11-47270388-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270388
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270388
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 17808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.255A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.203A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-48T>A
  variant of: http://identifiers.org/hgnc/123
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000436487
  ensembl transcript: ENST00000529663
  gene symbol: ACP2
  hgvsc: ENST00000529663.1:c.-48T>A
  variant of: http://identifiers.org/hgnc/123
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.255A>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

11-47270395-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270395
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270395
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 16994
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-55T>C
  variant of: http://identifiers.org/hgnc/123
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.210A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.262A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.262A>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

11-47270401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270401
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270401
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 16204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.216C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.268C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.268C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-61G>A
  variant of: http://identifiers.org/hgnc/123
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34005
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-47270403-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270403
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270403
    reference: chr 11
allele count: 1
allele frequency: 6.316321374431532e-5
allele num: 15832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.218C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.270C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.270C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-63G>C
  variant of: http://identifiers.org/hgnc/123
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32671
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

11-47270416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270416
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270416
    reference: chr 11
allele count: 1
allele frequency: 6.510416666666667e-5
allele num: 15360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-76C>T
  variant of: http://identifiers.org/hgnc/123
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.230+1G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.282+1G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.282+1G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31923
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 9.75e1
  variant carriers: 1
hgvs: n.282+1G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-47270421-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270421
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270419
    reference: chr 11
allele count: 3
allele frequency: 1.977848101265823e-4
allele num: 15168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.282+11_282+12delAC
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.282+11_282+12delAC
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.230+11_230+12delAC
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-83_-82delGT
  variant of: http://identifiers.org/hgnc/123
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 6.75e1
  variant carriers: 0
hgvs: n.282+11_282+12delAC
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: GAC
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

11-47270428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270428
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270428
    reference: chr 11
allele count: 2
allele frequency: 1.334935255640101e-4
allele num: 14982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.282+13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.282+13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134575
  ensembl protein: ENSP00000256997
  ensembl transcript: ENST00000256997
  gene symbol: ACP2
  hgvsc: ENST00000256997.3:c.-88C>T
  variant of: http://identifiers.org/hgnc/123
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.230+13G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-47270465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47270465
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47270465
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 14314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.282+50T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.230+50T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.282+50T>C
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

11-47280717-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280717
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280717
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-37-14G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.-37-14G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-37-14G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.-37-14G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.287G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.-37-14G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.-37-14G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2075G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8747G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-625G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.-32-19G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.61-14G>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-47280718-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280718
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280718
    reference: chr 11
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2074G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-624G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-50G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-624G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-624G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-624G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-624G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.-50G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-624G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.-37-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.280G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8746G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.-32-18G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.61-13G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-624G>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-47280724-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280724
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280724
    reference: chr 11
allele count: 130
allele frequency: 1.070893124866138e-3
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.-44C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.286C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.294C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-618C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-44C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8740C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-618C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-618C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-618C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-618C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-618C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.-37-7C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2068C>A
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-37-7C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-47280727-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280727
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280727
    reference: chr 11
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.-32-9G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.61-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2065G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-615G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.289G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-37-4G>C
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-37-4G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

11-47280750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280750
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-592C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-592C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.80C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.320C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.180C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-592C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-592C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-592C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2042C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.312C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-592C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-47280755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280755
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280755
    reference: chr 11
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-587G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.325G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.317G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.85G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-587G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-587G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8709G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-587G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2037G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-47280762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280762
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280762
    reference: chr 11
allele count: 16187
allele frequency: 1.333294894815742e-1
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.92G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8702G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.332G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-580G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.-6G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1398
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-47280787-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280787
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280787
    reference: chr 11
allele count: 13
allele frequency: 1.073634832017442e-4
allele num: 121084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-555C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-555C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2005C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-555C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.357C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-555C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.20C>G
  hgvsp: ENSP00000415591.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.20C>G
  hgvsp: ENSP00000413095.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.217C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.20C>G
  hgvsp: ENSP00000403696.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.349C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-555C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.20C>G
  hgvsp: ENSP00000420656.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.20C>G
  hgvsp: ENSP00000387946.2:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-555C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.20C>G
  hgvsp: ENSP00000407716.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.20C>G
  hgvsp: ENSP00000403798.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.20C>G
  hgvsp: ENSP00000385801.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.20C>G
  hgvsp: ENSP00000396132.1:p.Ala7Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8677C>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala7Gly
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

11-47280788-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280788
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280788
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.21C>G
  hgvsp: ENST00000444396.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.21C>G
  hgvsp: ENST00000457932.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.218C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.21C>G
  hgvsp: ENST00000420369.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.21C>G
  hgvsp: ENST00000441012.2:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.21C>G
  hgvsp: ENST00000467728.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.118C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.21C>G
  hgvsp: ENST00000436029.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.21C>G
  hgvsp: ENST00000407404.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.21C>G
  hgvsp: ENST00000449369.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.21C>G
  hgvsp: ENST00000405853.3:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-554C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.21C>G
  hgvsp: ENST00000419652.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.21C>G
  hgvsp: ENST00000437276.1:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-554C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-554C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-554C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8676C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-554C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.350C>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala7Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-47280791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280791
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280791
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.361T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.24T>C
  hgvsp: ENST00000437276.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.24T>C
  hgvsp: ENST00000436778.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.24T>C
  hgvsp: ENST00000441012.2:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.24T>C
  hgvsp: ENST00000444396.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.24T>C
  hgvsp: ENST00000419652.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.221T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.24T>C
  hgvsp: ENST00000436029.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.24T>C
  hgvsp: ENST00000407404.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.24T>C
  hgvsp: ENST00000449369.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.353T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-551T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-2001T>C
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro8Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

