15-75014027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014027
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014027
    reference: chr 15
allele count: 152
allele frequency: 1.25493304271726e-3
allele num: 121122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.857T>C
  hgvsp: ENSP00000378489.4:p.Ile286Thr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.74T>C
  hgvsp: ENSP00000457668.1:p.Ile25Thr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.857T>C
  hgvsp: ENSP00000378488.2:p.Ile286Thr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.857T>C
  hgvsp: ENSP00000456585.1:p.Ile286Thr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.857T>C
  hgvsp: ENSP00000369050.3:p.Ile286Thr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.74T>C
  hgvsp: ENSP00000455846.1:p.Ile25Thr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*446T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*94T>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7066
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile286Thr
num of homozygotes: 2
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

15-75014030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014030
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014030
    reference: chr 15
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*443T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.854T>C
  hgvsp: ENSP00000378488.2:p.Leu285Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.854T>C
  hgvsp: ENSP00000456585.1:p.Leu285Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.854T>C
  hgvsp: ENSP00000369050.3:p.Leu285Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.854T>C
  hgvsp: ENSP00000378489.4:p.Leu285Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.71T>C
  hgvsp: ENSP00000455846.1:p.Leu24Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.71T>C
  hgvsp: ENSP00000457668.1:p.Leu24Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*91T>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu285Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-75014033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014033
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014033
    reference: chr 15
allele count: 3
allele frequency: 2.478519497686715e-5
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*440G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.68G>A
  hgvsp: ENSP00000455846.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.851G>A
  hgvsp: ENSP00000378489.4:p.Ser284Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.851G>A
  hgvsp: ENSP00000378488.2:p.Ser284Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.851G>A
  hgvsp: ENSP00000369050.3:p.Ser284Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.851G>A
  hgvsp: ENSP00000456585.1:p.Ser284Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.68G>A
  hgvsp: ENSP00000457668.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser284Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-75014035-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014035
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014034
    reference: chr 15
allele count: 2
allele frequency: 1.653138483410755e-5
allele num: 120982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*437delA
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.65delA
  hgvsp: ENSP00000455846.1:p.Asp22AlafsTer3
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.848delA
  hgvsp: ENSP00000378489.4:p.Asp283AlafsTer3
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.848delA
  hgvsp: ENSP00000456585.1:p.Asp283AlafsTer3
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.848delA
  hgvsp: ENSP00000378488.2:p.Asp283AlafsTer3
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.848delA
  hgvsp: ENSP00000369050.3:p.Asp283AlafsTer3
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.65delA
  hgvsp: ENSP00000457668.1:p.Asp22AlafsTer3
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*85delA
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp283AlafsTer3
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

15-75014043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014043
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014043
    reference: chr 15
allele count: 16
allele frequency: 1.325490845828846e-4
allele num: 120710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*430A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*78A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.841A>G
  hgvsp: ENSP00000378489.4:p.Ile281Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.841A>G
  hgvsp: ENSP00000456585.1:p.Ile281Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.841A>G
  hgvsp: ENSP00000378488.2:p.Ile281Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.58A>G
  hgvsp: ENSP00000457668.1:p.Ile20Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.841A>G
  hgvsp: ENSP00000369050.3:p.Ile281Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.58A>G
  hgvsp: ENSP00000455846.1:p.Ile20Val
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8006
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile281Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

15-75014044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014044
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014044
    reference: chr 15
allele count: 2
allele frequency: 1.656836105772417e-5
allele num: 120712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*429C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.57C>T
  hgvsp: ENST00000564596.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.840C>T
  hgvsp: ENST00000395049.4:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.840C>T
  hgvsp: ENST00000395048.2:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.840C>T
  hgvsp: ENST00000567032.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.840C>T
  hgvsp: ENST00000379727.3:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*77C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.57C>T
  hgvsp: ENST00000566503.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34624
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8037
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp280Asp
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-75014048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014048
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014048
    reference: chr 15
allele count: 1
allele frequency: 8.296138976920141e-6
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.53G>A
  hgvsp: ENSP00000455846.1:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.836G>A
  hgvsp: ENSP00000378488.2:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.836G>A
  hgvsp: ENSP00000378489.4:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.836G>A
  hgvsp: ENSP00000456585.1:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.53G>A
  hgvsp: ENSP00000457668.1:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.836G>A
  hgvsp: ENSP00000369050.3:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*73G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*425G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg279Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-75014049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014049
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014049
    reference: chr 15
allele count: 36
allele frequency: 2.986362278926237e-4
allele num: 120548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*424C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*72C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.52C>T
  hgvsp: ENSP00000455846.1:p.Arg18Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.835C>T
  hgvsp: ENSP00000378488.2:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.835C>T
  hgvsp: ENSP00000369050.3:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.835C>T
  hgvsp: ENSP00000378489.4:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.52C>T
  hgvsp: ENSP00000457668.1:p.Arg18Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.835C>T
  hgvsp: ENSP00000456585.1:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg279Trp
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

