12-27450821-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27450821
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27450821
    reference: chr 12
allele count: 2
allele frequency: 1.671709657466691e-5
allele num: 119638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.211+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-4249T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000434385
  gene symbol: STK38L
  hgvsc: ENST00000434385.2:n.226T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.134+34T>G
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24445
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

12-27453469-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27453469
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27453469
    reference: chr 12
allele count: 1
allele frequency: 9.295408068414203e-5
allele num: 10758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.135-18T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-1601T>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

12-27453470-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27453470
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27453468
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 10758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.135-16_135-15delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-1599_-22-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-1599_212-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-1599_135-1598delTG
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: CTG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

12-27453479-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27453479
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27453479
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 10758
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.135-8T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-1591T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-1591T>C
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: c.135-8T>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

12-27453511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27453511
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27453511
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 10762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-1559C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.159C>T
  hgvsp: ENST00000546286.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-1559C>T
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Asn53Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

12-27453535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27453535
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27453535
    reference: chr 12
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*11+1G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-1535G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
hgvs: c.*11+1G>A
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

12-27455020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455020
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455020
    reference: chr 12
allele count: 1
allele frequency: 8.598304414369486e-6
allele num: 116302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-50G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-50G>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-27455035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455035
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455035
    reference: chr 12
allele count: 1
allele frequency: 8.526748409761421e-6
allele num: 117278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-35G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-27455038-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455038
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455038
    reference: chr 12
allele count: 1
allele frequency: 8.491126772522713e-6
allele num: 117770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-32T>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/12-27455043-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455043
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455043
    reference: chr 12
allele count: 1
allele frequency: 8.411985396793351e-6
allele num: 118878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-27A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-27A>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

12-27455049-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455049
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455050
    reference: chr 12
allele count: 20
allele frequency: 1.707271268331825e-4
allele num: 117146
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-12dupT
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19031
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.25e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-27455049-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455049
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455048
    reference: chr 12
allele count: 12
allele frequency: 1.024362760999095e-4
allele num: 117146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-12delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-12delT
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19031
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.25e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: AT
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

12-27455062-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455062
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455062
    reference: chr 12
allele count: 2
allele frequency: 1.654478673769895e-5
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-22-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.212-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*12-8T>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.135-8T>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.135-8T>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-27455076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455076
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455076
    reference: chr 12
allele count: 8
allele frequency: 6.599679915524098e-5
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.141G>A
  hgvsp: ENST00000545470.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.141G>A
  hgvsp: ENST00000543246.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.141G>A
  hgvsp: ENST00000541191.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.218G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.141G>A
  hgvsp: ENST00000540996.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.141G>A
  hgvsp: ENST00000544367.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.8G>A
  hgvsp: ENST00000407753.2:c.8G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.141G>A
  hgvsp: ENST00000544969.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.141G>A
  hgvsp: ENST00000389032.3:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys47Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-27455090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455090
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455090
    reference: chr 12
allele count: 18
allele frequency: 1.483899688381065e-4
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.155C>T
  hgvsp: ENSP00000445898.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.155C>T
  hgvsp: ENSP00000443838.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.155C>T
  hgvsp: ENSP00000437856.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.155C>T
  hgvsp: ENSP00000373684.3:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.155C>T
  hgvsp: ENSP00000439457.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.155C>T
  hgvsp: ENSP00000442253.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.22C>T
  hgvsp: ENSP00000385174.2:p.Ala8Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.155C>T
  hgvsp: ENSP00000440279.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.232C>T
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala52Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

12-27455119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455119
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455119
    reference: chr 12
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.184G>A
  hgvsp: ENSP00000373684.3:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.184G>A
  hgvsp: ENSP00000437856.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*61G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.28G>A
  hgvsp: ENSP00000446386.1:p.Glu10Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.184G>A
  hgvsp: ENSP00000439457.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.261G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.51G>A
  hgvsp: ENSP00000385174.2:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.184G>A
  hgvsp: ENSP00000442253.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.184G>A
  hgvsp: ENSP00000440279.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.184G>A
  hgvsp: ENSP00000443838.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.184G>A
  hgvsp: ENSP00000445898.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu62Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

12-27455135-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455135
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455135
    reference: chr 12
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*5C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.277C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+14C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+14C>G
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-27455137-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455137
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455137
    reference: chr 12
allele count: 58
allele frequency: 4.780587517721144e-4
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.279A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*7A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+16A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+16A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

