15-36936544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36936544
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36936544
    reference: chr 15
allele count: 4
allele frequency: 3.327454829800686e-5
allele num: 120212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-148+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.147+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-2383C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.370+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.147+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-880G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-148+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-9755G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-148+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.147+20G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.374+20G>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

15-36936550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36936550
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36936550
    reference: chr 15
allele count: 4
allele frequency: 3.327787021630615e-5
allele num: 120200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.147+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.370+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-874G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-148+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-9749G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.147+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.147+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-2389C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-148+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-148+26G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.374+26G>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11360
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

15-36936555-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36936555
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36936555
    reference: chr 15
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-148+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-148+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.370+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.374+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.147+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-869C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-9744C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-148+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-2394G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.147+31C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.147+31C>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11329
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

15-36936566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36936566
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36936566
    reference: chr 15
allele count: 3
allele frequency: 2.49708673214583e-5
allele num: 120140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.370+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-148+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-2405A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.147+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.147+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-148+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-9733T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.147+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.374+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-148+42T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-858T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24016
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-36937376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937376
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937376
    reference: chr 15
allele count: 1
allele frequency: 5.114566284779051e-5
allele num: 19552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8923C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3215G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-48C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-48C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9599
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

15-36937391-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937391
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937390
    reference: chr 15
allele count: 1
allele frequency: 5.082333807684488e-5
allele num: 19676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8907delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3231delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-32delA
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-32delA
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: GA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-36937396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937396
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937396
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 19724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8903T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3235A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-28T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-28T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26586
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

15-36937397-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937397
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 19730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3236A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8902T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-27T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-27T>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26793
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

15-36937403-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937403
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937403
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 19794
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3242A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-21T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8896T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27331
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

15-36937405-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937405
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937405
    reference: chr 15
allele count: 19839
allele frequency: 9.55451743402042e-1
allele num: 20764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3244C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-19G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8894G>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 1223
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.25e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 14414
  bin: 2.5e0
  variant carriers: 13215
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 1243
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 1021
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.75e1
  variant carriers: 649
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 7.5e0
  variant carriers: 6465
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 487
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 9.75e1
  variant carriers: 1002
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 673
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 912
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 4.75e1
  variant carriers: 1103
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.25e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 71
num of homozygotes: 9488
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

15-36937408-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937408
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937409
    reference: chr 15
allele count: 2
allele frequency: 9.873617693522907e-5
allele num: 20256
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3248dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8883dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371-8dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147-8dupT
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23970
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-36937424-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937424
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937424
    reference: chr 15
allele count: 1
allele frequency: 4.897639337839162e-5
allele num: 20418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-147A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.148A>G
  hgvsp: ENSP00000455397.1:p.Lys50Glu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.371A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3263T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-147A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-147A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.148A>G
  hgvsp: ENSP00000401362.2:p.Lys50Glu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.148A>G
  hgvsp: ENSP00000456477.1:p.Lys50Glu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8875A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-147A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.375A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys50Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

15-36937428-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937428
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937428
    reference: chr 15
allele count: 1
allele frequency: 4.893804443574435e-5
allele num: 20434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.152A>G
  hgvsp: ENSP00000401362.2:p.His51Arg
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.152A>G
  hgvsp: ENSP00000455397.1:p.His51Arg
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.379A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8871A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3267T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.375A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-143A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.152A>G
  hgvsp: ENSP00000456477.1:p.His51Arg
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His51Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

15-36937450-ACAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937450
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937447
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 20596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-117_-115delCAT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.178_180delCAT
  hgvsp: ENSP00000456477.1:p.His60del
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3292_122-3290delATG
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-117_-115delCAT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.405_407delCAT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-117_-115delCAT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.178_180delCAT
  hgvsp: ENSP00000455397.1:p.His60del
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8845_102-8843delCAT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.401_403delCAT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.178_180delCAT
  hgvsp: ENSP00000401362.2:p.His60del
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-117_-115delCAT
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: inframe deletion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31927
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30474
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His60del
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: ACAT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

15-36937456-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937456
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937456
    reference: chr 15
allele count: 4
allele frequency: 1.938923897237033e-4
allele num: 20630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.180T>C
  hgvsp: ENST00000569302.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.180T>C
  hgvsp: ENST00000437989.2:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.407T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.403T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-115T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-115T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3295A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8843T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-115T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.180T>C
  hgvsp: ENST00000566621.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-115T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30347
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His60His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-36937461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937461
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937461
    reference: chr 15
allele count: 48
allele frequency: 2.320858717725559e-3
allele num: 20682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-110C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.185C>T
  hgvsp: ENSP00000455397.1:p.Ser62Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.185C>T
  hgvsp: ENSP00000401362.2:p.Ser62Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8838C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.185C>T
  hgvsp: ENSP00000456477.1:p.Ser62Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-110C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3300G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.408C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-110C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-110C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.412C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 31667
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 7
hgvs: p.Ser62Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-36937462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937462
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937462
    reference: chr 15
allele count: 4
allele frequency: 1.935171746492501e-4
allele num: 20670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.413G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-109G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.409G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3301C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.186G>A
  hgvsp: ENST00000569302.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8837G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.186G>A
  hgvsp: ENST00000566621.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-109G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.186G>A
  hgvsp: ENST00000437989.2:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ser62Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-36937470-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937470
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937470
    reference: chr 15
allele count: 1
allele frequency: 4.841677156967173e-5
allele num: 20654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-101T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.194T>C
  hgvsp: ENSP00000401362.2:p.Ile65Thr
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.194T>C
  hgvsp: ENSP00000456477.1:p.Ile65Thr
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.417T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3309A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.421T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.194T>C
  hgvsp: ENSP00000455397.1:p.Ile65Thr
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-101T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-101T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-101T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8829T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile65Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-36937473-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937473
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937473
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 20666
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.197A>C
  hgvsp: ENSP00000455397.1:p.Glu66Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.424A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.197A>C
  hgvsp: ENSP00000401362.2:p.Glu66Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-98A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.420A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8826A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.197A>C
  hgvsp: ENSP00000456477.1:p.Glu66Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3312T>G
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu66Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