15-75014062-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014062
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014062
    reference: chr 15
allele count: 1
allele frequency: 8.345294922722569e-6
allele num: 119828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.43-4T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.826-4T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*411T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*63-4T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.826-4T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.826-4T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.826-4T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.43-4T>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 6.75e1
  variant carriers: 0
hgvs: c.826-4T>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

15-75014068-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014068
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014068
    reference: chr 15
allele count: 4
allele frequency: 3.34213428695565e-5
allele num: 119684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*405C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.43-10C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.826-10C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.826-10C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*63-10C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.826-10C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.43-10C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.826-10C>G
  variant of: http://identifiers.org/hgnc/2595
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34622
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

15-75014073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014073
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014073
    reference: chr 15
allele count: 1
allele frequency: 8.370302167908262e-6
allele num: 119470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*400C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.826-15C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.826-15C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.43-15C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*63-15C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.826-15C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.826-15C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.43-15C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/15-75014078-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014078
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014078
    reference: chr 15
allele count: 6
allele frequency: 5.033472592741732e-5
allele num: 119202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.826-20G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.826-20G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.826-20G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*63-20G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*395G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.43-20G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.826-20G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.43-20G>T
  variant of: http://identifiers.org/hgnc/2595
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-75014081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014081
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014081
    reference: chr 15
allele count: 2
allele frequency: 1.677796047112513e-5
allele num: 119204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*63-23C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.826-23C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*392C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.43-23C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.826-23C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.826-23C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.826-23C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.43-23C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

15-75014088-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014088
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014088
    reference: chr 15
allele count: 4
allele frequency: 3.36354921713392e-5
allele num: 118922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.826-30T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*63-30T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*385T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.826-30T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.43-30T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.826-30T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.43-30T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.826-30T>C
  variant of: http://identifiers.org/hgnc/2595
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34614
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-75014564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014564
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014564
    reference: chr 15
allele count: 5
allele frequency: 4.489781257857117e-5
allele num: 111364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+50G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+50G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16147
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-75014567-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014567
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014567
    reference: chr 15
allele count: 1
allele frequency: 8.967323074715735e-6
allele num: 111516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+47C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+47C>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-75014569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014569
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014569
    reference: chr 15
allele count: 589
allele frequency: 5.268336314847943e-3
allele num: 111800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+45A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+45A>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 16584
  bin: 2.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 20809
  bin: 2.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 1.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 18
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

15-75014572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014572
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014572
    reference: chr 15
allele count: 1
allele frequency: 8.921243264461336e-6
allele num: 112092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+42G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+42G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32872
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-75014577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014577
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014577
    reference: chr 15
allele count: 1
allele frequency: 8.895530885283234e-6
allele num: 112416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+37C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+37C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/15-75014586-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014586
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014586
    reference: chr 15
allele count: 3
allele frequency: 2.645829291094139e-5
allele num: 113386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+28G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+28G>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26987
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

15-75014593-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014593
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014593
    reference: chr 15
allele count: 3
allele frequency: 2.618852244356373e-5
allele num: 114554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+21G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+21G>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42433
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-75014602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014602
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014602
    reference: chr 15
allele count: 1
allele frequency: 8.606592649969876e-6
allele num: 116190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+12G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+12G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/15-75014603-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014603
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014603
    reference: chr 15
allele count: 1
allele frequency: 8.590474881451447e-6
allele num: 116408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.825+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.825+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*62+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*62+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.42+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.825+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.825+11G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.42+11G>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

15-75014616-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014616
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014616
    reference: chr 15
allele count: 2
allele frequency: 1.678302900107411e-5
allele num: 119168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.823A>G
  hgvsp: ENSP00000369050.3:p.Lys275Glu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.40A>G
  hgvsp: ENSP00000457668.1:p.Lys14Glu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.40A>G
  hgvsp: ENSP00000455846.1:p.Lys14Glu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.823A>G
  hgvsp: ENSP00000378488.2:p.Lys275Glu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*60A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.823A>G
  hgvsp: ENSP00000456585.1:p.Lys275Glu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.823A>G
  hgvsp: ENSP00000378489.4:p.Lys275Glu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*60A>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys275Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-75014623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014623
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014623
    reference: chr 15
allele count: 2
allele frequency: 1.663367654152597e-5
allele num: 120238
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.816C>T
  hgvsp: ENST00000379727.3:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*53C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.33C>T
  hgvsp: ENST00000566503.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.816C>T
  hgvsp: ENST00000395048.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.33C>T
  hgvsp: ENST00000564596.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*53C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.816C>T
  hgvsp: ENST00000567032.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.816C>T
  hgvsp: ENST00000395049.4:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr272Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

15-75014634-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014634
    reference: chr 15
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*42C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.805C>A
  hgvsp: ENSP00000456585.1:p.His269Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.805C>A
  hgvsp: ENSP00000378488.2:p.His269Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.22C>A
  hgvsp: ENSP00000455846.1:p.His8Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.22C>A
  hgvsp: ENSP00000457668.1:p.His8Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*42C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.805C>A
  hgvsp: ENSP00000369050.3:p.His269Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.805C>A
  hgvsp: ENSP00000378489.4:p.His269Asn
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His269Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