12-27455146-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455146
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455146
    reference: chr 12
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.288G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+25G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+25G>T
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18197
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-27455153-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455153
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455153
    reference: chr 12
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*23A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+32A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.295A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+32A>C
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

12-27455162-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455162
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455162
    reference: chr 12
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.304A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+41A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+41A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-27455167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455167
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455167
    reference: chr 12
allele count: 1064
allele frequency: 8.773231748544667e-3
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.309C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+46C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*37C>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+46C>G
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 18725
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 6
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

12-27455176-CATTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27455176
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27455172
    reference: chr 12
allele count: 3
allele frequency: 2.474879968321537e-5
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*47_*50delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000211455
  ensembl transcript: ENST00000539863
  gene symbol: STK38L
  hgvsc: ENST00000539863.1:n.319_322delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.186+56_186+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.186+56_186+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.186+56_186+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.186+56_186+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.53+56_53+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*63+56_*63+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.186+56_186+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.30+56_30+59delATTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.186+56_186+59delATTT
  variant of: http://identifiers.org/hgnc/17848
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CATTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-27461237-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461237
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461236
    reference: chr 12
allele count: 1
allele frequency: 8.814766496835499e-6
allele num: 113446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-806delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-806delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-31delA
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-31delA
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: TA
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-27461241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461241
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461241
    reference: chr 12
allele count: 1
allele frequency: 8.791672527781685e-6
allele num: 113744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-806A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-806A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-31A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-31A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

12-27461248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461248
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461248
    reference: chr 12
allele count: 5
allele frequency: 4.369254430423993e-5
allele num: 114436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-799G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-799G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-24G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-24G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10984
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

12-27461254-ATTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461254
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461251
    reference: chr 12
allele count: 2
allele frequency: 1.731451822353043e-5
allele num: 115510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-15_187-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-15_187-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-15_54-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-15_*64-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-790_187-788delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-15_187-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-15_*59-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-15_187-13delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-790_31-788delGTT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-15_187-13delGTT
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: ATTG
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

12-27461255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461255
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461255
    reference: chr 12
allele count: 610
allele frequency: 5.276725316171e-3
allele num: 115602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-792T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-792T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-17T>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2967
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 2
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS

12-27461256-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461256
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461255
    reference: chr 12
allele count: 1
allele frequency: 8.640503222907702e-6
allele num: 115734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-790delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-15delG
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-790delG
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: TG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

12-27461257-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461257
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461258
    reference: chr 12
allele count: 105
allele frequency: 9.697619003638916e-4
allele num: 108274
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-781dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-6dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-781dupT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-6dupT
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9444
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11012
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

12-27461257-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461257
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461256
    reference: chr 12
allele count: 50
allele frequency: 4.617913811256627e-4
allele num: 108274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-781delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-781delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-6delT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-6delT
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9444
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 2.5e0
  variant carriers: 10
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: GT
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

12-27461257-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461257
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461257
    reference: chr 12
allele count: 1
allele frequency: 9.235827622513254e-6
allele num: 108274
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15406
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10890
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 816
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9034
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7946
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

12-27461258-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461258
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461258
    reference: chr 12
allele count: 3
allele frequency: 2.732439522005246e-5
allele num: 109792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*59-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.187-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-789T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*64-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.187-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.187-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.187-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.187-14T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-789T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.54-14T>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-27461295-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461295
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461295
    reference: chr 12
allele count: 16
allele frequency: 1.320720453007115e-4
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.210C>A
  hgvsp: ENSP00000442253.1:p.His70Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.210C>A
  hgvsp: ENSP00000443838.1:p.His70Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.210C>A
  hgvsp: ENSP00000373684.3:p.His70Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-752C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.210C>A
  hgvsp: ENSP00000440279.1:p.His70Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.210C>A
  hgvsp: ENSP00000437856.1:p.His70Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-752C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.77C>A
  hgvsp: ENSP00000385174.2:p.His26Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*82C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*87C>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His70Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-27461295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461295
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461295
    reference: chr 12
allele count: 36
allele frequency: 2.97162101926601e-4
allele num: 121146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.210C>T
  hgvsp: ENST00000389032.3:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.77C>T
  hgvsp: ENST00000407753.2:c.77C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-752C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.210C>T
  hgvsp: ENST00000541191.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*82C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.210C>T
  hgvsp: ENST00000543246.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.210C>T
  hgvsp: ENST00000544969.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-752C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.210C>T
  hgvsp: ENST00000540996.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His70His
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