15-36937473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937473
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937473
    reference: chr 15
allele count: 1
allele frequency: 4.838865769863544e-5
allele num: 20666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.424A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.197A>G
  hgvsp: ENSP00000401362.2:p.Glu66Gly
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-98A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.197A>G
  hgvsp: ENSP00000455397.1:p.Glu66Gly
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3312T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-98A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-98A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.197A>G
  hgvsp: ENSP00000456477.1:p.Glu66Gly
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.420A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8826A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-98A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu66Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

15-36937485-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937485
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937485
    reference: chr 15
allele count: 1
allele frequency: 4.861921431349669e-5
allele num: 20568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.432A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.209A>G
  hgvsp: ENSP00000456477.1:p.Gln70Arg
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.209A>G
  hgvsp: ENSP00000401362.2:p.Gln70Arg
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3324T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.436A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.209A>G
  hgvsp: ENSP00000455397.1:p.Gln70Arg
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8814A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-86A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln70Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum

15-36937504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937504
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937504
    reference: chr 15
allele count: 1
allele frequency: 4.925623091321052e-5
allele num: 20302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.439+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-83+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.435+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.212+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8795C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3343G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-83+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.212+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-83+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.212+16C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-83+16C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-36937509-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937509
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937509
    reference: chr 15
allele count: 38
allele frequency: 1.883612570635471e-3
allele num: 20174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8790T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-83+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.212+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.212+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-83+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-83+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3348A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.212+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.439+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.435+21T>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-83+21T>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29803
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 9.75e1
  variant carriers: 39
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-36937517-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937517
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937517
    reference: chr 15
allele count: 1
allele frequency: 4.995004995004995e-5
allele num: 20020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-83+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3356T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-83+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.212+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.212+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.435+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.212+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-83+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8782A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-83+29A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.439+29A>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

15-36937517-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937517
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937517
    reference: chr 15
allele count: 1
allele frequency: 4.995004995004995e-5
allele num: 20020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-83+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8782A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.212+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-83+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-83+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.435+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.212+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.212+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3356T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-83+29A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.439+29A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27714
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-36937536-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36937536
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36937536
    reference: chr 15
allele count: 4
allele frequency: 2.041232904674423e-4
allele num: 19596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-83+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-3375C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000567573
  gene symbol: C15orf41
  hgvsc: ENST00000567573.1:n.435+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-8763G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.439+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-83+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.212+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.212+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-83+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.212+48G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-83+48G>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-36946268-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946268
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946268
    reference: chr 15
allele count: 1
allele frequency: 3.55088417015837e-5
allele num: 28162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12107G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.213-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.213-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.440-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-82-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-82-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-82-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-82-31C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.213-31C>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-36946269-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946269
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946269
    reference: chr 15
allele count: 1
allele frequency: 3.537068477645727e-5
allele num: 28272
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12108A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-82-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.213-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.213-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.213-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-82-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-82-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-82-30T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.440-30T>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-36946272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946272
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946272
    reference: chr 15
allele count: 3
allele frequency: 1.049538203190596e-4
allele num: 28584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-82-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.213-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12111T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-82-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.213-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-82-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.440-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.213-27A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-82-27A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23608
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-36946295-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946295
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946295
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 31410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.213-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.213-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12134G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.440-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-82-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-82-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.213-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-82-4C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-82-4C>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
hgvs: c.213-4C>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-36946295-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946295
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946295
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 31410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.440-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.213-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12134G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-82-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.213-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-82-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-82-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.213-4C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-82-4C>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29895
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
hgvs: c.213-4C>G
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-36946298-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946298
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946298
    reference: chr 15
allele count: 2
allele frequency: 6.260564702936204e-5
allele num: 31946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.213-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.440-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.213-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.102-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12137C>A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-82-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-82-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-82-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.213-1G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-82-1G>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 6.75e1
  variant carriers: 0
hgvs: c.213-1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

15-36946300-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946300
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 32436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-81T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-81T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-81T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.103T>G
  hgvsp: ENSP00000457227.1:p.Tyr35Asp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.214T>G
  hgvsp: ENSP00000455397.1:p.Tyr72Asp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.214T>G
  hgvsp: ENSP00000456477.1:p.Tyr72Asp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.441T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.214T>G
  hgvsp: ENSP00000401362.2:p.Tyr72Asp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12139A>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-81T>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12657
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr72Asp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

15-36946303-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946303
    reference: chr 15
allele count: 27780
allele frequency: 5.351570025043344e-1
allele num: 51910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.217C>G
  hgvsp: ENSP00000456477.1:p.Leu73Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12142G>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-78C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-78C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.217C>G
  hgvsp: ENSP00000455397.1:p.Leu73Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-78C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-78C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.217C>G
  hgvsp: ENSP00000401362.2:p.Leu73Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.444C>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.106C>G
  hgvsp: ENSP00000457227.1:p.Leu36Val
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 1.25e1
  variant carriers: 9102
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 3301
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 2.25e1
  variant carriers: 1036
genotype depth: GenotypeDepth
  all individuals: 24596
  bin: 7.5e0
  variant carriers: 11465
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 2.75e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 2.5e0
  variant carriers: 1984
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 9.75e1
  variant carriers: 2704
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 561
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 3.75e1
  variant carriers: 937
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.75e1
  variant carriers: 675
genotype quality: GenotypeQuality
  all individuals: 6377
  bin: 2.5e0
  variant carriers: 82
hgvs: p.Leu73Val
num of homozygotes: 6334
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-36946312-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946312
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946313
    reference: chr 15
allele count: 1
allele frequency: 2.498001598721023e-5
allele num: 40032
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-68dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-68dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.227dupT
  hgvsp: ENSP00000401362.2:p.Val77GlyfsTer15
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-68dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.116dupT
  hgvsp: ENSP00000457227.1:p.Val40GlyfsTer15
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.227dupT
  hgvsp: ENSP00000455397.1:p.Val77GlyfsTer15
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.227dupT
  hgvsp: ENSP00000456477.1:p.Val77GlyfsTer15
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12152dupA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-68dupT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.454dupT
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val77GlyfsTer15
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