15-75014637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014637
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014637
    reference: chr 15
allele count: 1
allele frequency: 8.262823902696986e-6
allele num: 121024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.802G>A
  hgvsp: ENSP00000456585.1:p.Glu268Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.802G>A
  hgvsp: ENSP00000369050.3:p.Glu268Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.802G>A
  hgvsp: ENSP00000378489.4:p.Glu268Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.19G>A
  hgvsp: ENSP00000455846.1:p.Glu7Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.802G>A
  hgvsp: ENSP00000378488.2:p.Glu268Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.19G>A
  hgvsp: ENSP00000457668.1:p.Glu7Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu268Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

15-75014641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014641
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014641
    reference: chr 15
allele count: 3
allele frequency: 2.47610558114198e-5
allele num: 121158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.798C>T
  hgvsp: ENST00000567032.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.798C>T
  hgvsp: ENST00000379727.3:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.798C>T
  hgvsp: ENST00000395049.4:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.798C>T
  hgvsp: ENST00000395048.2:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.15C>T
  hgvsp: ENST00000564596.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.15C>T
  hgvsp: ENST00000566503.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val266Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-75014645-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014645
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014645
    reference: chr 15
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*31T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.794T>G
  hgvsp: ENSP00000369050.3:p.Met265Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*31T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.794T>G
  hgvsp: ENSP00000378489.4:p.Met265Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.11T>G
  hgvsp: ENSP00000457668.1:p.Met4Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.794T>G
  hgvsp: ENSP00000456585.1:p.Met265Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.11T>G
  hgvsp: ENSP00000455846.1:p.Met4Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.794T>G
  hgvsp: ENSP00000378488.2:p.Met265Arg
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met265Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-75014646-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014646
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014646
    reference: chr 15
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.793A>G
  hgvsp: ENSP00000378489.4:p.Met265Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.793A>G
  hgvsp: ENSP00000378488.2:p.Met265Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.793A>G
  hgvsp: ENSP00000369050.3:p.Met265Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*30A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*30A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.793A>G
  hgvsp: ENSP00000456585.1:p.Met265Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.10A>G
  hgvsp: ENSP00000457668.1:p.Met4Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.10A>G
  hgvsp: ENSP00000455846.1:p.Met4Val
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met265Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

15-75014647-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014647
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014647
    reference: chr 15
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*29G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.792G>C
  hgvsp: ENSP00000456585.1:p.Lys264Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.792G>C
  hgvsp: ENSP00000378489.4:p.Lys264Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.792G>C
  hgvsp: ENSP00000369050.3:p.Lys264Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.792G>C
  hgvsp: ENSP00000378488.2:p.Lys264Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.9G>C
  hgvsp: ENSP00000455846.1:p.Lys3Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.9G>C
  hgvsp: ENSP00000457668.1:p.Lys3Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*29G>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys264Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-75014655-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014655
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014655
    reference: chr 15
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.1A>G
  hgvsp: ENSP00000457668.1:p.Met1?
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.784A>G
  hgvsp: ENSP00000378488.2:p.Met262Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.784A>G
  hgvsp: ENSP00000378489.4:p.Met262Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.1A>G
  hgvsp: ENSP00000455846.1:p.Met1?
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.784A>G
  hgvsp: ENSP00000369050.3:p.Met262Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.784A>G
  hgvsp: ENSP00000456585.1:p.Met262Val
  variant of: http://identifiers.org/hgnc/2595
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

15-75014656-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014656
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014656
    reference: chr 15
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.783C>A
  hgvsp: ENSP00000369050.3:p.Phe261Leu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.783C>A
  hgvsp: ENSP00000378488.2:p.Phe261Leu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-1C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.783C>A
  hgvsp: ENSP00000456585.1:p.Phe261Leu
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*20C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-1C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*20C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.783C>A
  hgvsp: ENSP00000378489.4:p.Phe261Leu
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe261Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-75014667-ACTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014667
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014664
    reference: chr 15
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.769_771delAAG
  hgvsp: ENSP00000378489.4:p.Lys257del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.769_771delAAG
  hgvsp: ENSP00000456585.1:p.Lys257del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-15_-13delAAG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.769_771delAAG
  hgvsp: ENSP00000378488.2:p.Lys257del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.769_771delAAG
  hgvsp: ENSP00000369050.3:p.Lys257del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*6_*8delAAG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*6_*8delAAG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-15_-13delAAG
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 22049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys257del
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ACTT
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