12-27461299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461299
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461299
    reference: chr 12
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.214C>T
  hgvsp: ENSP00000442253.1:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*91C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.214C>T
  hgvsp: ENSP00000440279.1:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-748C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.214C>T
  hgvsp: ENSP00000373684.3:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-748C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.81C>T
  hgvsp: ENSP00000385174.2:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.214C>T
  hgvsp: ENSP00000443838.1:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.214C>T
  hgvsp: ENSP00000437856.1:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*86C>T
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17774
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg72Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

12-27461300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461300
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461300
    reference: chr 12
allele count: 5
allele frequency: 4.12452774157359e-5
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.215G>A
  hgvsp: ENSP00000373684.3:p.Arg72His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*87G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-747G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.215G>A
  hgvsp: ENSP00000442253.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-747G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.215G>A
  hgvsp: ENSP00000440279.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.215G>A
  hgvsp: ENSP00000437856.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.82G>A
  hgvsp: ENSP00000385174.2:p.Arg28His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.215G>A
  hgvsp: ENSP00000443838.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg72His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

12-27461321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461321
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461321
    reference: chr 12
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-726G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.236G>A
  hgvsp: ENSP00000440279.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*113G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.236G>A
  hgvsp: ENSP00000443838.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.103G>A
  hgvsp: ENSP00000385174.2:p.Arg35Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.236G>A
  hgvsp: ENSP00000437856.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.236G>A
  hgvsp: ENSP00000373684.3:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-726G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.236G>A
  hgvsp: ENSP00000442253.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6773
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg79Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

12-27461322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461322
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461322
    reference: chr 12
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.237G>C
  hgvsp: ENST00000543246.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-725G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*109G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.237G>C
  hgvsp: ENST00000544969.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.237G>C
  hgvsp: ENST00000389032.3:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.237G>C
  hgvsp: ENST00000540996.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*114G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.104G>C
  hgvsp: ENST00000407753.2:c.104G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.237G>C
  hgvsp: ENST00000541191.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-725G>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6776
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg79Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

12-27461325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461325
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461325
    reference: chr 12
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.240C>T
  hgvsp: ENST00000389032.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-722C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-722C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.240C>T
  hgvsp: ENST00000544969.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*117C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.240C>T
  hgvsp: ENST00000540996.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.107C>T
  hgvsp: ENST00000407753.2:c.107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*112C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.240C>T
  hgvsp: ENST00000541191.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.240C>T
  hgvsp: ENST00000543246.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu80Leu
num of homozygotes: 1
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-27461327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461327
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461327
    reference: chr 12
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.242A>G
  hgvsp: ENSP00000442253.1:p.Lys81Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.242A>G
  hgvsp: ENSP00000443838.1:p.Lys81Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-720A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-720A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.242A>G
  hgvsp: ENSP00000373684.3:p.Lys81Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.242A>G
  hgvsp: ENSP00000437856.1:p.Lys81Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.109A>G
  hgvsp: ENSP00000385174.2:p.Lys37Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.242A>G
  hgvsp: ENSP00000440279.1:p.Lys81Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*114A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*119A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys81Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

12-27461347-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461347
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461347
    reference: chr 12
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.262G>T
  hgvsp: ENSP00000443838.1:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-700G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*139G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.262G>T
  hgvsp: ENSP00000440279.1:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*134G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-700G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.262G>T
  hgvsp: ENSP00000437856.1:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.129G>T
  hgvsp: ENSP00000385174.2:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.262G>T
  hgvsp: ENSP00000442253.1:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.262G>T
  hgvsp: ENSP00000373684.3:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp88Tyr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

12-27461358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461358
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461358
    reference: chr 12
allele count: 8
allele frequency: 6.598046978094485e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.273G>A
  hgvsp: ENST00000540996.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.140G>A
  hgvsp: ENST00000407753.2:c.140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.273G>A
  hgvsp: ENST00000389032.3:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.273G>A
  hgvsp: ENST00000544969.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-689G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*150G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.273G>A
  hgvsp: ENST00000541191.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.273G>A
  hgvsp: ENST00000543246.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-689G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu91Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