11-47280804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280804
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280804
    reference: chr 11
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.37C>T
  hgvsp: ENSP00000420656.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.37C>T
  hgvsp: ENSP00000403798.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-538C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.134C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.37C>T
  hgvsp: ENSP00000406692.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.37C>T
  hgvsp: ENSP00000415591.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.37C>T
  hgvsp: ENSP00000396132.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.37C>T
  hgvsp: ENSP00000413095.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-538C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-538C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.37C>T
  hgvsp: ENSP00000403696.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.37C>T
  hgvsp: ENSP00000384745.3:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.37C>T
  hgvsp: ENSP00000407716.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.37C>T
  hgvsp: ENSP00000387946.2:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.37C>T
  hgvsp: ENSP00000391005.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-538C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.37C>T
  hgvsp: ENSP00000385801.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.234C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8660C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1988C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro13Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-47280825-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280825
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8639A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-517A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+15A>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

11-47280827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280827
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280827
    reference: chr 11
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8637C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1965C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-515C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+17C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

11-47280830-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280830
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1962T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-512T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+20T>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+20T>A
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

11-47280835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280835
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-507C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-507C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-507C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8629C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-507C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-507C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-507C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+25C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1957C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-507C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

11-47280840-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280840
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280840
    reference: chr 11
allele count: 5
allele frequency: 4.119498409873614e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1952G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-502G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+30G>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

11-47280843-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280843
    reference: chr 11
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1949C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-499C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+33C>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

11-47280845-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280845
    reference: chr 11
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1947G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-497G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-497G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-497G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-497G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-497G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8619G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-497G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+35G>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-47280848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280848
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280848
    reference: chr 11
allele count: 5
allele frequency: 4.120041530018623e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8616C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+38C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-494C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+38C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-47280849-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280849
    reference: chr 11
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8615G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+39G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-493G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1943G>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-493G>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

11-47280859-C-CGCCTCCTGTAGGAATCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280876
    reference: chr 11
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: CGCCTCCTGTAGGAATCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

11-47280859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280859
    reference: chr 11
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-483C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-483C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-483C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8605C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-483C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-483C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+49C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-483C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1933C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

11-47280860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280860
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280860
    reference: chr 11
allele count: 101
allele frequency: 8.335258970719308e-4
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8604G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-482G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+50G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+50G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-47280861-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280861
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280861
    reference: chr 11
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-481C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-481C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8603C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-481C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-481C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-481C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-481C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+51C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1931C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-481C>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-47280861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280861
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280861
    reference: chr 11
allele count: 37
allele frequency: 3.053661918359936e-4
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1931C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8603C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-481C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+51C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+51C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-47280866-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280866
    reference: chr 11
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1926T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8598T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-476T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+56T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.44-46T>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+56T>C
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-47280866-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280866
    reference: chr 11
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-476T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+56T>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-476T>G
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

11-47280879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280879
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280879
    reference: chr 11
allele count: 3
allele frequency: 2.498917135907773e-5
allele num: 120052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1913C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8585C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-463C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+69C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

11-47280901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280901
    reference: chr 11
allele count: 1
allele frequency: 8.978595029449791e-6
allele num: 111376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-441C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8563C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-441C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-441C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-441C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.44-11C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-441C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+91C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-441C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-441C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

11-47280909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280909
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280909
    reference: chr 11
allele count: 2
allele frequency: 1.933824524762623e-5
allele num: 103422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.44-3C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-433C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+99C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-433C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.44-3C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

11-47280914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280914
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280914
    reference: chr 11
allele count: 1
allele frequency: 1.040084870925467e-5
allele num: 96146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8550A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.46A>G
  hgvsp: ENSP00000407716.1:p.Ser16Gly
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1878A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-428A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+104A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-428A>G
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser16Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

11-47280915-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280915
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280915
    reference: chr 11
allele count: 1
allele frequency: 1.041211136794319e-5
allele num: 96042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.47G>C
  hgvsp: ENSP00000407716.1:p.Ser16Thr
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8549G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+105G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-427G>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+105G>C
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser16Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

11-47280917-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280917
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280917
    reference: chr 11
allele count: 2
allele frequency: 2.12988008775106e-5
allele num: 93902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8547A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.49A>T
  hgvsp: ENSP00000407716.1:p.Ser17Cys
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-425A>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+107A>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser17Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-47280921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280921
    reference: chr 11
allele count: 1
allele frequency: 1.112074909365895e-5
allele num: 89922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8543C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.53C>T
  hgvsp: ENSP00000407716.1:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1871C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-421C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+111C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-421C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro18Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

11-47280921-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280919
    reference: chr 11
allele count: 1
allele frequency: 1.112074909365895e-5
allele num: 89922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-418_231-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-418_-92-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+114_380+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+114_372+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-418_130-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-418_77-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-418_283-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-418_283-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-418_-92-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8540_74-8539delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.56_57delAG
  hgvsp: ENSP00000407716.1:p.Glu19ValfsTer74
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+114_43+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-418_-92-417delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+114_140+115delAG
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+114_240+115delAG
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu19ValfsTer74
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: CAG
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-47280930-TCTTAGTCG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280930
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280922
    reference: chr 11
allele count: 1
allele frequency: 1.255871197849948e-5
allele num: 79626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.63_70delCTTAGTCG
  hgvsp: ENSP00000407716.1:p.Leu22AlafsTer69
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu22AlafsTer69
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: TCTTAGTCG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

