15-74912336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912336
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912336
    reference: chr 15
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.597-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.188-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-414-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.197-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.241C>T
  hgvsp: ENSP00000455762.1:p.Pro81Ser
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.216-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.180-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.256-14C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.153-14C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro81Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-74912337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912337
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912337
    reference: chr 15
allele count: 3
allele frequency: 2.48406061107891e-5
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-414-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.256-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.242C>T
  hgvsp: ENSP00000455762.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.216-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.180-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.197-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.188-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.597-13C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.153-13C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro81Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-74912340-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912340
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912340
    reference: chr 15
allele count: 1
allele frequency: 8.276227364518158e-6
allele num: 120828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.197-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.188-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.180-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.245C>G
  hgvsp: ENSP00000455762.1:p.Pro82Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.597-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.256-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-414-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.216-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.153-10C>G
  variant of: http://identifiers.org/hgnc/2071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro82Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-74912353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912353
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912353
    reference: chr 15
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.156T>C
  hgvsp: ENST00000566126.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.219T>C
  hgvsp: ENST00000569063.1:c.219T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.200T>C
  hgvsp: ENST00000568488.1:c.200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.156T>C
  hgvsp: ENST00000348245.3:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.183T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.259T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.258T>C
  hgvsp: ENST00000568139.1:c.258T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.156T>C
  hgvsp: ENST00000483723.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.156T>C
  hgvsp: ENST00000562670.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.156T>C
  hgvsp: ENST00000352989.5:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.156T>C
  hgvsp: ENST00000564096.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.156T>C
  hgvsp: ENST00000562389.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.156T>C
  hgvsp: ENST00000345005.4:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-411T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.600T>C
  hgvsp: ENST00000395066.3:c.600T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.191T>C
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His200His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

15-74912357-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912357
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912357
    reference: chr 15
allele count: 7
allele frequency: 5.782352260899734e-5
allele num: 121058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.187C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.204C>G
  hgvsp: ENSP00000457936.1:p.Arg69Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.160C>G
  hgvsp: ENSP00000455905.1:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.262C>G
  hgvsp: ENSP00000455762.1:p.Arg88Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.160C>G
  hgvsp: ENSP00000323106.8:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.195C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.160C>G
  hgvsp: ENSP00000344112.4:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.223C>G
  hgvsp: ENSP00000456278.1:p.Arg75Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.263C>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.160C>G
  hgvsp: ENSP00000431825.1:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.160C>G
  hgvsp: ENSP00000456399.1:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.160C>G
  hgvsp: ENSP00000321136.6:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.160C>G
  hgvsp: ENSP00000457696.1:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.604C>G
  hgvsp: ENSP00000378505.3:p.Arg202Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.160C>G
  hgvsp: ENSP00000458099.1:p.Arg54Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-407C>G
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg202Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

15-74912357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912357
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912357
    reference: chr 15
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.223C>T
  hgvsp: ENSP00000456278.1:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.160C>T
  hgvsp: ENSP00000323106.8:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.187C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.160C>T
  hgvsp: ENSP00000456399.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.204C>T
  hgvsp: ENSP00000457936.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.160C>T
  hgvsp: ENSP00000457696.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.160C>T
  hgvsp: ENSP00000458099.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.160C>T
  hgvsp: ENSP00000455905.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.160C>T
  hgvsp: ENSP00000344112.4:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.604C>T
  hgvsp: ENSP00000378505.3:p.Arg202Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.160C>T
  hgvsp: ENSP00000321136.6:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.262C>T
  hgvsp: ENSP00000455762.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-407C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.263C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.160C>T
  hgvsp: ENSP00000431825.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.195C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202Cys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