12-27461364-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461364
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461364
    reference: chr 12
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.146G>T
  hgvsp: ENST00000407753.2:c.146G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.279G>T
  hgvsp: ENST00000541191.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*151G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-683G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443838
  ensembl transcript: ENST00000540996
  gene symbol: STK38L
  hgvsc: ENST00000540996.1:c.279G>T
  hgvsp: ENST00000540996.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*156G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.279G>T
  hgvsp: ENST00000544969.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.279G>T
  hgvsp: ENST00000543246.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-683G>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.279G>T
  hgvsp: ENST00000389032.3:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu93Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

12-27461374-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461374
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461374
    reference: chr 12
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.289G>C
  hgvsp: ENSP00000440279.1:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*166G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.289G>C
  hgvsp: ENSP00000373684.3:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-673G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-673G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.289G>C
  hgvsp: ENSP00000442253.1:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*161G>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.156G>C
  hgvsp: ENSP00000385174.2:p.Gly53Arg
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.289G>C
  hgvsp: ENSP00000437856.1:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17776
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly97Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

12-27461378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461378
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461378
    reference: chr 12
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.293G>A
  hgvsp: ENSP00000442253.1:p.Arg98Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-669G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.293G>A
  hgvsp: ENSP00000373684.3:p.Arg98Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.293G>A
  hgvsp: ENSP00000440279.1:p.Arg98Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.160G>A
  hgvsp: ENSP00000385174.2:p.Arg54Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.293G>A
  hgvsp: ENSP00000437856.1:p.Arg98Lys
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-669G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*170G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg98Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

12-27461397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461397
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461397
    reference: chr 12
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.309+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*186+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.309+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.309+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.176+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-650G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.309+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*181+3G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-650G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.309+3G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

12-27461400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461400
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461400
    reference: chr 12
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-647C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.309+6C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*186+6C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.309+6C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-647C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.309+6C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*181+6C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.176+6C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.309+6C>T
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
hgvs: c.309+6C>T
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

12-27461420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461420
    reference: chr 12
allele count: 1
allele frequency: 8.371002846140968e-6
allele num: 119460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.309+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*186+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.309+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.309+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.309+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-627C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.176+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*181+26C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-627C>T
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-27461430-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461430
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461430
    reference: chr 12
allele count: 1
allele frequency: 8.430139434506248e-6
allele num: 118622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*181+36T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-617T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.176+36T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*186+36T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-617T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.309+36T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.309+36T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.309+36T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.309+36T>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6249
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

12-27461431-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461431
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461431
    reference: chr 12
allele count: 1
allele frequency: 8.431418839162254e-6
allele num: 118604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.176+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.309+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*181+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*186+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.309+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.309+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.309+37A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-616A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-616A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

12-27461433-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27461433
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27461433
    reference: chr 12
allele count: 5
allele frequency: 4.235206423961104e-5
allele num: 118058
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.309+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*186+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-614A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.309+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.309+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.176+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*181+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.309+39A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-614A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

12-27462001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462001
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462001
    reference: chr 12
allele count: 1
allele frequency: 8.574123295892996e-6
allele num: 116630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-46A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-46A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11440
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

12-27462007-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462007
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462007
    reference: chr 12
allele count: 2
allele frequency: 1.711537474112996e-5
allele num: 116854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-40A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-40A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18892
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

12-27462007-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462007
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462007
    reference: chr 12
allele count: 1
allele frequency: 8.557687370564979e-6
allele num: 116854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-40A>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-40A>T
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

12-27462008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462008
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462008
    reference: chr 12
allele count: 1
allele frequency: 8.559152301556053e-6
allele num: 116834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-39G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-39G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-27462015-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462015
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462015
    reference: chr 12
allele count: 1
allele frequency: 8.523986498005388e-6
allele num: 117316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-32C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-32C>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-27462024-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462024
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462022
    reference: chr 12
allele count: 2
allele frequency: 1.687393483286368e-5
allele num: 118526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-18_310-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-18_*182-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-18_*187-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-18_310-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-18_310-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-18_187-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-18_177-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-18_31-17delAT
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-18_310-17delAT
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4720
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AAT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

12-27462027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462027
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462027
    reference: chr 12
allele count: 2
allele frequency: 1.681067814275628e-5
allele num: 118972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-20A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-20A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7575
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-27462029-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462029
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462029
    reference: chr 12
allele count: 1
allele frequency: 8.387010198604401e-6
allele num: 119232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-18A>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-18A>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