11-47280937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280937
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280937
    reference: chr 11
allele count: 1
allele frequency: 1.446801122717671e-5
allele num: 69118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.69C>T
  hgvsp: ENST00000419652.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-405C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-405C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8527C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-405C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-405C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+127C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-405C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-405C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-405C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val23Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-47280938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280938
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280938
    reference: chr 11
allele count: 4
allele frequency: 5.932429626553555e-5
allele num: 67426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-404G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1854G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-404G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-404G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-404G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-404G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.70G>A
  hgvsp: ENSP00000407716.1:p.Val24Met
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-404G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8526G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+128G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-404G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val24Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-47280940-G-GGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280940
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280942
    reference: chr 11
allele count: 1
allele frequency: 1.547029702970297e-5
allele num: 64640
alternate allele: GGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+130_372+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-402_-92-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.72_73insGA
  hgvsp: ENSP00000407716.1:p.Leu25AspfsTer37
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-402_283-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8524_74-8523insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-402_283-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+130_240+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-402_77-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-402_130-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-402_231-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-402_-92-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+130_140+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1852_74-1851insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-402_-92-401insGA
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+130_43+131insGA
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu25AspfsTer37
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

11-47280941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280941
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280941
    reference: chr 11
allele count: 1
allele frequency: 1.622902398649745e-5
allele num: 61618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-401C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-401C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-401C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.73C>T
  hgvsp: ENSP00000407716.1:p.Leu25Phe
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-401C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-401C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8523C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+131C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1851C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-401C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu25Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

11-47280950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280950
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280950
    reference: chr 11
allele count: 9
allele frequency: 1.87985629542986e-4
allele num: 47876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1842C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-392C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-392C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-392C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.82C>T
  hgvsp: ENSP00000407716.1:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-392C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-392C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-392C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+140C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8514C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg28Cys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

11-47280951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280951
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280951
    reference: chr 11
allele count: 1
allele frequency: 2.190100744634253e-5
allele num: 45660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.83G>A
  hgvsp: ENSP00000407716.1:p.Arg28His
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-391G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1841G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+141G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-391G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg28His
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-47280968-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280968
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280968
    reference: chr 11
allele count: 1
allele frequency: 3.151194302640701e-5
allele num: 31734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-374C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.100C>G
  hgvsp: ENSP00000407716.1:p.Pro34Ala
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-374C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-374C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8496C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-374C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-374C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+158C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-374C>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-374C>G
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro34Ala
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

11-47280988-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47280988
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47280989
    reference: chr 11
allele count: 2
allele frequency: 9.266981744045964e-5
allele num: 21582
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1802dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8474dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.122dupT
  hgvsp: ENSP00000407716.1:p.Leu41PhefsTer53
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-352dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+180dupT
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-352dupT
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu41PhefsTer53
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

11-47281000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47281000
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47281000
    reference: chr 11
allele count: 52
allele frequency: 2.761550716941051e-3
allele num: 18830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1792C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.132C>T
  hgvsp: ENST00000419652.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-342C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+190C>T
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8464C>T
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro44Pro
num of homozygotes: 1
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

11-47281001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47281001
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47281001
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 18656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-341G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-341G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-341G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-341G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.133G>A
  hgvsp: ENSP00000407716.1:p.Ala45Thr
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-341G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-341G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+191G>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-341G>A
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala45Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-47281014-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47281014
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47281014
    reference: chr 11
allele count: 1
allele frequency: 5.815982319413749e-5
allele num: 17194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.146C>A
  hgvsp: ENSP00000407716.1:p.Pro49Gln
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403798
  ensembl transcript: ENST00000436778
  gene symbol: NR1H3
  hgvsc: ENST00000436778.1:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.140+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8450C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000433271
  ensembl transcript: ENST00000481889
  gene symbol: NR1H3
  hgvsc: ENST00000481889.2:c.-92-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-328C>A
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+204C>A
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro49Gln
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-47281074-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47281074
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47281074
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 11360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000527464
  gene symbol: NR1H3
  hgvsc: ENST00000527464.1:n.283-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.*41A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000532630
  gene symbol: NR1H3
  hgvsc: ENST00000532630.1:n.74-8390A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.44-263A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000391005
  ensembl transcript: ENST00000444396
  gene symbol: NR1H3
  hgvsc: ENST00000444396.1:c.43+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000529540
  gene symbol: NR1H3
  hgvsc: ENST00000529540.1:n.231-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.141-263A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000473222
  gene symbol: NR1H3
  hgvsc: ENST00000473222.1:n.60A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+264A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000378793
  ensembl transcript: ENST00000395397
  gene symbol: NR1H3
  hgvsc: ENST00000395397.3:c.-92-268A>C
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1718A>C
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-47281074-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47281074
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47281074
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 11360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000473222
  gene symbol: NR1H3
  hgvsc: ENST00000473222.1:n.60A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000434650
  ensembl transcript: ENST00000531660
  gene symbol: NR1H3
  hgvsc: ENST00000531660.1:c.-92-268A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000412636
  ensembl transcript: ENST00000412937
  gene symbol: NR1H3
  hgvsc: ENST00000412937.1:c.-92-268A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000495866
  gene symbol: NR1H3
  hgvsc: ENST00000495866.1:n.283-268A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000406692
  ensembl transcript: ENST00000420369
  gene symbol: NR1H3
  hgvsc: ENST00000420369.1:c.44-263A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000525441
  gene symbol: NR1H3
  hgvsc: ENST00000525441.1:n.240+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000384745
  ensembl transcript: ENST00000405853
  gene symbol: NR1H3
  hgvsc: ENST00000405853.3:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000387946
  ensembl transcript: ENST00000441012
  gene symbol: NR1H3
  hgvsc: ENST00000441012.2:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000407716
  ensembl transcript: ENST00000419652
  gene symbol: NR1H3
  hgvsc: ENST00000419652.1:c.*41A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000413095
  ensembl transcript: ENST00000457932
  gene symbol: NR1H3
  hgvsc: ENST00000457932.1:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000481020
  gene symbol: NR1H3
  hgvsc: ENST00000481020.1:n.77-268A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000530310
  gene symbol: NR1H3
  hgvsc: ENST00000530310.1:n.141-263A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000403696
  ensembl transcript: ENST00000436029
  gene symbol: NR1H3
  hgvsc: ENST00000436029.1:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000396132
  ensembl transcript: ENST00000437276
  gene symbol: NR1H3
  hgvsc: ENST00000437276.1:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000498548
  gene symbol: NR1H3
  hgvsc: ENST00000498548.1:n.380+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000476086
  gene symbol: NR1H3
  hgvsc: ENST00000476086.2:n.130-268A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000420656
  ensembl transcript: ENST00000467728
  gene symbol: NR1H3
  hgvsc: ENST00000467728.1:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000415591
  ensembl transcript: ENST00000449369
  gene symbol: NR1H3
  hgvsc: ENST00000449369.1:c.43+264A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385073
  ensembl transcript: ENST00000405576
  gene symbol: NR1H3
  hgvsc: ENST00000405576.1:c.-92-268A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000487913
  gene symbol: NR1H3
  hgvsc: ENST00000487913.1:n.74-1718A>G
  variant of: http://identifiers.org/hgnc/7966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl transcript: ENST00000461778
  gene symbol: NR1H3
  hgvsc: ENST00000461778.1:n.372+264A>G
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