15-36946316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946316
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946316
    reference: chr 15
allele count: 1
allele frequency: 2.535368389026926e-5
allele num: 39442
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12155A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.230T>C
  hgvsp: ENSP00000401362.2:p.Val77Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.230T>C
  hgvsp: ENSP00000455397.1:p.Val77Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.119T>C
  hgvsp: ENSP00000457227.1:p.Val40Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.230T>C
  hgvsp: ENSP00000456477.1:p.Val77Ala
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.457T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-65T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28378
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val77Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

15-36946334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946334
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946334
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 36930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.248C>T
  hgvsp: ENSP00000401362.2:p.Pro83Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-47C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.248C>T
  hgvsp: ENSP00000455397.1:p.Pro83Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.475C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.248C>T
  hgvsp: ENSP00000456477.1:p.Pro83Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.137C>T
  hgvsp: ENSP00000457227.1:p.Pro46Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12173G>A
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26227
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro83Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-36946343-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946343
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946343
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 35396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.257T>C
  hgvsp: ENSP00000401362.2:p.Leu86Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12182A>G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.146T>C
  hgvsp: ENSP00000457227.1:p.Leu49Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.257T>C
  hgvsp: ENSP00000456477.1:p.Leu86Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.484T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.257T>C
  hgvsp: ENSP00000455397.1:p.Leu86Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-38T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24022
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25273
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Leu86Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-36946368-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946368
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946368
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 27232
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.273+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.273+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.273+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12207T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-22+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.500+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-22+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-22+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-22+9A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.162+9A>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14784
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

15-36946370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946370
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946370
    reference: chr 15
allele count: 1
allele frequency: 3.708923670350864e-5
allele num: 26962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-22+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12209A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-22+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.273+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.273+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.500+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.162+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-22+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-22+11T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.273+11T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

15-36946394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36946394
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36946394
    reference: chr 15
allele count: 58
allele frequency: 2.632534495279593e-3
allele num: 22032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.122-12233C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-22+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.500+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-22+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.273+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.273+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.273+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-22+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.162+35G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-22+35G>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32875
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

15-36949990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36949990
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36949990
    reference: chr 15
allele count: 3
allele frequency: 6.206040546131568e-5
allele num: 48340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11188G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-44C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-44C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27104
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11746
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6013
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

15-36949991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36949991
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36949991
    reference: chr 15
allele count: 1
allele frequency: 2.059477716451108e-5
allele num: 48556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11187C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-43G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-43G>A
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27230
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

15-36950001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950001
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950001
    reference: chr 15
allele count: 1
allele frequency: 1.956028479774665e-5
allele num: 51124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11177T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-33A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-33A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

15-36950007-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950007
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950007
    reference: chr 15
allele count: 1
allele frequency: 1.882459244757351e-5
allele num: 53122
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11171A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-27T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-27T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28181
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-36950017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950017
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950017
    reference: chr 15
allele count: 2
allele frequency: 3.42301636201821e-5
allele num: 58428
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11161T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-17A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-17A>G
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

15-36950030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950030
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950030
    reference: chr 15
allele count: 1
allele frequency: 1.35984117055128e-5
allele num: 73538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-4A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11148T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
hgvs: c.274-4A>G
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

15-36950032-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950032
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950032
    reference: chr 15
allele count: 5
allele frequency: 6.457111863005915e-5
allele num: 77434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.274-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-21-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.163-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.501-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-21-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.274-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.274-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11146T>A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-21-2A>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-21-2A>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
hgvs: c.274-2A>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-36950037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950037
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950037
    reference: chr 15
allele count: 1
allele frequency: 1.191696260457135e-5
allele num: 83914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.277G>A
  hgvsp: ENSP00000456477.1:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-18G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.504G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.166G>A
  hgvsp: ENSP00000457227.1:p.Asp56Asn
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.277G>A
  hgvsp: ENSP00000401362.2:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.277G>A
  hgvsp: ENSP00000455397.1:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11141C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp93Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/15-36950041-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950041
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950041
    reference: chr 15
allele count: 1
allele frequency: 1.142595978062157e-5
allele num: 87520
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.281A>C
  hgvsp: ENSP00000401362.2:p.Tyr94Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11137T>G
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.170A>C
  hgvsp: ENSP00000457227.1:p.Tyr57Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.281A>C
  hgvsp: ENSP00000456477.1:p.Tyr94Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.281A>C
  hgvsp: ENSP00000455397.1:p.Tyr94Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.508A>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-14A>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr94Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

15-36950044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950044
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950044
    reference: chr 15
allele count: 13
allele frequency: 1.454041115808782e-4
allele num: 89406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.173C>T
  hgvsp: ENSP00000457227.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.284C>T
  hgvsp: ENSP00000455397.1:p.Ala95Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11134G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.284C>T
  hgvsp: ENSP00000401362.2:p.Ala95Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.284C>T
  hgvsp: ENSP00000456477.1:p.Ala95Val
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.511C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-11C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29454
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15483
  bin: 2.25e1
  variant carriers: 3
hgvs: p.Ala95Val
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-36950045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950045
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950045
    reference: chr 15
allele count: 3
allele frequency: 3.277399056109072e-5
allele num: 91536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.512G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.-10G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.285G>A
  hgvsp: ENST00000569302.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.174G>A
  hgvsp: ENST00000564586.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.285G>A
  hgvsp: ENST00000437989.2:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11133C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.285G>A
  hgvsp: ENST00000566621.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala95Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