15-74912358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912358
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912358
    reference: chr 15
allele count: 2
allele frequency: 1.651991475723985e-5
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.161G>A
  hgvsp: ENSP00000344112.4:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.161G>A
  hgvsp: ENSP00000458099.1:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.188G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-406G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.161G>A
  hgvsp: ENSP00000456399.1:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.205G>A
  hgvsp: ENSP00000457936.1:p.Arg69His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.196G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.264G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.263G>A
  hgvsp: ENSP00000455762.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.161G>A
  hgvsp: ENSP00000457696.1:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.161G>A
  hgvsp: ENSP00000321136.6:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.161G>A
  hgvsp: ENSP00000323106.8:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.161G>A
  hgvsp: ENSP00000455905.1:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.224G>A
  hgvsp: ENSP00000456278.1:p.Arg75His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.161G>A
  hgvsp: ENSP00000431825.1:p.Arg54His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.605G>A
  hgvsp: ENSP00000378505.3:p.Arg202His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-74912367-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912367
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912367
    reference: chr 15
allele count: 9
allele frequency: 7.428439367427118e-5
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.205A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.272A>G
  hgvsp: ENSP00000455762.1:p.Tyr91Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.170A>G
  hgvsp: ENSP00000321136.6:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.170A>G
  hgvsp: ENSP00000323106.8:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.614A>G
  hgvsp: ENSP00000378505.3:p.Tyr205Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.170A>G
  hgvsp: ENSP00000431825.1:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.170A>G
  hgvsp: ENSP00000458099.1:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.170A>G
  hgvsp: ENSP00000344112.4:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.214A>G
  hgvsp: ENSP00000457936.1:p.Tyr72Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.170A>G
  hgvsp: ENSP00000455905.1:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.233A>G
  hgvsp: ENSP00000456278.1:p.Tyr78Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.170A>G
  hgvsp: ENSP00000457696.1:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.197A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-397A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.170A>G
  hgvsp: ENSP00000456399.1:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.273A>G
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr205Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

15-74912368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912368
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912368
    reference: chr 15
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.171C>T
  hgvsp: ENST00000562670.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.171C>T
  hgvsp: ENST00000352989.5:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.274C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.171C>T
  hgvsp: ENST00000566126.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.171C>T
  hgvsp: ENST00000562389.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.171C>T
  hgvsp: ENST00000564096.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.198C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.206C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.273C>T
  hgvsp: ENST00000568139.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.171C>T
  hgvsp: ENST00000345005.4:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.171C>T
  hgvsp: ENST00000348245.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-396C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.615C>T
  hgvsp: ENST00000395066.3:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.215C>T
  hgvsp: ENST00000568488.1:c.215C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.234C>T
  hgvsp: ENST00000569063.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.171C>T
  hgvsp: ENST00000483723.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr205Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-74912371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912371
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912371
    reference: chr 15
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.237G>A
  hgvsp: ENST00000569063.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.218G>A
  hgvsp: ENST00000568488.1:c.218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.276G>A
  hgvsp: ENST00000568139.1:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.174G>A
  hgvsp: ENST00000345005.4:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-393G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.174G>A
  hgvsp: ENST00000562670.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.174G>A
  hgvsp: ENST00000352989.5:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.277G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.174G>A
  hgvsp: ENST00000566126.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.201G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.174G>A
  hgvsp: ENST00000483723.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.209G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.174G>A
  hgvsp: ENST00000562389.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.174G>A
  hgvsp: ENST00000348245.3:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.618G>A
  hgvsp: ENST00000395066.3:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.174G>A
  hgvsp: ENST00000564096.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln206Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

15-74912381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912381
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912381
    reference: chr 15
allele count: 3
allele frequency: 2.475002475002475e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.184C>T
  hgvsp: ENSP00000456399.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-383C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.287C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.184C>T
  hgvsp: ENSP00000455905.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.211C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.184C>T
  hgvsp: ENSP00000431825.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.184C>T
  hgvsp: ENSP00000457696.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.228C>T
  hgvsp: ENSP00000457936.1:p.Arg77Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.286C>T
  hgvsp: ENSP00000455762.1:p.Arg96Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.184C>T
  hgvsp: ENSP00000321136.6:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.184C>T
  hgvsp: ENSP00000323106.8:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.184C>T
  hgvsp: ENSP00000344112.4:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.184C>T
  hgvsp: ENSP00000458099.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.247C>T
  hgvsp: ENSP00000456278.1:p.Arg83Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.219C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.628C>T
  hgvsp: ENSP00000378505.3:p.Arg210Trp
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg210Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