11-47281077-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47281077
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 47281076
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 11108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000025434
  ensembl protein: ENSP00000385801
  ensembl transcript: ENST00000407404
  gene symbol: NR1H3
  hgvsc: ENST00000407404.1:c.44-261delT
  variant of: http://identifiers.org/hgnc/7966
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
num of homozygotes: 0
reference allele: GT

GenotypeQuality
all individuals: 1364
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 4.68937e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.61e-2

QD
type: SiteQuality
SIO_000300: 1.837e1

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

QD
type: SiteQuality
SIO_000300: 5.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.48885e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 3706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.391e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.169999999999999e-2

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

DP
type: SiteQuality
SIO_000300: 4.27062e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.872659176029963e-3
allele num: 534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.682e0

FS
type: SiteQuality
SIO_000300: 1.808e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 4.16447e5

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.284356537374775e-4
allele num: 7786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.073e1

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.39e-2

DP
type: SiteQuality
SIO_000300: 3.99126e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 372
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.912621359223301e-3
allele num: 1030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.575e0

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

QD
type: SiteQuality
SIO_000300: 2.134e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 3.8571e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 1743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.895375284306293e-4
allele num: 5276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.289324394017535e-4
allele num: 7756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.72836e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.550000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.336e1

FS
type: SiteQuality
SIO_000300: 2.591e0

MQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.285e0

VQSLOD
type: SiteQuality
SIO_000300: -3.234e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeQuality
all individuals: 286
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.069e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 3.4058e5

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.021e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-625G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-625G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.-37-14G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.-37-14G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.279G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.-37-14G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.161-14G>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1033
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 23092
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5584
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2626
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10561
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 650
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 645
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13185
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8025
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32428
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

DP
type: SiteQuality
SIO_000300: 3.147464e6

VQSLOD
type: SiteQuality
SIO_000300: -2.135e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.455e0

QD
type: SiteQuality
SIO_000300: 1.092e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.161-13G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-624G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.288G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000387946
ensembl transcript: ENST00000441012
gene symbol: NR1H3
hgvsc: ENST00000441012.2:c.-37-13G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-624G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.-37-13G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-624G>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 2625
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 650
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 462
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13187
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10561
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 452
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 645
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23093
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1031
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5589
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15428
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8029
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

FS
type: SiteQuality
SIO_000300: 2.471e0

DP
type: SiteQuality
SIO_000300: 3.147448e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.242e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-618C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.-32-12C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-618C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.-37-7C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-618C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.61-7C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-618C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.161-7C>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 5606
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 649
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 393
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 452
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13213
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2618
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1029
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 641
bin: 9.25e1
variant carriers: 2

GenotypeDepth
all individuals: 10573
bin: 9.75e1
variant carriers: 113

GenotypeDepth
all individuals: 23101
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 324
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 325
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 530
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15426
bin: 9.75e1
variant carriers: 130

European (Non-Finnish)
type: Population
allele count: 112
allele frequency: 1.678556441460344e-3
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.045949214026602e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.695e0

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

DP
type: SiteQuality
SIO_000300: 3.149309e6

QD
type: SiteQuality
SIO_000300: 1.276e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 6.5e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.161-4G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-615G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-615G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8737G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-615G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000415591
ensembl transcript: ENST00000449369
gene symbol: NR1H3
hgvsc: ENST00000449369.1:c.-37-4G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.297G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.-41G>C
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5630
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2623
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13244
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23149
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 391
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 323
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1034
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10486
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15328
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.138543e6