15-36950058-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950058
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950058
    reference: chr 15
allele count: 9
allele frequency: 9.423689060144078e-5
allele num: 95504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.298G>T
  hgvsp: ENSP00000456477.1:p.Ala100Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.525G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.4G>T
  hgvsp: ENSP00000456736.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.298G>T
  hgvsp: ENSP00000401362.2:p.Ala100Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.4G>T
  hgvsp: ENSP00000342433.4:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11120C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.4G>T
  hgvsp: ENSP00000457854.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.298G>T
  hgvsp: ENSP00000455397.1:p.Ala100Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.4G>T
  hgvsp: ENSP00000454831.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.187G>T
  hgvsp: ENSP00000457227.1:p.Ala63Ser
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12083
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28142
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala100Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-36950060-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950060
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950060
    reference: chr 15
allele count: 1
allele frequency: 1.044975756562448e-5
allele num: 95696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.300T>G
  hgvsp: ENST00000569302.1:c.300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.6T>G
  hgvsp: ENST00000338183.4:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.300T>G
  hgvsp: ENST00000437989.2:c.300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.6T>G
  hgvsp: ENST00000566807.1:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.527T>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.300T>G
  hgvsp: ENST00000566621.1:c.300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.6T>G
  hgvsp: ENST00000567389.1:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11118A>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.6T>G
  hgvsp: ENST00000562877.1:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.189T>G
  hgvsp: ENST00000564586.1:c.189T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14152
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala100Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

15-36950061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950061
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950061
    reference: chr 15
allele count: 2
allele frequency: 2.090257310674944e-5
allele num: 95682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.7C>T
  hgvsp: ENSP00000454831.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.301C>T
  hgvsp: ENSP00000456477.1:p.Arg101Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.301C>T
  hgvsp: ENSP00000455397.1:p.Arg101Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.7C>T
  hgvsp: ENSP00000456736.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.190C>T
  hgvsp: ENSP00000457227.1:p.Arg64Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.7C>T
  hgvsp: ENSP00000342433.4:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.7C>T
  hgvsp: ENSP00000457854.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.301C>T
  hgvsp: ENSP00000401362.2:p.Arg101Trp
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11117G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.528C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29863
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg101Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-36950062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950062
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950062
    reference: chr 15
allele count: 2
allele frequency: 2.18121537320595e-5
allele num: 91692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.302G>A
  hgvsp: ENSP00000456477.1:p.Arg101Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.302G>A
  hgvsp: ENSP00000455397.1:p.Arg101Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.8G>A
  hgvsp: ENSP00000456736.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.529G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.8G>A
  hgvsp: ENSP00000342433.4:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.8G>A
  hgvsp: ENSP00000454831.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.302G>A
  hgvsp: ENSP00000401362.2:p.Arg101Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.8G>A
  hgvsp: ENSP00000457854.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.191G>A
  hgvsp: ENSP00000457227.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11116C>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg101Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-36950062-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950062
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950062
    reference: chr 15
allele count: 31
allele frequency: 3.380883828469223e-4
allele num: 91692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.529G>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.191G>C
  hgvsp: ENSP00000457227.1:p.Arg64Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.8G>C
  hgvsp: ENSP00000454831.1:p.Arg3Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.302G>C
  hgvsp: ENSP00000455397.1:p.Arg101Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.302G>C
  hgvsp: ENSP00000456477.1:p.Arg101Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.302G>C
  hgvsp: ENSP00000401362.2:p.Arg101Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.8G>C
  hgvsp: ENSP00000457854.1:p.Arg3Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.8G>C
  hgvsp: ENSP00000342433.4:p.Arg3Pro
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11116C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.8G>C
  hgvsp: ENSP00000456736.1:p.Arg3Pro
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26948
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.5e0
  variant carriers: 2
hgvs: p.Arg101Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

15-36950062-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950062
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950062
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 91692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.8G>T
  hgvsp: ENSP00000457854.1:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.191G>T
  hgvsp: ENSP00000457227.1:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.8G>T
  hgvsp: ENSP00000454831.1:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.529G>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.302G>T
  hgvsp: ENSP00000455397.1:p.Arg101Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11116C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.8G>T
  hgvsp: ENSP00000456736.1:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.302G>T
  hgvsp: ENSP00000401362.2:p.Arg101Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.302G>T
  hgvsp: ENSP00000456477.1:p.Arg101Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.8G>T
  hgvsp: ENSP00000342433.4:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg101Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-36950067-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950067
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950067
    reference: chr 15
allele count: 1
allele frequency: 1.040777669074332e-5
allele num: 96082
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11111T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.307A>T
  hgvsp: ENSP00000456477.1:p.Ile103Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.196A>T
  hgvsp: ENSP00000457227.1:p.Ile66Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.307A>T
  hgvsp: ENSP00000401362.2:p.Ile103Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.307A>T
  hgvsp: ENSP00000455397.1:p.Ile103Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.13A>T
  hgvsp: ENSP00000454831.1:p.Ile5Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.13A>T
  hgvsp: ENSP00000457854.1:p.Ile5Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.13A>T
  hgvsp: ENSP00000456736.1:p.Ile5Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.13A>T
  hgvsp: ENSP00000342433.4:p.Ile5Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.534A>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile103Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

15-36950069-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950069
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950069
    reference: chr 15
allele count: 4
allele frequency: 4.164931278633903e-5
allele num: 96040
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.309A>G
  hgvsp: ENSP00000455397.1:p.Ile103Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.15A>G
  hgvsp: ENSP00000456736.1:p.Ile5Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.309A>G
  hgvsp: ENSP00000401362.2:p.Ile103Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.536A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.15A>G
  hgvsp: ENSP00000342433.4:p.Ile5Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.198A>G
  hgvsp: ENSP00000457227.1:p.Ile66Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.15A>G
  hgvsp: ENSP00000457854.1:p.Ile5Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.309A>G
  hgvsp: ENSP00000456477.1:p.Ile103Met
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11109T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.15A>G
  hgvsp: ENSP00000454831.1:p.Ile5Met
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile103Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-36950072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950072
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950072
    reference: chr 15
allele count: 1
allele frequency: 1.042231208571309e-5
allele num: 95948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.312G>A
  hgvsp: ENST00000569302.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.312G>A
  hgvsp: ENST00000566621.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.18G>A
  hgvsp: ENST00000562877.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.18G>A
  hgvsp: ENST00000566807.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.201G>A
  hgvsp: ENST00000564586.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.312G>A
  hgvsp: ENST00000437989.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.539G>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.18G>A
  hgvsp: ENST00000338183.4:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.18G>A
  hgvsp: ENST00000567389.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11106C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu104Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

