
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 3602
allele frequency: 2.415180367439989e-1
allele num: 14914
num of homozygotes: 357

Latino
type: Population
allele count: 1387
allele frequency: 5.179238237490664e-1
allele num: 2678
num of homozygotes: 293

European (Finnish)
type: Population
allele count: 393
allele frequency: 3.370497427101201e-1
allele num: 1166
num of homozygotes: 43

East Asian
type: Population
allele count: 313
allele frequency: 2.426356589147287e-1
allele num: 1290
num of homozygotes: 29

South Asian
type: Population
allele count: 1793
allele frequency: 2.167553191489362e-1
allele num: 8272
num of homozygotes: 205

African
type: Population
allele count: 1903
allele frequency: 5.174007612833061e-1
allele num: 3678
num of homozygotes: 460

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.762e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.555e1

DP
type: SiteQuality
SIO_000300: 9.11061e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 1745
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
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GenotypeQuality
all individuals: 501
bin: 9.25e1
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GenotypeQuality
all individuals: 25604
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GenotypeQuality
all individuals: 321
bin: 8.75e1
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GenotypeQuality
all individuals: 2602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 7.25e1
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GenotypeQuality
all individuals: 4019
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13903
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.851e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
SIO_000300: 1.313e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.024e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.63351e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.86e-2

GenotypeQuality
all individuals: 418
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 13903
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4019
bin: 9.75e1
variant carriers: 307

GenotypeQuality
all individuals: 650
bin: 8.25e1
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GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2602
bin: 6.25e1
variant carriers: 11

African
type: Population
allele count: 279
allele frequency: 8.408679927667269e-2
allele num: 3318
num of homozygotes: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 7.692307692307693e-3
allele num: 260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.117206982543641e-4
allele num: 12832
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 5.747126436781609e-3
allele num: 1740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.231223836493475e-4
allele num: 8122
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.851e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

MQ
type: SiteQuality
SIO_000300: 6.024e1

DP
type: SiteQuality
SIO_000300: 7.63351e5

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.86e-2

GenotypeQuality
all individuals: 3835
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.160556257901391e-4
allele num: 3164
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.208832703989493e-5
allele num: 12182
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

InbreedingCoeff
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QD
type: SiteQuality
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DP
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.994e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.258811681772407e-4
allele num: 7944
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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FS
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MQRankSum
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DP
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SIO_000300: 7.07933e5

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2970
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10552
num of homozygotes: 0

Latino
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.8e-2

MQRankSum
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FS
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QD
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ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 6.016e1

ReadPosRankSum
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SIO_000300: -2.493e0

BaseQRankSum
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SIO_000300: -1.708e0

DP
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SIO_000300: 6.92333e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2968
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.56e-1

DP
type: SiteQuality
SIO_000300: 6.85491e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.134e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele num: 2966
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.149e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10304
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Latino
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African
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Other
type: Population
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East Asian
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South Asian
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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FS
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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East Asian
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Other
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South Asian
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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Latino
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Other
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BaseQRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2019
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1267
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2322
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1375
bin: 8.25e1
variant carriers: 22

GenotypeQuality
all individuals: 11542
bin: 9.75e1
variant carriers: 6192

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 23

GenotypeQuality
all individuals: 2248
bin: 7.75e1
variant carriers: 21

European (Non-Finnish)
type: Population
allele count: 4277
allele frequency: 6.490530532961029e-2
allele num: 65896
num of homozygotes: 130

Other
type: Population
allele count: 50
allele frequency: 5.605381165919283e-2
allele num: 892
num of homozygotes: 2

East Asian
type: Population
allele count: 600
allele frequency: 7.163323782234957e-2
allele num: 8376
num of homozygotes: 22

Latino
type: Population
allele count: 271
allele frequency: 2.408460718094561e-2
allele num: 11252
num of homozygotes: 1

South Asian
type: Population
allele count: 609
allele frequency: 3.734363502575423e-2
allele num: 16308
num of homozygotes: 15

African
type: Population
allele count: 282
allele frequency: 2.732558139534884e-2
allele num: 10320
num of homozygotes: 6

European (Finnish)
type: Population
allele count: 483
allele frequency: 7.430769230769231e-2
allele num: 6500
num of homozygotes: 18