VQSLOD
type: SiteQuality
SIO_000300: -2.678e0

QD
type: SiteQuality
SIO_000300: 2.79e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 1.013e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.-18C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-592C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-592C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8714C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-592C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.-18C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-592C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10484
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1037
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23178
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 391
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2629
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13258
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 459
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15335
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.618e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.538e0

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

QD
type: SiteQuality
SIO_000300: 2.426e1

DP
type: SiteQuality
SIO_000300: 3.139328e6

FS
type: SiteQuality
SIO_000300: 3.433e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-587G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-587G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-587G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-587G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.185G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-587G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-587G>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 325
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2628
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5628
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13260
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23180
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 391
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10483
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 458
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1037
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15335
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.139265e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: -5.375e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.279e0

FS
type: SiteQuality
SIO_000300: 4.236e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-2030G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.-6G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.192G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-580G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-580G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-580G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.324G>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 13003
bin: 3.25e1
variant carriers: 20

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2306
bin: 3.75e1
variant carriers: 21

GenotypeDepth
all individuals: 13545
bin: 9.75e1
variant carriers: 12966

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 287
bin: 8.75e1
variant carriers: 263

GenotypeDepth
all individuals: 249
bin: 7.75e1
variant carriers: 212

GenotypeDepth
all individuals: 213
bin: 6.25e1
variant carriers: 146

GenotypeDepth
all individuals: 5540
bin: 2.25e1
variant carriers: 6

GenotypeDepth
all individuals: 710
bin: 4.25e1
variant carriers: 37

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 5.25e1
variant carriers: 70

GenotypeDepth
all individuals: 195
bin: 5.75e1
variant carriers: 100

GenotypeDepth
all individuals: 23025
bin: 2.75e1
variant carriers: 13

GenotypeDepth
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 8.25e1
variant carriers: 250

GenotypeDepth
all individuals: 219
bin: 6.75e1
variant carriers: 168

GenotypeDepth
all individuals: 302
bin: 9.25e1
variant carriers: 268

GenotypeDepth
all individuals: 348
bin: 4.75e1
variant carriers: 45

GenotypeDepth
all individuals: 259
bin: 7.25e1
variant carriers: 203

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7960
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16036
bin: 9.75e1
variant carriers: 14784

Other
type: Population
allele count: 135
allele frequency: 1.486784140969163e-1
allele num: 908
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 1779
allele frequency: 2.689749017236165e-1
allele num: 6614
num of homozygotes: 237

African
type: Population
allele count: 273
allele frequency: 2.623486450124928e-2
allele num: 10406
num of homozygotes: 4

Latino
type: Population
allele count: 1408
allele frequency: 1.216099499049922e-1
allele num: 11578
num of homozygotes: 89

European (Non-Finnish)
type: Population
allele count: 9396
allele frequency: 1.407977942278299e-1
allele num: 66734
num of homozygotes: 697

East Asian
type: Population
allele count: 18
allele frequency: 2.079963022879593e-3
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 3178
allele frequency: 1.924660852713178e-1
allele num: 16512
num of homozygotes: 353

FS
type: SiteQuality
SIO_000300: 1.113e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

DP
type: SiteQuality
SIO_000300: 4.022612e6

QD
type: SiteQuality
SIO_000300: 1.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.20C>G
hgvsp: ENSP00000406692.1:p.Ala7Gly
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-555C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.117C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-555C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-555C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.20C>G
hgvsp: ENSP00000384745.3:p.Ala7Gly
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.20C>G
hgvsp: ENSP00000391005.1:p.Ala7Gly
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-555C>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 888
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30838
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3032
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 7430
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 17139
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 286
bin: 9.75e1
variant carriers: 13

GenotypeDepth
all individuals: 401
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10666
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 803
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.84214603912454e-4
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.040437823046519e-4
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011421701232342e-5
allele num: 66540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.846e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 1.70367e2

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.802432e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.305e0

VQSLOD
type: SiteQuality
SIO_000300: -1.434e2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-554C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-554C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-554C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.358C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-2004C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.21C>G
hgvsp: ENST00000436778.1:c.21C>G(p.%3D)
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-554C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-554C>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31048
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7484
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3068
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 890
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.59e0

MQRankSum
type: SiteQuality
SIO_000300: 6.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 1.763072e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.24T>C
hgvsp: ENST00000405853.3:c.24T>C(p.%3D)
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.121T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8673T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: synonymous_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.24T>C
hgvsp: ENST00000467728.1:c.24T>C(p.%3D)
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-551T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.24T>C
hgvsp: ENST00000457932.1:c.24T>C(p.%3D)
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.24T>C
hgvsp: ENST00000420369.1:c.24T>C(p.%3D)
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-551T>C
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 7487
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 890
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31050
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3066
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.898e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.44836e2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.381e0

MQ
type: SiteQuality
SIO_000300: 5.761e1

MQRankSum
type: SiteQuality
SIO_000300: -2.329e0

QD
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 1.762885e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.539e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.366C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.374C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-538C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-538C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-538C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-538C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-538C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-538C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 890
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 9.75e1
variant carriers: 7

GenotypeDepth
all individuals: 31054
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3066
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7490
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048846269103986e-4
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.209e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.212e0

DP
type: SiteQuality
SIO_000300: 1.762933e6

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+15A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.372+15A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+15A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-517A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-517A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1967A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+15A>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3067
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7486
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31056
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