15-36950079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950079
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950079
    reference: chr 15
allele count: 2
allele frequency: 2.115059221658206e-5
allele num: 94560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.208T>C
  hgvsp: ENSP00000457227.1:p.Phe70Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.25T>C
  hgvsp: ENSP00000456736.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.319T>C
  hgvsp: ENSP00000401362.2:p.Phe107Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.25T>C
  hgvsp: ENSP00000457854.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.319T>C
  hgvsp: ENSP00000456477.1:p.Phe107Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.25T>C
  hgvsp: ENSP00000342433.4:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.546T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11099A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.319T>C
  hgvsp: ENSP00000455397.1:p.Phe107Leu
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.25T>C
  hgvsp: ENSP00000454831.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24577
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe107Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-36950084-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950084
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950084
    reference: chr 15
allele count: 1
allele frequency: 1.051414152034486e-5
allele num: 95110
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.324A>G
  hgvsp: ENST00000566621.1:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.324A>G
  hgvsp: ENST00000569302.1:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.30A>G
  hgvsp: ENST00000566807.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.551A>G
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.30A>G
  hgvsp: ENST00000567389.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.30A>G
  hgvsp: ENST00000338183.4:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11094T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.213A>G
  hgvsp: ENST00000564586.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.30A>G
  hgvsp: ENST00000562877.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.324A>G
  hgvsp: ENST00000437989.2:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu108Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-36950085-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950085
    reference: chr 15
allele count: 1
allele frequency: 1.054385187996879e-5
allele num: 94842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.31C>A
  hgvsp: ENSP00000454831.1:p.Gln11Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.31C>A
  hgvsp: ENSP00000342433.4:p.Gln11Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.325C>A
  hgvsp: ENSP00000455397.1:p.Gln109Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.552C>A
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.31C>A
  hgvsp: ENSP00000456736.1:p.Gln11Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11093G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.31C>A
  hgvsp: ENSP00000457854.1:p.Gln11Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.214C>A
  hgvsp: ENSP00000457227.1:p.Gln72Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.325C>A
  hgvsp: ENSP00000456477.1:p.Gln109Lys
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.325C>A
  hgvsp: ENSP00000401362.2:p.Gln109Lys
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln109Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

15-36950085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950085
    reference: chr 15
allele count: 1
allele frequency: 1.054385187996879e-5
allele num: 94842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.214C>T
  hgvsp: ENSP00000457227.1:p.Gln72Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.325C>T
  hgvsp: ENSP00000455397.1:p.Gln109Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.325C>T
  hgvsp: ENSP00000401362.2:p.Gln109Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11093G>A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.325C>T
  hgvsp: ENSP00000456477.1:p.Gln109Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.31C>T
  hgvsp: ENSP00000454831.1:p.Gln11Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.31C>T
  hgvsp: ENSP00000457854.1:p.Gln11Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.552C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.31C>T
  hgvsp: ENSP00000342433.4:p.Gln11Ter
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.31C>T
  hgvsp: ENSP00000456736.1:p.Gln11Ter
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln109Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

15-36950093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950093
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950093
    reference: chr 15
allele count: 5
allele frequency: 5.389441007178735e-5
allele num: 92774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.39C>T
  hgvsp: ENST00000566807.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.39C>T
  hgvsp: ENST00000338183.4:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.333C>T
  hgvsp: ENST00000566621.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.333C>T
  hgvsp: ENST00000569302.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.222C>T
  hgvsp: ENST00000564586.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.333C>T
  hgvsp: ENST00000437989.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.39C>T
  hgvsp: ENST00000562877.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11085G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.39C>T
  hgvsp: ENST00000567389.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.560C>T
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His111His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

15-36950106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950106
    reference: chr 15
allele count: 1
allele frequency: 1.141370100668843e-5
allele num: 87614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.573C>T
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.346C>T
  hgvsp: ENSP00000455397.1:p.Pro116Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.52C>T
  hgvsp: ENSP00000457854.1:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.52C>T
  hgvsp: ENSP00000456736.1:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.52C>T
  hgvsp: ENSP00000342433.4:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.346C>T
  hgvsp: ENSP00000456477.1:p.Pro116Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11072G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.52C>T
  hgvsp: ENSP00000454831.1:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.235C>T
  hgvsp: ENSP00000457227.1:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.346C>T
  hgvsp: ENSP00000401362.2:p.Pro116Ser
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro116Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-36950117-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950117
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950116
    reference: chr 15
allele count: 2
allele frequency: 2.41820424153024e-5
allele num: 82706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.573+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11060delA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.346+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.52+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.346+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.235+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.52+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.346+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.52+17delT
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.52+17delT
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: CT
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