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 1.91099e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6064
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.702e0

VQSLOD
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.888713e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6070
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.933488012374323e-4
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513179796023364e-5
allele num: 66086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.93e0

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

FS
type: SiteQuality
SIO_000300: 8.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.611e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.279e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.899932e6

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51336299524804e-5
allele num: 66078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.900553e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 8.56e0

VQSLOD
type: SiteQuality
SIO_000300: -1.132e0

GenotypeQuality
all individuals: 38111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6069
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026542780182198e-5
allele num: 66082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.379e0

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 1.903638e6

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39253
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.120700208103807e-5
allele num: 16338
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.908852e6

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

FS
type: SiteQuality
SIO_000300: 1.475e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.587e0

QD
type: SiteQuality
SIO_000300: 1.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512127260630255e-5
allele num: 66132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.356e0

DP
type: SiteQuality
SIO_000300: 1.910414e6

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 8.186999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.726e-1

QD
type: SiteQuality
SIO_000300: 1.584e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.28e-1

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.499e1

DP
type: SiteQuality
SIO_000300: 1.910967e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

FS
type: SiteQuality
SIO_000300: 1.414e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.911566e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.289e0

VQSLOD
type: SiteQuality
SIO_000300: -1.394e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.592e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39950
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116207951070337e-5
allele num: 16350
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.53e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

FS
type: SiteQuality
SIO_000300: 1.002e1

DP
type: SiteQuality
SIO_000300: 1.91182e6

VQSLOD
type: SiteQuality
SIO_000300: -9.612000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 6062
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.908572e6

VQSLOD
type: SiteQuality
SIO_000300: -1.451e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e0

QD
type: SiteQuality
SIO_000300: 1.692e1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

GenotypeQuality
all individuals: 2098
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 107
allele frequency: 1.276849642004773e-2
allele num: 8380
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.089222072016714e-3
allele num: 16274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

DP
type: SiteQuality
SIO_000300: 1.911504e6

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

QD
type: SiteQuality
SIO_000300: 1.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 689
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5742
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6393
bin: 9.75e1
variant carriers: 621

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.035361966914555e-4
allele num: 65890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 585
allele frequency: 5.680714701883861e-2
allele num: 10298
num of homozygotes: 17

Latino
type: Population
allele count: 40
allele frequency: 3.571428571428571e-3
allele num: 11200
num of homozygotes: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.230920728705071e-4
allele num: 16248
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.275e0

FS
type: SiteQuality
SIO_000300: 5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.68e-2

DP
type: SiteQuality
SIO_000300: 1.914757e6

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.992e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

QD
type: SiteQuality
SIO_000300: 1.633e1

GenotypeQuality
all individuals: 39464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6130
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518326197200206e-5
allele num: 65862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.655e0

VQSLOD
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

DP
type: SiteQuality
SIO_000300: 1.910833e6

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.160670280926565e-5
allele num: 16232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.655e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

DP
type: SiteQuality
SIO_000300: 1.910833e6

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5740
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 239
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39570
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6329
bin: 9.75e1
variant carriers: 541

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1768
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 33
allele frequency: 2.950643776824035e-3
allele num: 11184
num of homozygotes: 1

African
type: Population
allele count: 508
allele frequency: 4.937791601866252e-2
allele num: 10288
num of homozygotes: 14

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.884556992773426e-4
allele num: 65868
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.232285890326556e-4
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

QD
type: SiteQuality
SIO_000300: 1.682e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.52e-2

DP
type: SiteQuality
SIO_000300: 1.911088e6

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5916
bin: 9.75e1
variant carriers: 27

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.187353050365054e-4
allele num: 16162
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.919846412287017e-3
allele num: 8334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.979885057471264e-5
allele num: 11136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.837e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.891336e6

QD
type: SiteQuality
SIO_000300: 1.441e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

FS
type: SiteQuality
SIO_000300: 1.864e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
all individuals: 604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536948235583426e-5
allele num: 65064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.779999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

DP
type: SiteQuality
SIO_000300: 1.86163e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.741e0

QD
type: SiteQuality
SIO_000300: 1.798e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5888
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538935056940597e-5
allele num: 64980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.572e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.133e0

QD
type: SiteQuality
SIO_000300: 1.666e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.857684e6