15-75014673-C-CATTCAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014679
    reference: chr 15
allele count: 4
allele frequency: 3.295870274545994e-5
allele num: 121364
alternate allele: CATTCAG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.760_765dupCTGAAT
  hgvsp: ENSP00000378489.4:p.Leu254_Asn255dup
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.760_765dupCTGAAT
  hgvsp: ENSP00000456585.1:p.Leu254_Asn255dup
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.567_*2dupCTGAAT
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.760_765dupCTGAAT
  hgvsp: ENSP00000369050.3:p.Leu254_Asn255dup
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.760_765dupCTGAAT
  hgvsp: ENSP00000378488.2:p.Leu254_Asn255dup
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-24_-19dupCTGAAT
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-24_-19dupCTGAAT
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.567_*2dupCTGAAT
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu254_Asn255dup
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-75014673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014673
    reference: chr 15
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.766G>A
  hgvsp: ENSP00000456585.1:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.766G>A
  hgvsp: ENSP00000369050.3:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.766G>A
  hgvsp: ENSP00000378489.4:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.766G>A
  hgvsp: ENSP00000378488.2:p.Glu256Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu256Lys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-75014674-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014674
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014674
    reference: chr 15
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-19T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.765T>A
  hgvsp: ENSP00000378488.2:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.*2T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.*2T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.765T>A
  hgvsp: ENSP00000369050.3:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-19T>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.765T>A
  hgvsp: ENSP00000456585.1:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.765T>A
  hgvsp: ENSP00000378489.4:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn255Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-75014688-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014688
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014688
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-33T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.751T>G
  hgvsp: ENSP00000378488.2:p.Phe251Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-6T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-6T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.751T>G
  hgvsp: ENSP00000369050.3:p.Phe251Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.751T>G
  hgvsp: ENSP00000378489.4:p.Phe251Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-33T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.751T>G
  hgvsp: ENSP00000456585.1:p.Phe251Val
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe251Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/15-75014692-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014692
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014692
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.747T>G
  hgvsp: ENSP00000378489.4:p.Asn249Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-37T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-10T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.747T>G
  hgvsp: ENSP00000369050.3:p.Asn249Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-37T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.747T>G
  hgvsp: ENSP00000378488.2:p.Asn249Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-10T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.747T>G
  hgvsp: ENSP00000456585.1:p.Asn249Lys
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn249Lys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

15-75014693-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014693
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014693
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-38A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.746A>T
  hgvsp: ENSP00000456585.1:p.Asn249Ile
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.746A>T
  hgvsp: ENSP00000378489.4:p.Asn249Ile
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-11A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.746A>T
  hgvsp: ENSP00000369050.3:p.Asn249Ile
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.746A>T
  hgvsp: ENSP00000378488.2:p.Asn249Ile
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-11A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-38A>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn249Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-75014696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014696
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014696
    reference: chr 15
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-14T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.743T>C
  hgvsp: ENSP00000378488.2:p.Leu248Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.743T>C
  hgvsp: ENSP00000369050.3:p.Leu248Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.743T>C
  hgvsp: ENSP00000456585.1:p.Leu248Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.743T>C
  hgvsp: ENSP00000378489.4:p.Leu248Pro
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-14T>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48781
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu248Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

15-75014703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014703
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014703
    reference: chr 15
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-21C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.736C>T
  hgvsp: ENSP00000378489.4:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.736C>T
  hgvsp: ENSP00000456585.1:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.736C>T
  hgvsp: ENSP00000369050.3:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.736C>T
  hgvsp: ENSP00000378488.2:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-21C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro246Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-75014704-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014704
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014704
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-22C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.735C>A
  hgvsp: ENSP00000378488.2:p.Asn245Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-49C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-22C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.735C>A
  hgvsp: ENSP00000369050.3:p.Asn245Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-49C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.735C>A
  hgvsp: ENSP00000378489.4:p.Asn245Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.735C>A
  hgvsp: ENSP00000456585.1:p.Asn245Lys
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6765
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn245Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

15-75014706-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014706
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014706
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.733A>G
  hgvsp: ENSP00000369050.3:p.Asn245Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-24A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.733A>G
  hgvsp: ENSP00000378488.2:p.Asn245Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.733A>G
  hgvsp: ENSP00000456585.1:p.Asn245Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-24A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.733A>G
  hgvsp: ENSP00000378489.4:p.Asn245Asp
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn245Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/15-75014711-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014711
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014711
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.728T>G
  hgvsp: ENSP00000456585.1:p.Leu243Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-29T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.728T>G
  hgvsp: ENSP00000378489.4:p.Leu243Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.728T>G
  hgvsp: ENSP00000369050.3:p.Leu243Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-56T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-56T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-29T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.728T>G
  hgvsp: ENSP00000378488.2:p.Leu243Arg
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48799
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu243Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

15-75014718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014718
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014718
    reference: chr 15
allele count: 9
allele frequency: 7.413631196560076e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.721C>T
  hgvsp: ENSP00000369050.3:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-36C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.721C>T
  hgvsp: ENSP00000378489.4:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-36C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.721C>T
  hgvsp: ENSP00000378488.2:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.721C>T
  hgvsp: ENSP00000456585.1:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg241Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