15-36950122-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36950122
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 36950122
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 81872
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000455397
  ensembl transcript: ENST00000566621
  gene symbol: C15orf41
  hgvsc: ENST00000566621.1:c.346+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000454831
  ensembl transcript: ENST00000566807
  gene symbol: C15orf41
  hgvsc: ENST00000566807.1:c.52+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456477
  ensembl transcript: ENST00000569302
  gene symbol: C15orf41
  hgvsc: ENST00000569302.1:c.346+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000342433
  ensembl transcript: ENST00000338183
  gene symbol: C15orf41
  hgvsc: ENST00000338183.4:c.52+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457227
  ensembl transcript: ENST00000564586
  gene symbol: C15orf41
  hgvsc: ENST00000564586.1:c.235+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl transcript: ENST00000570265
  gene symbol: C15orf41
  hgvsc: ENST00000570265.1:n.573+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000401362
  ensembl transcript: ENST00000437989
  gene symbol: C15orf41
  hgvsc: ENST00000437989.2:c.346+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261191
  ensembl transcript: ENST00000565366
  gene symbol: RP11-16L14.2
  hgvsc: ENST00000565366.1:n.121+11056A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000456736
  ensembl transcript: ENST00000567389
  gene symbol: C15orf41
  hgvsc: ENST00000567389.1:c.52+16T>C
  variant of: http://identifiers.org/hgnc/26929
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186073
  ensembl protein: ENSP00000457854
  ensembl transcript: ENST00000562877
  gene symbol: C15orf41
  hgvsc: ENST00000562877.1:c.52+16T>C
  variant of: http://identifiers.org/hgnc/26929
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24031
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10986
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.63821892393321e-4
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.685009e6

FS
type: SiteQuality
SIO_000300: 6.13e0

QD
type: SiteQuality
SIO_000300: 8.59e0

MQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.988e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: -3.309e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
all individuals: 10773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24026
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.035913686434284e-5
allele num: 66270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 1.549e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.197e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.683265e6

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
all individuals: 10606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.866e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.207e0

QD
type: SiteQuality
SIO_000300: 1.635e1

DP
type: SiteQuality
SIO_000300: 2.681165e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 3.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50952510340247e-5
allele num: 66246
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

FS
type: SiteQuality
SIO_000300: 4.94e0

QD
type: SiteQuality
SIO_000300: 1.564e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.670485e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15768
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.292657704239917e-4
allele num: 7736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 4.02589e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.359e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
all individuals: 603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22495
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.185114956150747e-4
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e0

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 4.25177e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.33e-2

FS
type: SiteQuality
SIO_000300: 2.026e0

QD
type: SiteQuality
SIO_000300: 1.617e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 23271
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 4.31824e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 2.071e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.678e0

MQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

GenotypeQuality
all individuals: 629
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 936
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

QD
type: SiteQuality
SIO_000300: 2.122e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.3333e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.384e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1637
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26026
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 533
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.927e1

DP
type: SiteQuality
SIO_000300: 4.43298e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 49

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 375

GenotypeQuality
all individuals: 165
bin: 6.75e1
variant carriers: 158

GenotypeQuality
all individuals: 124
bin: 7.25e1
variant carriers: 124

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 44

GenotypeQuality
all individuals: 347
bin: 3.25e1
variant carriers: 347

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 59

GenotypeQuality
all individuals: 147
bin: 6.25e1
variant carriers: 135

GenotypeQuality
all individuals: 8476
bin: 7.5e0
variant carriers: 8082

GenotypeQuality
all individuals: 1048
bin: 2.5e0
variant carriers: 19

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 121

GenotypeQuality
all individuals: 5029
bin: 1.25e1
variant carriers: 5024

GenotypeQuality
all individuals: 8501
bin: 9.75e1
variant carriers: 8496

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 388

GenotypeQuality
all individuals: 4481
bin: 1.75e1
variant carriers: 4480

GenotypeQuality
all individuals: 1413
bin: 2.25e1
variant carriers: 1403

GenotypeQuality
all individuals: 213
bin: 7.75e1
variant carriers: 209

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 167

European (Finnish)
type: Population
allele count: 94
allele frequency: 1.0e0
allele num: 94
num of homozygotes: 47

South Asian
type: Population
allele count: 7573
allele frequency: 9.54018644494835e-1
allele num: 7938
num of homozygotes: 3621

East Asian
type: Population
allele count: 674
allele frequency: 1.0e0
allele num: 674
num of homozygotes: 337

African
type: Population
allele count: 2103
allele frequency: 9.272486772486772e-1
allele num: 2268
num of homozygotes: 978

Latino
type: Population
allele count: 443
allele frequency: 9.672489082969432e-1
allele num: 458
num of homozygotes: 214

Other
type: Population
allele count: 197
allele frequency: 9.656862745098039e-1
allele num: 204
num of homozygotes: 95

European (Non-Finnish)
type: Population
allele count: 8755
allele frequency: 9.59136722173532e-1
allele num: 9128
num of homozygotes: 4196

FS
type: SiteQuality
SIO_000300: 6.2e-1

QD
type: SiteQuality
SIO_000300: 3.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.016e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.321e1

DP
type: SiteQuality
SIO_000300: 6.64986e5

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2475
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.272264631043257e-4
allele num: 7860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.129688206055129e-4
allele num: 8852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 4.286e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.14e-2

DP
type: SiteQuality
SIO_000300: 5.61251e5

QD
type: SiteQuality
SIO_000300: 6.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeDepth
all individuals: 126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 28989
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.25e1
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GenotypeQuality
all individuals: 23
bin: 5.25e1
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GenotypeQuality
all individuals: 3675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 2.5e0
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GenotypeQuality
all individuals: 1370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
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GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
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GenotypeQuality
all individuals: 1288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.121327651939897e-4
allele num: 8918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

DP
type: SiteQuality
SIO_000300: 5.72113e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.904e0

QD
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.48e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.49e0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.119319453772107e-4
allele num: 8934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.76248e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.379e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 2.074e0

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeQuality
all individuals: 7880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
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SIO_000300: 5.92458e5

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.36e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.41598586884522e-4
allele num: 9058
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.687e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 5.93133e5

QD
type: SiteQuality
SIO_000300: 1.467e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
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SIO_000300: -6.370000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 4.464285714285714e-3
allele num: 448
num of homozygotes: 0

European (Non-Finnish)
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allele count: 44
allele frequency: 4.836227742360959e-3
allele num: 9098
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