FS
type: SiteQuality
SIO_000300: 2.671e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 174
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5884
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1792
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555645437291932e-5
allele num: 64282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 1.816309e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

GenotypeQuality
all individuals: 1430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570598397989634e-5
allele num: 63670
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 1.594e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.993e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.77249e6

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeQuality
all individuals: 398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.170577045022194e-5
allele num: 63080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

QD
type: SiteQuality
SIO_000300: 1.247e1

MQ
type: SiteQuality
SIO_000300: 5.799e1

FS
type: SiteQuality
SIO_000300: 1.057e0

DP
type: SiteQuality
SIO_000300: 1.702676e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 1272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5880
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 673
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10956
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.453278265358803e-5
allele num: 15496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

DP
type: SiteQuality
SIO_000300: 1.637247e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 654
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10956
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.284686536485098e-4
allele num: 7784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

QD
type: SiteQuality
SIO_000300: 1.003e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

DP
type: SiteQuality
SIO_000300: 1.637247e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 6373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5868
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.581545346847439e-5
allele num: 15194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.552e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

DP
type: SiteQuality
SIO_000300: 1.557738e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.685e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 374
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2661
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1034
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1201
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 14239
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 7451
bin: 9.75e1
variant carriers: 1891

European (Non-Finnish)
type: Population
allele count: 1554
allele frequency: 2.532016814937921e-2
allele num: 61374
num of homozygotes: 22

African
type: Population
allele count: 47
allele frequency: 4.832407978614024e-3
allele num: 9726
num of homozygotes: 0

South Asian
type: Population
allele count: 96
allele frequency: 6.308319095807596e-3
allele num: 15218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 215
allele frequency: 3.414866581956798e-2
allele num: 6296
num of homozygotes: 4

Other
type: Population
allele count: 11
allele frequency: 1.328502415458937e-2
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

Latino
type: Population
allele count: 50
allele frequency: 4.88663017982799e-3
allele num: 10232
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

QD
type: SiteQuality
SIO_000300: 1.542e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

DP
type: SiteQuality
SIO_000300: 1.541958e6

VQSLOD
type: SiteQuality
SIO_000300: 6.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
all individuals: 5764
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4579
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.264666514315563e-5
allele num: 61262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

FS
type: SiteQuality
SIO_000300: 1.0853e1

DP
type: SiteQuality
SIO_000300: 1.513404e6

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
all individuals: 5763
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1065
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4652
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.102378490175801e-4
allele num: 9670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.456e1

DP
type: SiteQuality
SIO_000300: 1.499025e6

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.41e-1

FS
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

GenotypeQuality
all individuals: 1187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9940
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.109704641350211e-4
allele num: 9480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 1.078e1

FS
type: SiteQuality
SIO_000300: 7.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.461377e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.743496757096032e-5
allele num: 57356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.904e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.457406e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4366
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

QD
type: SiteQuality
SIO_000300: 1.415e1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.796e1

FS
type: SiteQuality
SIO_000300: 2.319e0

DP
type: SiteQuality
SIO_000300: 2.354264e6

VQSLOD
type: SiteQuality
SIO_000300: -8.685e-1

GenotypeQuality
all individuals: 4271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4389
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.369818e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.29e1

FS
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.304e0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28219
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 6990
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.374169040835708e-4
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.54261577915221e-5
allele num: 66290
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215214485356665e-4
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.374045801526718e-3
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

DP
type: SiteQuality
SIO_000300: 2.369818e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.304e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 2675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.940599882376005e-4
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

FS
type: SiteQuality
SIO_000300: 1.103e0

DP
type: SiteQuality
SIO_000300: 2.372062e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 7266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4447
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28685
bin: 9.75e1
variant carriers: 865

GenotypeQuality
all individuals: 364
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4311
bin: 6.75e1
variant carriers: 2

African
type: Population
allele count: 791
allele frequency: 7.735184823000195e-2
allele num: 10226
num of homozygotes: 37

South Asian
type: Population
allele count: 4
allele frequency: 2.428953121204761e-4
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 58
allele frequency: 5.116443189837686e-3
allele num: 11336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 6.48234691108632e-4
allele num: 66334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.303317535545024e-3
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

FS
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 2.390866e6

QD
type: SiteQuality
SIO_000300: 1.834e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 2601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4433
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.29e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: -3.914e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