12-27462030-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462030
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462030
    reference: chr 12
allele count: 1
allele frequency: 8.374227477515199e-6
allele num: 119414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-17T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-17T>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-27462044-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462044
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462044
    reference: chr 12
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.31-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*182-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.177-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.310-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*187-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.310-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.310-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.310-3T>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.187-3T>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28430
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15082
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.25e1
  variant carriers: 0
hgvs: c.310-3T>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-27462050-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462050
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462050
    reference: chr 12
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*190C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.313C>A
  hgvsp: ENST00000389032.3:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.34C>A
  hgvsp: ENST00000539577.1:c.34C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.180C>A
  hgvsp: ENST00000407753.2:c.180C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.313C>A
  hgvsp: ENST00000543246.1:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*185C>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.190C>A
  hgvsp: ENST00000545470.1:c.190C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.313C>A
  hgvsp: ENST00000541191.1:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.313C>A
  hgvsp: ENST00000544969.1:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg105Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

12-27462050-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462050
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462050
    reference: chr 12
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.313C>T
  hgvsp: ENSP00000440279.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.34C>T
  hgvsp: ENSP00000446386.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*185C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.313C>T
  hgvsp: ENSP00000437856.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.190C>T
  hgvsp: ENSP00000439457.1:p.Arg64Trp
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*190C>T
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.180C>T
  hgvsp: ENSP00000385174.2:p.Arg61Trp
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.313C>T
  hgvsp: ENSP00000373684.3:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.313C>T
  hgvsp: ENSP00000442253.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg105Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-27462051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462051
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462051
    reference: chr 12
allele count: 2
allele frequency: 1.654287084980728e-5
allele num: 120898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.35G>A
  hgvsp: ENSP00000446386.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*186G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.314G>A
  hgvsp: ENSP00000442253.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.191G>A
  hgvsp: ENSP00000439457.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.314G>A
  hgvsp: ENSP00000440279.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.181G>A
  hgvsp: ENSP00000385174.2:p.Arg61Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.314G>A
  hgvsp: ENSP00000373684.3:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.314G>A
  hgvsp: ENSP00000437856.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg105Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-27462052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462052
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462052
    reference: chr 12
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.182G>A
  hgvsp: ENST00000407753.2:c.182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.192G>A
  hgvsp: ENST00000545470.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.315G>A
  hgvsp: ENST00000541191.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.36G>A
  hgvsp: ENST00000539577.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.315G>A
  hgvsp: ENST00000544969.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.315G>A
  hgvsp: ENST00000543246.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*192G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.315G>A
  hgvsp: ENST00000389032.3:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg105Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP

12-27462080-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462080
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462080
    reference: chr 12
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.210A>G
  hgvsp: ENSP00000385174.2:p.Ile71Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*220A>G
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.343A>G
  hgvsp: ENSP00000442253.1:p.Ile115Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.343A>G
  hgvsp: ENSP00000437856.1:p.Ile115Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.64A>G
  hgvsp: ENSP00000446386.1:p.Ile22Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.343A>G
  hgvsp: ENSP00000373684.3:p.Ile115Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.220A>G
  hgvsp: ENSP00000439457.1:p.Ile74Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.343A>G
  hgvsp: ENSP00000440279.1:p.Ile115Val
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*215A>G
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile115Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

12-27462083-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462083
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462083
    reference: chr 12
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.67T>C
  hgvsp: ENSP00000446386.1:p.Tyr23His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.346T>C
  hgvsp: ENSP00000373684.3:p.Tyr116His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.213T>C
  hgvsp: ENSP00000385174.2:p.Tyr72His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.346T>C
  hgvsp: ENSP00000437856.1:p.Tyr116His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.346T>C
  hgvsp: ENSP00000440279.1:p.Tyr116His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.346T>C
  hgvsp: ENSP00000442253.1:p.Tyr116His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.223T>C
  hgvsp: ENSP00000439457.1:p.Tyr75His
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*218T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*223T>C
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr116His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