African
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allele count: 2
allele frequency: 8.888888888888889e-4
allele num: 2250
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

DP
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 3.22e-1

InbreedingCoeff
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SIO_000300: -6.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.506024096385542e-3
allele num: 664
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 3.767897513187641e-4
allele num: 7962
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 3.29e-1

MQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -6.48e-2

FS
type: SiteQuality
SIO_000300: 2.018e0

QD
type: SiteQuality
SIO_000300: 8.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 5.92316e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.100836635843241e-4
allele num: 9084
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

VQSLOD
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MQ
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DP
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.506024096385542e-3
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.86164e5

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.108401684770561e-4
allele num: 9022
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.184e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.950000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

DP
type: SiteQuality
SIO_000300: 5.72768e5

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.261988894497728e-4
allele num: 7924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 1.939e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.442e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

QD
type: SiteQuality
SIO_000300: 6.65e0

VQSLOD
type: SiteQuality
SIO_000300: -2.041e0

DP
type: SiteQuality
SIO_000300: 5.45328e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.316321374431531e-4
allele num: 7916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.392344497607655e-3
allele num: 418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 3.646308113035551e-3
allele num: 8776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.36932e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 5.19826e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.91e-2

FS
type: SiteQuality
SIO_000300: 1.762e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.333e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.058e-1

GenotypeQuality
all individuals: 1296
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.266464032421479e-4
allele num: 7896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.19826e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.762e0

QD
type: SiteQuality
SIO_000300: 1.333e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
type: Population
allele count: 3
allele frequency: 1.401869158878505e-3
allele num: 2140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.154639175257732e-3
allele num: 194
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.98e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.86524e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.284382284382284e-5
allele num: 13728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.81649e5

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.48e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1390
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European (Finnish)
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e0

FS
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.84732e5

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 334
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 1
allele frequency: 3.875968992248062e-3
allele num: 258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.375515818431912e-3
allele num: 1454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.037e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 8.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.93578e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

GenotypeQuality
all individuals: 1179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26580
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

QD
type: SiteQuality
SIO_000300: 6.02e0

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.054951e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeQuality
all individuals: 1355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.054951e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

QD
type: SiteQuality
SIO_000300: 6.02e0

VQSLOD
type: SiteQuality
SIO_000300: -1.792e0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12527
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
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GenotypeQuality
all individuals: 3784
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27198
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.191176470588235e-4
allele num: 1088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.279831045406547e-4
allele num: 1894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.024e0

QD
type: SiteQuality
SIO_000300: 6.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 1.062674e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

GenotypeQuality
all individuals: 1229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1501
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
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GenotypeQuality
all individuals: 487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.272e-1

DP
type: SiteQuality
SIO_000300: 1.067256e6

QD
type: SiteQuality
SIO_000300: 3.311e1

GenotypeQuality
all individuals: 3033
bin: 1.75e1
variant carriers: 2437

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 524

GenotypeQuality
all individuals: 625
bin: 4.75e1
variant carriers: 593

GenotypeQuality
all individuals: 742
bin: 8.25e1
variant carriers: 634

GenotypeQuality
all individuals: 11339
bin: 2.25e1
variant carriers: 2440

GenotypeQuality
all individuals: 4098
bin: 7.5e0
variant carriers: 846

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 375

GenotypeQuality
all individuals: 650
bin: 5.25e1
variant carriers: 597

GenotypeQuality
all individuals: 1382
bin: 1.25e1
variant carriers: 1085

GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 788

GenotypeQuality
all individuals: 1081
bin: 6.75e1
variant carriers: 851

GenotypeQuality
all individuals: 977
bin: 9.25e1
variant carriers: 911

GenotypeQuality
all individuals: 2449
bin: 6.25e1
variant carriers: 979

GenotypeQuality
all individuals: 1805
bin: 3.25e1
variant carriers: 1621

GenotypeQuality
all individuals: 1587
bin: 2.75e1
variant carriers: 1307

GenotypeQuality
all individuals: 712
bin: 7.25e1
variant carriers: 598

GenotypeQuality
all individuals: 18127
bin: 9.75e1
variant carriers: 16884

Other
type: Population
allele count: 225
allele frequency: 5.382775119617225e-1
allele num: 418
num of homozygotes: 48

East Asian
type: Population
allele count: 2878
allele frequency: 6.708624708624709e-1
allele num: 4290
num of homozygotes: 874

African
type: Population
allele count: 2311
allele frequency: 4.380212282031842e-1
allele num: 5276
num of homozygotes: 403

European (Finnish)
type: Population
allele count: 1040
allele frequency: 5.128205128205128e-1
allele num: 2028
num of homozygotes: 179

South Asian
type: Population
allele count: 6015
allele frequency: 6.000598563447725e-1
allele num: 10024
num of homozygotes: 1757

European (Non-Finnish)
type: Population
allele count: 13919
allele frequency: 5.148701634978176e-1
allele num: 27034
num of homozygotes: 2875

Latino
type: Population
allele count: 1392
allele frequency: 4.901408450704225e-1
allele num: 2840
num of homozygotes: 198

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.414513e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.85e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeQuality
all individuals: 312
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4290
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 313
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GenotypeQuality
all individuals: 1051
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GenotypeQuality
all individuals: 1441
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variant carriers: 0

GenotypeQuality
all individuals: 516
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GenotypeQuality
all individuals: 173
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variant carriers: 0

GenotypeQuality
all individuals: 2745
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variant carriers: 0

GenotypeQuality
all individuals: 4822
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variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.923682914820286e-5
allele num: 20310
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