15-74912382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912382
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912382
    reference: chr 15
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.185G>A
  hgvsp: ENSP00000458099.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.248G>A
  hgvsp: ENSP00000456278.1:p.Arg83Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.185G>A
  hgvsp: ENSP00000457696.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.185G>A
  hgvsp: ENSP00000323106.8:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.185G>A
  hgvsp: ENSP00000455905.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.629G>A
  hgvsp: ENSP00000378505.3:p.Arg210Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.288G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.287G>A
  hgvsp: ENSP00000455762.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.185G>A
  hgvsp: ENSP00000321136.6:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.212G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.185G>A
  hgvsp: ENSP00000344112.4:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.229G>A
  hgvsp: ENSP00000457936.1:p.Arg77Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-382G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.220G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.185G>A
  hgvsp: ENSP00000456399.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.185G>A
  hgvsp: ENSP00000431825.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg210Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-74912386-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912386
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912386
    reference: chr 15
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.189G>C
  hgvsp: ENSP00000431825.1:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.233G>C
  hgvsp: ENSP00000457936.1:p.Glu78Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.292G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.189G>C
  hgvsp: ENSP00000456399.1:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.189G>C
  hgvsp: ENSP00000321136.6:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.291G>C
  hgvsp: ENSP00000455762.1:p.Glu97Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-378G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.189G>C
  hgvsp: ENSP00000344112.4:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.189G>C
  hgvsp: ENSP00000455905.1:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.216G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.189G>C
  hgvsp: ENSP00000457696.1:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.189G>C
  hgvsp: ENSP00000323106.8:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.252G>C
  hgvsp: ENSP00000456278.1:p.Glu84Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.224G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.633G>C
  hgvsp: ENSP00000378505.3:p.Glu211Asp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.189G>C
  hgvsp: ENSP00000458099.1:p.Glu63Asp
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu211Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