15-75014727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014727
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014727
    reference: chr 15
allele count: 144
allele frequency: 1.186161449752883e-3
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.712C>T
  hgvsp: ENSP00000456585.1:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-72C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-72C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.712C>T
  hgvsp: ENSP00000378489.4:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.712C>T
  hgvsp: ENSP00000369050.3:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-45C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.712C>T
  hgvsp: ENSP00000378488.2:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-45C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 22200
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro238Ser
num of homozygotes: 1
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-75014728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014728
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014728
    reference: chr 15
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.711C>T
  hgvsp: ENST00000395048.2:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.711C>T
  hgvsp: ENST00000567032.1:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.711C>T
  hgvsp: ENST00000395049.4:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.711C>T
  hgvsp: ENST00000379727.3:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-46C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-46C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile237Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-75014731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014731
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014731
    reference: chr 15
allele count: 16
allele frequency: 1.317935454111135e-4
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.708C>T
  hgvsp: ENST00000567032.1:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.708C>T
  hgvsp: ENST00000395048.2:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.708C>T
  hgvsp: ENST00000379727.3:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-49C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.708C>T
  hgvsp: ENST00000395049.4:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-49C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe236Phe
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-75014735-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014735
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014735
    reference: chr 15
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-53A>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-80A>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.704A>C
  hgvsp: ENSP00000456585.1:p.Asp235Ala
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.704A>C
  hgvsp: ENSP00000378488.2:p.Asp235Ala
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.704A>C
  hgvsp: ENSP00000378489.4:p.Asp235Ala
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.704A>C
  hgvsp: ENSP00000369050.3:p.Asp235Ala
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-53A>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-80A>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp235Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

15-75014736-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014736
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-54G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.703G>C
  hgvsp: ENSP00000378488.2:p.Asp235His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.703G>C
  hgvsp: ENSP00000456585.1:p.Asp235His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-54G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.703G>C
  hgvsp: ENSP00000369050.3:p.Asp235His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.703G>C
  hgvsp: ENSP00000378489.4:p.Asp235His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-81G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-81G>C
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp235His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

15-75014741-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014741
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014741
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.698C>G
  hgvsp: ENSP00000378489.4:p.Pro233Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-59C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.698C>G
  hgvsp: ENSP00000456585.1:p.Pro233Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.698C>G
  hgvsp: ENSP00000369050.3:p.Pro233Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.698C>G
  hgvsp: ENSP00000378488.2:p.Pro233Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-86C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-59C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-86C>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro233Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-75014741-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014741
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014741
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-59C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.698C>A
  hgvsp: ENSP00000378489.4:p.Pro233Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.698C>A
  hgvsp: ENSP00000369050.3:p.Pro233Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.698C>A
  hgvsp: ENSP00000456585.1:p.Pro233Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-86C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.698C>A
  hgvsp: ENSP00000378488.2:p.Pro233Gln
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-86C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-59C>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro233Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-75014758-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014758
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014758
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.681G>C
  hgvsp: ENST00000395049.4:c.681G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.681G>C
  hgvsp: ENST00000395048.2:c.681G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-76G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-103G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.681G>C
  hgvsp: ENST00000567032.1:c.681G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-103G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-76G>C
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.681G>C
  hgvsp: ENST00000379727.3:c.681G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val227Val
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

15-75014762-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014762
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014761
    reference: chr 15
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.676delG
  hgvsp: ENSP00000369050.3:p.Glu226ArgfsTer23
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-108delG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-108delG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.676delG
  hgvsp: ENSP00000378488.2:p.Glu226ArgfsTer23
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-81delG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.676delG
  hgvsp: ENSP00000456585.1:p.Glu226ArgfsTer23
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-81delG
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.676delG
  hgvsp: ENSP00000378489.4:p.Glu226ArgfsTer23
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu226ArgfsTer23
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: TC
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-75014766-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014766
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014766
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.673G>T
  hgvsp: ENSP00000378488.2:p.Gly225Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.673G>T
  hgvsp: ENSP00000456585.1:p.Gly225Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-84G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-84G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.673G>T
  hgvsp: ENSP00000369050.3:p.Gly225Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.673G>T
  hgvsp: ENSP00000378489.4:p.Gly225Trp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly225Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

15-75014766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014766
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014766
    reference: chr 15
allele count: 9
allele frequency: 7.413142678286081e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.673G>A
  hgvsp: ENSP00000369050.3:p.Gly225Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.673G>A
  hgvsp: ENSP00000378489.4:p.Gly225Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-84G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-111G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-84G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.673G>A
  hgvsp: ENSP00000378488.2:p.Gly225Arg
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-111G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.673G>A
  hgvsp: ENSP00000456585.1:p.Gly225Arg
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly225Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-75014767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014767
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014767
    reference: chr 15
allele count: 9
allele frequency: 7.413264801818721e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-85C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-112C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.672C>T
  hgvsp: ENST00000395049.4:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.672C>T
  hgvsp: ENST00000379727.3:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-112C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.672C>T
  hgvsp: ENST00000395048.2:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-85C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.672C>T
  hgvsp: ENST00000567032.1:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48822
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe224Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