12-27462098-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27462098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 27462098
    reference: chr 12
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000385174
  ensembl transcript: ENST00000407753
  gene symbol: STK38L
  hgvsc: ENST00000407753.2:c.228T>C
  hgvsp: ENST00000407753.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000443456
  ensembl transcript: ENST00000546286
  gene symbol: STK38L
  hgvsc: ENST00000546286.1:c.*238T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000439457
  ensembl transcript: ENST00000545470
  gene symbol: STK38L
  hgvsc: ENST00000545470.1:c.238T>C
  hgvsp: ENST00000545470.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000440279
  ensembl transcript: ENST00000544969
  gene symbol: STK38L
  hgvsc: ENST00000544969.1:c.361T>C
  hgvsp: ENST00000544969.1:c.361T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000373684
  ensembl transcript: ENST00000389032
  gene symbol: STK38L
  hgvsc: ENST00000389032.3:c.361T>C
  hgvsp: ENST00000389032.3:c.361T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000445898
  ensembl transcript: ENST00000544367
  gene symbol: STK38L
  hgvsc: ENST00000544367.1:c.*233T>C
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000446386
  ensembl transcript: ENST00000539577
  gene symbol: STK38L
  hgvsc: ENST00000539577.1:c.82T>C
  hgvsp: ENST00000539577.1:c.82T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000442253
  ensembl transcript: ENST00000543246
  gene symbol: STK38L
  hgvsc: ENST00000543246.1:c.361T>C
  hgvsp: ENST00000543246.1:c.361T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000211455
  ensembl protein: ENSP00000437856
  ensembl transcript: ENST00000541191
  gene symbol: STK38L
  hgvsc: ENST00000541191.1:c.361T>C
  hgvsp: ENST00000541191.1:c.361T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17848
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu121Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T

GenotypeQuality
all individuals: 22703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11425
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.238236750866766e-4
allele num: 16152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.806651e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.107e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 6.94e0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.0304e5

FS
type: SiteQuality
SIO_000300: 1.297e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.836e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.218e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.594e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.24e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 2.146e1

DP
type: SiteQuality
SIO_000300: 2.03104e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.0325e5

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.03713e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.84e-2

DP
type: SiteQuality
SIO_000300: 2.03991e5

VQSLOD
type: SiteQuality
SIO_000300: -3.167e0

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.386e0

QD
type: SiteQuality
SIO_000300: 7.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.997e0

FS
type: SiteQuality
SIO_000300: 2.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.823e1

GenotypeQuality
all individuals: 2478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56897200953935e-5
allele num: 63736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.9e-3

DP
type: SiteQuality
SIO_000300: 1.776048e6

MQ
type: SiteQuality
SIO_000300: 6.018e1

MQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
all individuals: 4981
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12779
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 536
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032631144155308e-4
allele num: 9684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.895e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

VQSLOD
type: SiteQuality
SIO_000300: -5.188e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 2.209e0

QD
type: SiteQuality
SIO_000300: 7.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.854984e6

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12805
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546646869586736e-5
allele num: 64656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

DP
type: SiteQuality
SIO_000300: 1.874871e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 2.148e0

QD
type: SiteQuality
SIO_000300: 1.499e1

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
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GenotypeQuality
all individuals: 19472
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 3670
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 2291
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variant carriers: 0

GenotypeQuality
all individuals: 12817
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528864970645792e-5
allele num: 65408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.677e1

DP
type: SiteQuality
SIO_000300: 1.899982e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.817e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 9.127000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

GenotypeQuality
all individuals: 2981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 321
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 608
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 8

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.5e0
variant carriers: 4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16980
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 11
allele frequency: 6.96731694958196e-4
allele num: 15788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024380249948781e-4
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.083222431989106e-4
allele num: 64622
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 2.591e0

VQSLOD
type: SiteQuality
SIO_000300: -8.256e-1

DP
type: SiteQuality
SIO_000300: 2.010959e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeQuality
all individuals: 6646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 12498
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1035
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 581
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 4196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
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variant carriers: 1

GenotypeQuality
all individuals: 3406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.547460617127294e-4
allele num: 64622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.333924499619965e-5
allele num: 15788
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.591e0

VQSLOD
type: SiteQuality
SIO_000300: -8.256e-1

DP
type: SiteQuality
SIO_000300: 2.010959e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

GenotypeQuality
all individuals: 3466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 3810
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GenotypeQuality
all individuals: 18171
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 14973
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variant carriers: 2

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 7322
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 4717
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007157033740302e-5
allele num: 66508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.279e1

DP
type: SiteQuality
SIO_000300: 2.035378e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.072e0