FS
type: SiteQuality
SIO_000300: 1.673e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.43e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.444e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

DP
type: SiteQuality
SIO_000300: 1.761689e6

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+17C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+17C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-515C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000415591
ensembl transcript: ENST00000449369
gene symbol: NR1H3
hgvsc: ENST00000449369.1:c.43+17C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-515C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+17C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+17C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 17271
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3067
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7482
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 31060
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: -7.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.305e1

DP
type: SiteQuality
SIO_000300: 1.761537e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8634T>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+20T>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+20T>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-512T>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+20T>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-512T>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-512T>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7481
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 31064
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3067
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 769
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43810
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.761299e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.918e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.156e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 6.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.71e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-507C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+25C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-507C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+25C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.43+25C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+25C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-507C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 17271
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 890
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7486
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31058
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3068
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43808
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 1.761002e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 1.258e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-502G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.140+30G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8624G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+30G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+30G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+30G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+30G>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17268
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31058
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 52
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 7486
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3064
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 889
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494678778067572e-5
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 6.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.81e0

DP
type: SiteQuality
SIO_000300: 1.760547e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+33C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+33C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+33C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.43+33C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8621C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-499C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-499C>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 7486
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17265
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31057
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3065
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 889
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10737
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

FS
type: SiteQuality
SIO_000300: 1.361e0

MQRankSum
type: SiteQuality
SIO_000300: -5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.249e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: -1.261e0

DP
type: SiteQuality
SIO_000300: 1.760088e6

QD
type: SiteQuality
SIO_000300: 1.813e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-497G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+35G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+35G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-497G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-497G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-497G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+35G>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31055
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7487
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 887
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3062
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17265
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10734
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.737e0

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 1.759855e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.743e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+38C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1944C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+38C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.43+38C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-494C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-494C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-494C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 388
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 888
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31049
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7490
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17260
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3063
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.997181324777355e-5
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.759502e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.95e-1

QD
type: SiteQuality
SIO_000300: 1.457e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+39G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-493G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.43+39G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+39G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+39G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-493G>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+39G>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 31053
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 883
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7492
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17261
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3059
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.557e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 2.134e0

DP
type: SiteQuality
SIO_000300: 1.758882e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31009
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7521
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17191
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 877
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3028
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.799e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.755212e6

QD
type: SiteQuality
SIO_000300: 4.21e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+49C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.372+49C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-483C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-483C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+49C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-483C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-483C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 877
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7521
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17191
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31009
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 380
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3028
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.755212e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+50G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+50G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+50G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+50G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-482G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-482G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1932G>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 8

GenotypeDepth
all individuals: 156
bin: 5.25e1
variant carriers: 6

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7523
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 9

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 6

GenotypeDepth
all individuals: 48
bin: 6.75e1
variant carriers: 9

GenotypeDepth
all individuals: 30999
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3026
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 7

GenotypeDepth
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17167
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 5.75e1
variant carriers: 5

GenotypeDepth
all individuals: 22
bin: 7.75e1
variant carriers: 6

GenotypeDepth
all individuals: 54
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 869
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 373
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 42
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 678
bin: 9.75e1
variant carriers: 100

GenotypeQuality
all individuals: 754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10687
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 8.46642293630941e-3
allele num: 10394
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.509085994052803e-5
allele num: 66586
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.921612735767433e-4
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.753978e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.208e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+51C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-481C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-481C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000415591
ensembl transcript: ENST00000449369
gene symbol: NR1H3
hgvsc: ENST00000449369.1:c.43+51C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-481C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+51C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.43+51C>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 39
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 17188
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31053
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3026
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7531
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.126e0

DP
type: SiteQuality
SIO_000300: 1.74856e6

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.458e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-481C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.43+51C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+51C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.43+51C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-481C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+51C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-481C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7531
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 17188
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 31053
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 3026
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 371
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 6.25e1
variant carriers: 5

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 871
bin: 4.25e1
variant carriers: 5

GenotypeDepth
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 6.75e1
variant carriers: 6

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 16
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 151
bin: 5.25e1
variant carriers: 4

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.060356320446007e-3
allele num: 16502
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00390507659958e-5
allele num: 66580
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.458e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.126e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.74856e6

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+56T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-476T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+56T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-476T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+56T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-476T>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+56T>C
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 7535
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31007
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3003
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 853
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17127
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.054e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

FS
type: SiteQuality
SIO_000300: 5.629e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.743531e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.55e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+56T>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8598T>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+56T>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+56T>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1926T>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+56T>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.44-46T>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3003
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17127
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 853
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31007
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7535
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10682
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.054e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 5.629e0

DP
type: SiteQuality
SIO_000300: 1.743531e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 7.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-463C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+69C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+69C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000407716
ensembl transcript: ENST00000419652
gene symbol: NR1H3
hgvsc: ENST00000419652.1:c.44-33C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-463C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-463C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+69C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30517
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 223
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 761
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 314
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 7581
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 649
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16560
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 900
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2833
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10346
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216841080554879e-4
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516944267467613e-5
allele num: 65922
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.713811e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.153e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1891C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+91C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-441C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-441C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-441C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+91C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.372+91C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1424
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12036
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 26
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1867
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 482
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7759
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4541
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25616
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6162
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7968
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635911529904463e-5
allele num: 61128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

DP
type: SiteQuality
SIO_000300: 1.495713e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