15-75014769-AATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014769
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014766
    reference: chr 15
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.667_669delAAT
  hgvsp: ENSP00000378489.4:p.Asn223del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-117_-115delAAT
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-117_-115delAAT
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-90_564-88delAAT
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.667_669delAAT
  hgvsp: ENSP00000369050.3:p.Asn223del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.667_669delAAT
  hgvsp: ENSP00000378488.2:p.Asn223del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.667_669delAAT
  hgvsp: ENSP00000456585.1:p.Asn223del
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-90_564-88delAAT
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 22306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Asn223del
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: AATT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

15-75014774-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014774
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014774
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-119A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-119A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.564-92A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.665A>G
  hgvsp: ENSP00000378488.2:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.665A>G
  hgvsp: ENSP00000378489.4:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.665A>G
  hgvsp: ENSP00000456585.1:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.665A>G
  hgvsp: ENSP00000369050.3:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.564-92A>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn222Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-75014782-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014782
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014782
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+94C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-127C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.657C>A
  hgvsp: ENSP00000378489.4:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.657C>A
  hgvsp: ENSP00000369050.3:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.657C>A
  hgvsp: ENSP00000456585.1:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.657C>A
  hgvsp: ENSP00000378488.2:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+94C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-127C>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn219Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

15-75014793-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014793
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014793
    reference: chr 15
allele count: 14
allele frequency: 1.153117535623095e-4
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-138A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.646A>T
  hgvsp: ENSP00000369050.3:p.Ser216Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-138A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+83A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.646A>T
  hgvsp: ENSP00000378488.2:p.Ser216Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.646A>T
  hgvsp: ENSP00000456585.1:p.Ser216Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+83A>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.646A>T
  hgvsp: ENSP00000378489.4:p.Ser216Cys
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser216Cys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-75014793-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014793
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014793
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.646A>G
  hgvsp: ENSP00000369050.3:p.Ser216Gly
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.646A>G
  hgvsp: ENSP00000378488.2:p.Ser216Gly
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+83A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.646A>G
  hgvsp: ENSP00000378489.4:p.Ser216Gly
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-138A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+83A>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.646A>G
  hgvsp: ENSP00000456585.1:p.Ser216Gly
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-138A>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser216Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/15-75014797-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014797
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.642G>T
  hgvsp: ENST00000567032.1:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.642G>T
  hgvsp: ENST00000379727.3:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.642G>T
  hgvsp: ENST00000395048.2:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+79G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+79G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.642G>T
  hgvsp: ENST00000395049.4:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-142G>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-142G>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu214Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

15-75014799-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014799
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014799
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.640C>G
  hgvsp: ENSP00000378488.2:p.Leu214Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+77C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.640C>G
  hgvsp: ENSP00000456585.1:p.Leu214Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.640C>G
  hgvsp: ENSP00000378489.4:p.Leu214Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+77C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.640C>G
  hgvsp: ENSP00000369050.3:p.Leu214Val
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-144C>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-144C>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu214Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

15-75014808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014808
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014808
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.631C>T
  hgvsp: ENSP00000369050.3:p.His211Tyr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-153C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.631C>T
  hgvsp: ENSP00000378488.2:p.His211Tyr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.631C>T
  hgvsp: ENSP00000456585.1:p.His211Tyr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+68C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.631C>T
  hgvsp: ENSP00000378489.4:p.His211Tyr
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+68C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-153C>T
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His211Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-75014814-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014814
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+62C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-159C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.625C>A
  hgvsp: ENSP00000456585.1:p.His209Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.625C>A
  hgvsp: ENSP00000378488.2:p.His209Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-159C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.625C>A
  hgvsp: ENSP00000369050.3:p.His209Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.625C>A
  hgvsp: ENSP00000378489.4:p.His209Asn
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+62C>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His209Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/15-75014820-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014820
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014820
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.619T>G
  hgvsp: ENSP00000456585.1:p.Tyr207Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.619T>G
  hgvsp: ENSP00000378489.4:p.Tyr207Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.619T>G
  hgvsp: ENSP00000378488.2:p.Tyr207Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-165T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.619T>G
  hgvsp: ENSP00000369050.3:p.Tyr207Asp
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+56T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-165T>G
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+56T>G
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr207Asp
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