FS
type: SiteQuality
SIO_000300: 3.124e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.979e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4734
bin: 8.25e1
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GenotypeQuality
all individuals: 7348
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3826
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 18333
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GenotypeQuality
all individuals: 14989
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.775067750677507e-4
allele num: 10332
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.362e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.977e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.039998e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeDepth
all individuals: 1992
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
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GenotypeQuality
all individuals: 18373
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 3467
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 4734
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3825
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GenotypeQuality
all individuals: 7352
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 15000
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 17
allele frequency: 1.63776493256262e-3
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.193e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.431e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

FS
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

DP
type: SiteQuality
SIO_000300: 2.042416e6

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-1

ReadPosRankSum
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MQRankSum
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FS
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ClippingRankSum
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SIO_000300: -1.111e0

VQSLOD
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InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

DP
type: SiteQuality
SIO_000300: 2.042199e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.041697e6

ClippingRankSum
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SIO_000300: 1.83e0

QD
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FS
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.456e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.568e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 58

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 54
allele frequency: 5.194305502116198e-3
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 2.047476e6

VQSLOD
type: SiteQuality
SIO_000300: 6.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
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SIO_000300: -1.36e0

VQSLOD
type: SiteQuality
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DP
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QD
type: SiteQuality
SIO_000300: 1.903e1

InbreedingCoeff
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SIO_000300: 1.306e-1

BaseQRankSum
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SIO_000300: -2.046e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
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DP
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

InbreedingCoeff
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FS
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SIO_000300: 3.551e0

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: -2.947e-1

InbreedingCoeff
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QD
type: SiteQuality
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MQ
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DP
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.53e0

GenotypeQuality
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variant carriers: 1058

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 32
allele frequency: 3.080477474008471e-3
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 70
allele frequency: 6.045949214026602e-3
allele num: 11578
num of homozygotes: 2

South Asian
type: Population
allele count: 208
allele frequency: 1.262135922330097e-2
allele num: 16480
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058361052313275e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.518763796909493e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 740
allele frequency: 1.110144318761439e-2
allele num: 66658
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

InbreedingCoeff
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QD
type: SiteQuality
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MQ
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FS
type: SiteQuality
SIO_000300: 2.211e0

VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 3418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215214485356665e-4
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.67e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 5.279e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.485e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

DP
type: SiteQuality
SIO_000300: 2.093754e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11095
bin: 6.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4253
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variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571338780641106e-5
allele num: 63640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13274
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.975588e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

QD
type: SiteQuality
SIO_000300: 8.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 472
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.190759704691593e-4
allele num: 8398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 1.986295e6

QD
type: SiteQuality
SIO_000300: 1.232e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 2.494e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1263
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variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.623294858342078e-4
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64050
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068604402650139e-4
allele num: 9358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 2.012078e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

GenotypeQuality
all individuals: 2185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
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variant carriers: 0

GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 177
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3137
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549762886278399e-5
allele num: 64526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14154
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.807e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

FS
type: SiteQuality
SIO_000300: 2.148e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 2.034334e6

MQ
type: SiteQuality
SIO_000300: 5.778e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 720
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 605

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 8
allele frequency: 9.111617312072893e-3
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Latino
type: Population
allele count: 48
allele frequency: 4.189212777098971e-3
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 136
allele frequency: 2.063732928679818e-2
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 99
allele frequency: 6.969867642917488e-3
allele num: 14204
num of homozygotes: 2

African
type: Population
allele count: 3
allele frequency: 3.167898627243928e-4
allele num: 9470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 316
allele frequency: 4.894671623296158e-3
allele num: 64560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.61e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 2.047298e6

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 481
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.00770847932726e-5
allele num: 14270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 2.04793e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.161e1

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4759
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GenotypeQuality
all individuals: 2625
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 3
allele frequency: 3.320788133717069e-4
allele num: 9034
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.033979360684622e-4
allele num: 7946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 64
allele frequency: 1.053324555628703e-3
allele num: 60760
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 2.754820936639118e-4
allele num: 10890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.566906925728612e-4
allele num: 6382
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 2.410412984091274e-3
allele num: 12446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.869e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 2.204289e6

GenotypeQuality
all individuals: 2537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 4.25e1
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GenotypeQuality
all individuals: 735
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 11012
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3250
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GenotypeQuality
all individuals: 2625
bin: 7.25e1
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GenotypeQuality
all individuals: 1008
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 832
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 15406
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1048
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1314
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1215
bin: 3.75e1
variant carriers: 4