FS
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+99C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8555C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-433C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+99C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+99C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+99C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1883C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7176
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7879
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20702
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 720
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10376
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9222
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2274
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1486
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.540073633531577e-5
allele num: 56496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.147e1

FS
type: SiteQuality
SIO_000300: 3.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.16e-1

DP
type: SiteQuality
SIO_000300: 1.331192e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.031e0

MQRankSum
type: SiteQuality
SIO_000300: -1.225e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-428A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-428A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+104A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+104A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000387946
ensembl transcript: ENST00000441012
gene symbol: NR1H3
hgvsc: ENST00000441012.2:c.43+104A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+104A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+104A>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13815
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1088
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6519
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2906
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6840
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1220
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10794
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16687
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21669
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.888001102080176e-5
allele num: 14518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.185e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 1.544e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

VQSLOD
type: SiteQuality
SIO_000300: -2.226e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 4.06e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+105G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+105G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1877G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-427G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+105G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+105G>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+105G>C
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10840
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2869
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1078
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13851
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6940
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16636
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1222
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6441
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22855
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22141
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.916736947021391e-5
allele num: 52172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.501e0

DP
type: SiteQuality
SIO_000300: 1.182641e6

VQSLOD
type: SiteQuality
SIO_000300: -8.963e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.17e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.43+107A>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1875A>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-425A>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+107A>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-425A>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+107A>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+107A>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 6711
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2918
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15487
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11683
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1442
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5881
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14747
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1019
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.924954863019075e-5
allele num: 50956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 1.144309e6

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+111C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+111C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+111C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000415591
ensembl transcript: ENST00000449369
gene symbol: NR1H3
hgvsc: ENST00000449369.1:c.43+111C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.372+111C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+111C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-421C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5994
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 974
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16129
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5243
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1874
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 343
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 13099
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3028
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.131650263871059e-5
allele num: 14022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48662
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

FS
type: SiteQuality
SIO_000300: 1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.082569e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1868_74-1867delAG
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.43+114_43+115delAG
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+114_43+115delAG
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-418_-92-417delAG
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+114_43+115delAG
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+114_43+115delAG
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-418_-92-417delAG
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 1874
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16129
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 13099
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5994
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5243
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 974
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 343
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3028
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13538
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.323451561672843e-4
allele num: 7556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14022
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.082569e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.101e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.98e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9413
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3880
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18554
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3679
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3111
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 838
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16352
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3981
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 314
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31847
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13539
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.345105764269968e-5
allele num: 42642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13180
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQRankSum
type: SiteQuality
SIO_000300: -2.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 9.34318e5

MQ
type: SiteQuality
SIO_000300: 4.872e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+127C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-405C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+127C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-405C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-405C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+127C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1855C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2933
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2728
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 18362
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 708
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18435
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3115
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7001
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6353
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7055
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.724201808870001e-5
allele num: 36708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.71e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 3.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 8.25468e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-404G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+128G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+128G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.372+128G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-404G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+128G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-404G>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2585
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 6701
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2833
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2964
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 313
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18251
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 18722
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6854
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7557
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1874
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3322
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.068348250610252e-4
allele num: 4916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.595344673231871e-5
allele num: 35744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.85e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.09637e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+130_43+131insGA
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+130_43+131insGA
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000415591
ensembl transcript: ENST00000449369
gene symbol: NR1H3
hgvsc: ENST00000449369.1:c.43+130_43+131insGA
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-402_-92-401insGA
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+130_380+131insGA
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-402_-92-401insGA
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+130_43+131insGA
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19089
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2672
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2458
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7805
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 673
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17858
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6238
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2742
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 604
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8586
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.923805625402023e-5
allele num: 34202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.83885e5

MQ
type: SiteQuality
SIO_000300: 4.294e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.346e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

MQRankSum
type: SiteQuality
SIO_000300: -2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 2.818e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-401C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-401C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+131C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+131C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+131C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-401C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-401C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8908
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5803
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2508
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19416
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2336
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2603
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17260
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8280
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.073896471166851e-5
allele num: 32532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11716
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

QD
type: SiteQuality
SIO_000300: 3.101e1

MQRankSum
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.41e1

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

DP
type: SiteQuality
SIO_000300: 7.5773e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+140C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-392C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000434650
ensembl transcript: ENST00000531660
gene symbol: NR1H3
hgvsc: ENST00000531660.1:c.-92-392C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-392C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+140C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.140+140C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000476086
gene symbol: NR1H3
hgvsc: ENST00000476086.2:n.130-392C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 1507
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 529
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4867
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2124
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14137
bin: 2.5e0
variant carriers: 3

GenotypeDepth
all individuals: 20423
bin: 7.5e0
variant carriers: 5

GenotypeDepth
all individuals: 13091
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2236
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 26468
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1656
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15037
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24672
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 3.560126582278481e-3
allele num: 2528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.626e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.17e-2

FS
type: SiteQuality
SIO_000300: 1.5723e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.62202e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.5e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+141G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-391G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+141G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+141G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000406692
ensembl transcript: ENST00000420369
gene symbol: NR1H3
hgvsc: ENST00000420369.1:c.43+141G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000495866
gene symbol: NR1H3
hgvsc: ENST00000495866.1:n.283-391G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8513G>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 7
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1346
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2184
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14806
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12543
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20555
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 524
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2102
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25820
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 410
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15710
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.284490145672665e-4
allele num: 2334
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.50861e5

FS
type: SiteQuality
SIO_000300: 3.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

MQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.709e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.299e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.91e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-374C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.140+158C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-374C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-374C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+158C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+158C>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1824C>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 6
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1799
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 553
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1844
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24053
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4106
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17133
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7105
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18173
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 2.988643156007172e-4
allele num: 3346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15124
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

DP
type: SiteQuality
SIO_000300: 5.27897e5

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.03e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+180dupT
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+180dupT
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000530310
gene symbol: NR1H3
hgvsc: ENST00000530310.1:n.140+180dupT
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+180dupT
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-352dupT
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000384745
ensembl transcript: ENST00000405853
gene symbol: NR1H3
hgvsc: ENST00000405853.3:c.43+180dupT
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+180dupT
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1691
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1463
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3040
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10497
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 80
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30550
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3666
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 30215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.365184484389782e-4
allele num: 8456
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.14073e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.044e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000498548
gene symbol: NR1H3
hgvsc: ENST00000498548.1:n.380+190C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+190C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+190C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000415591
ensembl transcript: ENST00000449369
gene symbol: NR1H3
hgvsc: ENST00000449369.1:c.43+190C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+190C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-342C>T
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385073
ensembl transcript: ENST00000405576
gene symbol: NR1H3
hgvsc: ENST00000405576.1:c.-92-342C>T
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1604
bin: 2.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1804
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 7616
bin: 7.5e0
variant carriers: 19

GenotypeDepth
all individuals: 32199
bin: 2.5e0
variant carriers: 7

GenotypeDepth
all individuals: 1518
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 190
bin: 4.25e1
variant carriers: 6

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 1.75e1
variant carriers: 6

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 4

GenotypeDepth
all individuals: 17
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3590
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 42
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 345
bin: 3.75e1
variant carriers: 6

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.75e1
variant carriers: 9

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1115
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2327
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1029
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 31129
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6019
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4887
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 6.270378730875345e-3
allele num: 7974
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.321702352630188e-4
allele num: 7566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.388888888888889e-3
allele num: 720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

FS
type: SiteQuality
SIO_000300: 2.921e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

DP
type: SiteQuality
SIO_000300: 3.72803e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-341G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-341G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000412636
ensembl transcript: ENST00000412937
gene symbol: NR1H3
hgvsc: ENST00000412937.1:c.-92-341G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8463G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+191G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+191G>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1791G>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 7420
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1493
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1795
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32283
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3583
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1608
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6055
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

VQSLOD
type: SiteQuality
SIO_000300: -8.941e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.46e-2

DP
type: SiteQuality
SIO_000300: 3.689e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-328C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-328C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000420656
ensembl transcript: ENST00000467728
gene symbol: NR1H3
hgvsc: ENST00000467728.1:c.43+204C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000487913
gene symbol: NR1H3
hgvsc: ENST00000487913.1:n.74-1778C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+204C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000396132
ensembl transcript: ENST00000437276
gene symbol: NR1H3
hgvsc: ENST00000437276.1:c.43+204C>A
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+204C>A
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31466
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1212
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5694
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1564
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1741
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3293
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.329787234042553e-4
allele num: 7520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

VQSLOD
type: SiteQuality
SIO_000300: -2.57e-2

DP
type: SiteQuality
SIO_000300: 3.32519e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.74e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.826e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

QD
type: SiteQuality
SIO_000300: 1.708e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000481020
gene symbol: NR1H3
hgvsc: ENST00000481020.1:n.77-268A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000413095
ensembl transcript: ENST00000457932
gene symbol: NR1H3
hgvsc: ENST00000457932.1:c.43+264A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+264A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403696
ensembl transcript: ENST00000436029
gene symbol: NR1H3
hgvsc: ENST00000436029.1:c.43+264A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000461778
gene symbol: NR1H3
hgvsc: ENST00000461778.1:n.372+264A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-268A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+264A>C
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000525441
gene symbol: NR1H3
hgvsc: ENST00000525441.1:n.240+264A>C
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1179
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2902
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4565
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 473
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25412
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18847
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6983
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.63e-2

QD
type: SiteQuality
SIO_000300: 1.138e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.96946e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000433271
ensembl transcript: ENST00000481889
gene symbol: NR1H3
hgvsc: ENST00000481889.2:c.-92-268A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000378793
ensembl transcript: ENST00000395397
gene symbol: NR1H3
hgvsc: ENST00000395397.3:c.-92-268A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000532630
gene symbol: NR1H3
hgvsc: ENST00000532630.1:n.74-8390A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000527464
gene symbol: NR1H3
hgvsc: ENST00000527464.1:n.283-268A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl transcript: ENST00000529540
gene symbol: NR1H3
hgvsc: ENST00000529540.1:n.231-268A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000403798
ensembl transcript: ENST00000436778
gene symbol: NR1H3
hgvsc: ENST00000436778.1:c.43+264A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000385801
ensembl transcript: ENST00000407404
gene symbol: NR1H3
hgvsc: ENST00000407404.1:c.43+264A>G
variant of: http://identifiers.org/hgnc/7966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000025434
ensembl protein: ENSP00000391005
ensembl transcript: ENST00000444396
gene symbol: NR1H3
hgvsc: ENST00000444396.1:c.43+264A>G
variant of: http://identifiers.org/hgnc/7966

GenotypeDepth
all individuals: 4565
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25412
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 473
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2902
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1179
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6983
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18847
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.63e-2

QD
type: SiteQuality
SIO_000300: 1.138e1

DP
type: SiteQuality
SIO_000300: 1.96946e5

MQ
type: SiteQuality
SIO_000300: 6.0e1