15-75014822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014822
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014822
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.617G>A
  hgvsp: ENSP00000378488.2:p.Arg206His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.617G>A
  hgvsp: ENSP00000369050.3:p.Arg206His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.617G>A
  hgvsp: ENSP00000378489.4:p.Arg206His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-167G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+54G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-167G>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.617G>A
  hgvsp: ENSP00000456585.1:p.Arg206His
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+54G>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg206His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-75014823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014823
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014823
    reference: chr 15
allele count: 10
allele frequency: 8.236553825879252e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.616C>T
  hgvsp: ENSP00000378488.2:p.Arg206Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.616C>T
  hgvsp: ENSP00000369050.3:p.Arg206Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+53C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-168C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-168C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.616C>T
  hgvsp: ENSP00000378489.4:p.Arg206Cys
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+53C>T
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.616C>T
  hgvsp: ENSP00000456585.1:p.Arg206Cys
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg206Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-75014823-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75014823
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75014823
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378489
  ensembl transcript: ENST00000395049
  gene symbol: CYP1A1
  hgvsc: ENST00000395049.4:c.616C>A
  hgvsp: ENSP00000378489.4:p.Arg206Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000457668
  ensembl transcript: ENST00000564596
  gene symbol: CYP1A1
  hgvsc: ENST00000564596.1:c.-168C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000456585
  ensembl transcript: ENST00000567032
  gene symbol: CYP1A1
  hgvsc: ENST00000567032.1:c.616C>A
  hgvsp: ENSP00000456585.1:p.Arg206Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000378488
  ensembl transcript: ENST00000395048
  gene symbol: CYP1A1
  hgvsc: ENST00000395048.2:c.616C>A
  hgvsp: ENSP00000378488.2:p.Arg206Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000369050
  ensembl transcript: ENST00000379727
  gene symbol: CYP1A1
  hgvsc: ENST00000379727.3:c.616C>A
  hgvsp: ENSP00000369050.3:p.Arg206Ser
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455846
  ensembl transcript: ENST00000566503
  gene symbol: CYP1A1
  hgvsc: ENST00000566503.1:c.-168C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455340
  ensembl transcript: ENST00000562201
  gene symbol: CYP1A1
  hgvsc: ENST00000562201.1:c.563+53C>A
  variant of: http://identifiers.org/hgnc/2595
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140465
  ensembl protein: ENSP00000455051
  ensembl transcript: ENST00000569630
  gene symbol: CYP1A1
  hgvsc: ENST00000569630.1:c.563+53C>A
  variant of: http://identifiers.org/hgnc/2595
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg206Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34704
bin: 9.75e1
variant carriers: 150

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.777393708952644e-4
allele num: 11572
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 132
allele frequency: 1.981446455912816e-3
allele num: 66618
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.660322108345535e-4
allele num: 16392
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 2.806211e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

GenotypeQuality
all individuals: 3280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34624
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

FS
type: SiteQuality
SIO_000300: 1.4899e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: -1.438e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 2.799813e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34626
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003273568189326e-5
allele num: 66594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQ
type: SiteQuality
SIO_000300: 5.857e1

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

QD
type: SiteQuality
SIO_000300: 1.022e1

FS
type: SiteQuality
SIO_000300: 8.53e-1

DP
type: SiteQuality
SIO_000300: 2.79916e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.824e0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34626
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226692836113837e-4
allele num: 16304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.277e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 6.2e1

DP
type: SiteQuality
SIO_000300: 2.797477e6

QD
type: SiteQuality
SIO_000300: 1.29e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34628
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.405725626992241e-4
allele num: 66508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.792461e6

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.791771e6

MQRankSum
type: SiteQuality
SIO_000300: 9.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

FS
type: SiteQuality
SIO_000300: 4.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.788812e6

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 2.469e0

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

QD
type: SiteQuality
SIO_000300: 1.616e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 15
allele frequency: 1.448715472281244e-3
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.512279488066413e-4
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.354116514203178e-4
allele num: 66464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.221e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 2.789891e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 34621
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 3.591e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.059e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.079e0

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.766688e6

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.041200990756963e-5
allele num: 66212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15446
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.985e0

DP
type: SiteQuality
SIO_000300: 2.761598e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 1929
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variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511532996765319e-5
allele num: 66158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.511e0

DP
type: SiteQuality
SIO_000300: 2.752744e6

FS
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.114e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.112e1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
all individuals: 2098
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 3255
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.051437216338881e-5
allele num: 66100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.746738e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.51e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2185
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 463
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.938360147315371e-4
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15100
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.626e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.743211e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.065e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.057302077654612e-5
allele num: 66036
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.423e0

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 2.7361e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1061
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4040
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GenotypeQuality
all individuals: 279
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 763
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GenotypeQuality
all individuals: 1169
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.86732542404884e-5
allele num: 63554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.246e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3659
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.005025125628141e-4
allele num: 9950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.320371e6

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.477e0

QD
type: SiteQuality
SIO_000300: 2.893e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.542e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 550

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1414
bin: 7.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568037131119265e-5
allele num: 63774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.141709798322327e-3
allele num: 11206
num of homozygotes: 0

African
type: Population
allele count: 564
allele frequency: 5.664925672961028e-2
allele num: 9956
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.3286e6

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.552e1

GenotypeQuality
all individuals: 391
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565190170605729e-5
allele num: 63890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.723e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.614e1

MQ
type: SiteQuality
SIO_000300: 5.823e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 1.335649e6

GenotypeQuality
all individuals: 3981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 36220
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2200
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GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56289072268067e-5
allele num: 63984
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.172e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 9.84e0

DP
type: SiteQuality
SIO_000300: 1.358001e6

QD
type: SiteQuality
SIO_000300: 8.82e0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40130
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GenotypeQuality
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GenotypeQuality
all individuals: 1263
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variant carriers: 0