Latino
type: Population
allele count: 6
allele frequency: 5.509641873278236e-4
allele num: 10890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.962364401151207e-4
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.017354973485457e-4
allele num: 12446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.772876892692561e-4
allele num: 60760
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.258494840171155e-4
allele num: 7946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 1.869e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

DP
type: SiteQuality
SIO_000300: 2.204289e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.645819618169848e-5
allele num: 60760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12446
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.204289e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 1.869e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
all individuals: 3673
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15486
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2040
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.813236627379873e-4
allele num: 11030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.839448102853559e-5
allele num: 12756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

DP
type: SiteQuality
SIO_000300: 2.188801e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

QD
type: SiteQuality
SIO_000300: 1.387e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.009e-1

FS
type: SiteQuality
SIO_000300: 7.928e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17793
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.296232284825441e-3
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.504e0

DP
type: SiteQuality
SIO_000300: 2.243446e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.349e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17793
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 3423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007449237053947e-5
allele num: 66584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.519018106695832e-3
allele num: 16458
num of homozygotes: 1

Latino
type: Population
allele count: 6
allele frequency: 5.184929139301763e-4
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

QD
type: SiteQuality
SIO_000300: 1.349e1

DP
type: SiteQuality
SIO_000300: 2.243446e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 1.504e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213886865744113e-4
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 9.58e0

FS
type: SiteQuality
SIO_000300: 5.38e0

DP
type: SiteQuality
SIO_000300: 2.242182e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
all individuals: 17773
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.242869e6

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.964e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.54e-1

QD
type: SiteQuality
SIO_000300: 1.104e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

FS
type: SiteQuality
SIO_000300: 2.014e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.154e0

DP
type: SiteQuality
SIO_000300: 2.243422e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeQuality
all individuals: 3910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17772
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2281
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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Latino
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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VQSLOD
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DP
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MQ
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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European (Finnish)
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Other
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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DP
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 6.739842095128057e-4
allele num: 10386
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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Other
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FS
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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South Asian
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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MQRankSum
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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DP
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MQ
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QD
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele num: 10366
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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FS
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VQSLOD
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DP
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.510847887834653e-5
allele num: 66188
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.517312536036173e-5
allele num: 65906
num of homozygotes: 0

MQ
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele num: 65876
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Other
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South Asian
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African
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European (Finnish)
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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Other
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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Latino
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South Asian
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East Asian
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MQ
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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allele frequency: 8.741258741258741e-5
allele num: 11440
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64314
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e0

FS
type: SiteQuality
SIO_000300: 1.665e0

QD
type: SiteQuality
SIO_000300: 1.287e1

DP
type: SiteQuality
SIO_000300: 1.604739e6

InbreedingCoeff
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SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.315e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

BaseQRankSum
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SIO_000300: -2.355e0

MQRankSum
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SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.6e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.651291e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.747e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65282
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 1.588e0

QD
type: SiteQuality
SIO_000300: 1.992e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.697915e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

MQ
type: SiteQuality
SIO_000300: 6.127e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1979
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052969012364525e-5
allele num: 65510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 1.549e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

QD
type: SiteQuality
SIO_000300: 1.311e1

DP
type: SiteQuality
SIO_000300: 1.709533e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523136442562525e-5
allele num: 65654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.944e0

DP
type: SiteQuality
SIO_000300: 1.715004e6

VQSLOD
type: SiteQuality
SIO_000300: -1.802e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002004008016032e-4
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 1.259e0

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.718006e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.74134e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 2.155e0

VQSLOD
type: SiteQuality
SIO_000300: -2.803e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 9.65e0

DP
type: SiteQuality
SIO_000300: 1.744905e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7940
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.898e1

DP
type: SiteQuality
SIO_000300: 1.744905e6

VQSLOD
type: SiteQuality
SIO_000300: -2.803e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

FS
type: SiteQuality
SIO_000300: 2.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.745076e6

QD
type: SiteQuality
SIO_000300: 1.337e1

FS
type: SiteQuality
SIO_000300: 2.007e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50407604608489e-5
allele num: 66486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.072e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 1.74512e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.905e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.171e1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

DP
type: SiteQuality
SIO_000300: 1.745975e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0