DP
type: SiteQuality
SIO_000300: 9.90732e5

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.707e1

GenotypeQuality
all individuals: 917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 6.75e1
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 11234
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
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GenotypeQuality
all individuals: 1434
bin: 1.25e1
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GenotypeQuality
all individuals: 4289
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 4755
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GenotypeQuality
all individuals: 2636
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GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 157
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.112347052280312e-4
allele num: 8990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -2.521e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.87265e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 8.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 3.308e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1985
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14574
bin: 7.5e0
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GenotypeQuality
all individuals: 4283
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Other
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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allele num: 1366
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Latino
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Other
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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African
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European (Finnish)
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Other
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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Latino
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African
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European (Finnish)
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South Asian
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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MQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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South Asian
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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Other
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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FS
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DP
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MQ
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VQSLOD
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SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

QD
type: SiteQuality
SIO_000300: 1.525e1

GenotypeQuality
all individuals: 681
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.352432981832041e-5
allele num: 31484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.652e-1

FS
type: SiteQuality
SIO_000300: 9.709e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 9.62715e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

QD
type: SiteQuality
SIO_000300: 1.566e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.300595238095238e-5
allele num: 10752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.675e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e0

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.109699e6

GenotypeQuality
all individuals: 565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 767
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variant carriers: 0

GenotypeQuality
all individuals: 21286
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.177079900183624e-4
allele num: 42478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.145441e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 9.375999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

QD
type: SiteQuality
SIO_000300: 9.34e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28836
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
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variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.657824933687003e-4
allele num: 6032
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 4.534e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.224e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

DP
type: SiteQuality
SIO_000300: 1.200581e6

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 609
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 249
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 805
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48414
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.742e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.231634e6

MQRankSum
type: SiteQuality
SIO_000300: -1.566e0

QD
type: SiteQuality
SIO_000300: 5.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 635
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1104
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
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variant carriers: 1

GenotypeQuality
all individuals: 479
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variant carriers: 2

GenotypeQuality
all individuals: 2510
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.527650473571647e-4
allele num: 6546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.242152466367713e-4
allele num: 4460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.151277918489523e-4
allele num: 8686
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.339046598821639e-4
allele num: 7468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.816053916622947e-4
allele num: 49558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.262677e6

FS
type: SiteQuality
SIO_000300: 5.503e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.396e0

QD
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 2697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2426
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.122838535818549e-4
allele num: 8906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.315443304393581e-4
allele num: 7602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.968658949523585e-5
allele num: 50796
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.058e1

FS
type: SiteQuality
SIO_000300: 9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.270934e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 332
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1569
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GenotypeQuality
all individuals: 2422
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 715
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.552322613578356e-4
allele num: 7836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.316135825217162e-4
allele num: 53186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.313533e6

QD
type: SiteQuality
SIO_000300: 1.29e1

FS
type: SiteQuality
SIO_000300: 3.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
all individuals: 721
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.876665540667342e-5
allele num: 53286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.794e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.093e0

QD
type: SiteQuality
SIO_000300: 1.077e1

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

DP
type: SiteQuality
SIO_000300: 1.312708e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.754176521380035e-5
allele num: 53274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12746
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQ
type: SiteQuality
SIO_000300: 5.838e1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 2.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

DP
type: SiteQuality
SIO_000300: 1.311685e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

GenotypeQuality
all individuals: 1627
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.880220646178094e-5
allele num: 12690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.958250107703756e-5
allele num: 51066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

FS
type: SiteQuality
SIO_000300: 2.15421e2

DP
type: SiteQuality
SIO_000300: 1.292285e6

VQSLOD
type: SiteQuality
SIO_000300: -2.159e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.646e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 1291
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1383
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1627
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 13782
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 26755
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 4

GenotypeQuality
all individuals: 1349
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2042
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 324
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variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2313
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 14
allele frequency: 3.508771929824561e-3
allele num: 3990
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.393743257820927e-4
allele num: 7416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12690
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.115264797507788e-3
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.154075118474131e-4
allele num: 51066
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.646e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

QD
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: -2.159e2

FS
type: SiteQuality
SIO_000300: 2.15421e2

DP
type: SiteQuality
SIO_000300: 1.292285e6

GenotypeQuality
all individuals: 529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 2.15421e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.646e0

DP
type: SiteQuality
SIO_000300: 1.292285e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

VQSLOD
type: SiteQuality
SIO_000300: -2.159e2

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.271617497456765e-4
allele num: 7864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53472
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

FS
type: SiteQuality
SIO_000300: 5.545e0

QD
type: SiteQuality
SIO_000300: 1.302e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

DP
type: SiteQuality
SIO_000300: 1.28167e6

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.019e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2914
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.081782778018174e-4
allele num: 9244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.616084465910367e-5
allele num: 53418
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 4.112e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.277218e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 732
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GenotypeQuality
all individuals: 29572
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GenotypeQuality
all individuals: 860
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.873571401806123e-5
allele num: 53374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.276479e6

ClippingRankSum
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SIO_000300: 5.1e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: -1.4e-3

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -2.27e-1

QD
type: SiteQuality
SIO_000300: 8.52e0

FS
type: SiteQuality
SIO_000300: 3.634e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12826
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.786014462575247e-5
allele num: 52826
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.404e0

QD
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
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MQRankSum
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SIO_000300: 1.01e-1

ReadPosRankSum
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DP
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InbreedingCoeff
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SIO_000300: -3.0e-3

VQSLOD
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ClippingRankSum
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SIO_000300: 3.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12874
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.892290807251258e-5
allele num: 52846
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
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SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.508e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.778469197261979e-5
allele num: 12856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.024e1

FS
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 1.257615e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.211e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.898830320522558e-5
allele num: 52664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.024e1

BaseQRankSum
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SIO_000300: -2.211e0

DP
type: SiteQuality
SIO_000300: 1.257615e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

FS
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4754
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.833398148868321e-5
allele num: 51428
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.955082742316785e-4
allele num: 6768
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 2.065774252189721e-5
allele num: 48408
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.396377385034731e-5
allele num: 45492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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VQSLOD
type: SiteQuality
SIO_000300: -8.861e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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