GenotypeQuality
all individuals: 1509
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GenotypeQuality
all individuals: 552
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.81057268722467e-5
allele num: 11350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.107713344521101e-5
allele num: 64356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 2.046e0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.607e0

QD
type: SiteQuality
SIO_000300: 1.164e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.396381e6

GenotypeQuality
all individuals: 598
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 892
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variant carriers: 0

GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 759
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GenotypeQuality
all individuals: 695
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 233
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 310
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.637071843699765e-5
allele num: 64696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12532
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.421472e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 5.015e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 599
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534919416730622e-5
allele num: 65150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.863e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.646e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

DP
type: SiteQuality
SIO_000300: 1.449477e6

GenotypeQuality
all individuals: 1634
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.334604664808566e-5
allele num: 13634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.747e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.255e0

VQSLOD
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.452876e6

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

QD
type: SiteQuality
SIO_000300: 9.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 706
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GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 1468
bin: 7.75e1
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GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735809755250825e-4
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.265e1

DP
type: SiteQuality
SIO_000300: 1.48811e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 1714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019141356198297e-5
allele num: 66244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

MQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 1.782e0

DP
type: SiteQuality
SIO_000300: 1.500607e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.384e1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.305e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

DP
type: SiteQuality
SIO_000300: 1.509336e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.759e0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
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variant carriers: 0

GenotypeQuality
all individuals: 6644
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

FS
type: SiteQuality
SIO_000300: 1.805e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.511369e6

QD
type: SiteQuality
SIO_000300: 9.65e0

VQSLOD
type: SiteQuality
SIO_000300: -7.792e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

GenotypeQuality
all individuals: 6677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 7.3e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.239e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.48e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

VQSLOD
type: SiteQuality
SIO_000300: -2.403e-1

DP
type: SiteQuality
SIO_000300: 1.513274e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1498
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variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6699
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.406e1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

FS
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.514531e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

GenotypeQuality
all individuals: 6701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.923816852635629e-4
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

FS
type: SiteQuality
SIO_000300: 4.244e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 1.514787e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.515012e6

GenotypeQuality
all individuals: 6726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.895e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.969e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

DP
type: SiteQuality
SIO_000300: 1.516393e6

GenotypeQuality
all individuals: 48717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6725
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

DP
type: SiteQuality
SIO_000300: 1.516513e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.752e0

FS
type: SiteQuality
SIO_000300: 1.073e0

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.451e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
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SIO_000300: 8.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.517478e6

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.38e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.602e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.072e1

MQRankSum
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SIO_000300: -5.956e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
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SIO_000300: -1.036e0

MQ
type: SiteQuality
SIO_000300: 5.062e1

DP
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SIO_000300: 1.517946e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.072e1

MQRankSum
type: SiteQuality
SIO_000300: -5.956e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.062e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

DP
type: SiteQuality
SIO_000300: 1.517946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.036e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

FS
type: SiteQuality
SIO_000300: 1.9479e1

QD
type: SiteQuality
SIO_000300: 8.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.843e-1

DP
type: SiteQuality
SIO_000300: 1.517882e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Other
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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MQ
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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East Asian
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African
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele frequency: 2.996973057212216e-5
allele num: 66734
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East Asian
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Other
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Latino
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

South Asian
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African
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
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SIO_000300: 1.369e1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

DP
type: SiteQuality
SIO_000300: 1.518751e6

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.518703e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
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ClippingRankSum
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SIO_000300: -3.58e-1

BaseQRankSum
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SIO_000300: -5.032e0

MQRankSum
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SIO_000300: 1.19e-1

ReadPosRankSum
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SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
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MQ
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SIO_000300: 5.955e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.655e0

MQRankSum
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SIO_000300: 1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

VQSLOD
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SIO_000300: 5.570000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e0

MQRankSum
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SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 4.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.457216940363008e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 1.519417e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.384e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 130
allele frequency: 1.947857356907402e-3
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 9
allele frequency: 7.778738115816768e-4
allele num: 11570
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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FS
type: SiteQuality
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11570
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele num: 10404
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Latino
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Other
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South Asian
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allele frequency: 9.084302325581395e-4
allele num: 16512
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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East Asian
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Latino
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South Asian
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allele frequency: 3.028100775193798e-4
allele num: 16512
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Latino
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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FS
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QD
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ReadPosRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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Other
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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DP
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MQRankSum
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FS
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ReadPosRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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African
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FS
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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African
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European (Non-Finnish)
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East Asian
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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FS
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MQ
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East Asian
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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Other
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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Latino
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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MQRankSum
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10404
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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Latino
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QD
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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FS
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VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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DP
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FS
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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DP
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.519215e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.072e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 2.264e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048846269103986e-4
allele num: 66740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.542e0

FS
type: SiteQuality
SIO_000300: 1.757e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.520113e6

QD
type: SiteQuality
SIO_000300: 1.319e1