DP
type: SiteQuality
SIO_000300: 2.392453e6

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
all individuals: 4389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.032e0

QD
type: SiteQuality
SIO_000300: 9.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

DP
type: SiteQuality
SIO_000300: 2.399882e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
all individuals: 152
bin: 6.75e1
variant carriers: 144

GenotypeQuality
all individuals: 58797
bin: 9.75e1
variant carriers: 58771

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 99

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 6.25e1
variant carriers: 122

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 90

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 35

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 29

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 320

South Asian
type: Population
allele count: 16505
allele frequency: 9.996971532404604e-1
allele num: 16510
num of homozygotes: 8250

East Asian
type: Population
allele count: 8586
allele frequency: 1.0e0
allele num: 8586
num of homozygotes: 4293

European (Finnish)
type: Population
allele count: 6606
allele frequency: 1.0e0
allele num: 6606
num of homozygotes: 3303

European (Non-Finnish)
type: Population
allele count: 66645
allele frequency: 9.995350650908873e-1
allele num: 66676
num of homozygotes: 33307

Latino
type: Population
allele count: 11370
allele frequency: 9.949247462373119e-1
allele num: 11428
num of homozygotes: 5657

African
type: Population
allele count: 8936
allele frequency: 8.597267654416009e-1
allele num: 10394
num of homozygotes: 3849

Other
type: Population
allele count: 899
allele frequency: 9.922737306843267e-1
allele num: 906
num of homozygotes: 446

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

DP
type: SiteQuality
SIO_000300: 4.749091e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.285e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 3.498e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

GenotypeQuality
all individuals: 948
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9963
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 4.62e0

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.968e0

DP
type: SiteQuality
SIO_000300: 2.147311e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.1873e1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30722
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.049e1

FS
type: SiteQuality
SIO_000300: 1.855e0

DP
type: SiteQuality
SIO_000300: 2.147117e6

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.147084e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.457e0

QD
type: SiteQuality
SIO_000300: 1.311e1

MQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.909e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9951
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

VQSLOD
type: SiteQuality
SIO_000300: -1.652e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

QD
type: SiteQuality
SIO_000300: 1.964e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 2.147039e6

FS
type: SiteQuality
SIO_000300: 5.235e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10027
bin: 9.75e1
variant carriers: 1606

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.214128035320088e-2
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 919
allele frequency: 1.38083360879887e-2
allele num: 66554
num of homozygotes: 7

Latino
type: Population
allele count: 63
allele frequency: 5.535055350553505e-3
allele num: 11382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 32
allele frequency: 4.854368932038835e-3
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.501924557351809e-3
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 579
allele frequency: 3.507815339876409e-2
allele num: 16506
num of homozygotes: 11

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 1.211e1

DP
type: SiteQuality
SIO_000300: 2.164568e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

FS
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 1426
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 2.07826e6

FS
type: SiteQuality
SIO_000300: 6.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.26e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.828e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

GenotypeQuality
all individuals: 31524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.074535e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.703e0

QD
type: SiteQuality
SIO_000300: 1.221e1

FS
type: SiteQuality
SIO_000300: 2.041e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 9311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8566
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.073332e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

FS
type: SiteQuality
SIO_000300: 5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.099e-1

QD
type: SiteQuality
SIO_000300: 1.599e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 31311
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GenotypeQuality
all individuals: 1413
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.069264e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.484e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 8539
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.941747572815534e-4
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

FS
type: SiteQuality
SIO_000300: 1.391e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

DP
type: SiteQuality
SIO_000300: 2.042905e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

GenotypeQuality
all individuals: 3126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
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variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8531
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516162290011523e-5
allele num: 65956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.169e0

DP
type: SiteQuality
SIO_000300: 2.018566e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.361e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

QD
type: SiteQuality
SIO_000300: 1.655e1

GenotypeQuality
all individuals: 8525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.75e1
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GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51851064475962e-5
allele num: 65854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 2.007252e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.924e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 5.274e0

QD
type: SiteQuality
SIO_000300: 9.66e0

GenotypeQuality
all individuals: 2581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521329033043267e-5
allele num: 65732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.292e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.565e0

QD
type: SiteQuality
SIO_000300: 1.252e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4