15-74912387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912387
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912387
    reference: chr 15
allele count: 8
allele frequency: 6.598046978094485e-5
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.190C>T
  hgvsp: ENSP00000457696.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.190C>T
  hgvsp: ENSP00000455905.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.190C>T
  hgvsp: ENSP00000456399.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.293C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.190C>T
  hgvsp: ENSP00000321136.6:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.190C>T
  hgvsp: ENSP00000431825.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-377C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.190C>T
  hgvsp: ENSP00000458099.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.292C>T
  hgvsp: ENSP00000455762.1:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.234C>T
  hgvsp: ENSP00000457936.1:p.Arg79Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.190C>T
  hgvsp: ENSP00000323106.8:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.217C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.225C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.253C>T
  hgvsp: ENSP00000456278.1:p.Arg85Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.634C>T
  hgvsp: ENSP00000378505.3:p.Arg212Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.190C>T
  hgvsp: ENSP00000344112.4:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg212Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-74912388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912388
    reference: chr 15
allele count: 24
allele frequency: 1.979316146271463e-4
allele num: 121254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.635G>A
  hgvsp: ENSP00000378505.3:p.Arg212His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.191G>A
  hgvsp: ENSP00000457696.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.191G>A
  hgvsp: ENSP00000321136.6:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.218G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.191G>A
  hgvsp: ENSP00000344112.4:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.191G>A
  hgvsp: ENSP00000323106.8:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.294G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.191G>A
  hgvsp: ENSP00000458099.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.191G>A
  hgvsp: ENSP00000455905.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.235G>A
  hgvsp: ENSP00000457936.1:p.Arg79His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.293G>A
  hgvsp: ENSP00000455762.1:p.Arg98His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-376G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.226G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.191G>A
  hgvsp: ENSP00000431825.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.191G>A
  hgvsp: ENSP00000456399.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.254G>A
  hgvsp: ENSP00000456278.1:p.Arg85His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212His
num of homozygotes: 1
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-74912388-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912388
    reference: chr 15
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-376G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.191G>T
  hgvsp: ENSP00000321136.6:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.226G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.254G>T
  hgvsp: ENSP00000456278.1:p.Arg85Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.235G>T
  hgvsp: ENSP00000457936.1:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.293G>T
  hgvsp: ENSP00000455762.1:p.Arg98Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.191G>T
  hgvsp: ENSP00000455905.1:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.191G>T
  hgvsp: ENSP00000323106.8:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.191G>T
  hgvsp: ENSP00000457696.1:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.191G>T
  hgvsp: ENSP00000431825.1:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.191G>T
  hgvsp: ENSP00000456399.1:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.191G>T
  hgvsp: ENSP00000344112.4:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.218G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.635G>T
  hgvsp: ENSP00000378505.3:p.Arg212Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.294G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.191G>T
  hgvsp: ENSP00000458099.1:p.Arg64Leu
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-74912389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912389
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912389
    reference: chr 15
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.219C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.636C>T
  hgvsp: ENST00000395066.3:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.192C>T
  hgvsp: ENST00000564096.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.192C>T
  hgvsp: ENST00000352989.5:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.294C>T
  hgvsp: ENST00000568139.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.295C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.192C>T
  hgvsp: ENST00000348245.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.192C>T
  hgvsp: ENST00000483723.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.192C>T
  hgvsp: ENST00000566126.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-375C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.192C>T
  hgvsp: ENST00000345005.4:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.192C>T
  hgvsp: ENST00000562670.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.192C>T
  hgvsp: ENST00000562389.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.227C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.255C>T
  hgvsp: ENST00000569063.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.236C>T
  hgvsp: ENST00000568488.1:c.236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

15-74912390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912390
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912390
    reference: chr 15
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.237C>T
  hgvsp: ENSP00000457936.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.256C>T
  hgvsp: ENSP00000456278.1:p.Arg86Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.193C>T
  hgvsp: ENSP00000431825.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.220C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.295C>T
  hgvsp: ENSP00000455762.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.228C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.193C>T
  hgvsp: ENSP00000457696.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.637C>T
  hgvsp: ENSP00000378505.3:p.Arg213Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.193C>T
  hgvsp: ENSP00000344112.4:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.193C>T
  hgvsp: ENSP00000323106.8:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.193C>T
  hgvsp: ENSP00000321136.6:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.193C>T
  hgvsp: ENSP00000456399.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-374C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.296C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.193C>T
  hgvsp: ENSP00000458099.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.193C>T
  hgvsp: ENSP00000455905.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg213Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-74912391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912391
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912391
    reference: chr 15
allele count: 2
allele frequency: 1.649103712132456e-5
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.194G>A
  hgvsp: ENSP00000321136.6:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.194G>A
  hgvsp: ENSP00000455905.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.229G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.194G>A
  hgvsp: ENSP00000458099.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.194G>A
  hgvsp: ENSP00000323106.8:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.296G>A
  hgvsp: ENSP00000455762.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.297G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.238G>A
  hgvsp: ENSP00000457936.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.194G>A
  hgvsp: ENSP00000344112.4:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.194G>A
  hgvsp: ENSP00000457696.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.638G>A
  hgvsp: ENSP00000378505.3:p.Arg213His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.221G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.194G>A
  hgvsp: ENSP00000431825.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.257G>A
  hgvsp: ENSP00000456278.1:p.Arg86His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.194G>A
  hgvsp: ENSP00000456399.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-373G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg213His
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-74912396-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912396
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912396
    reference: chr 15
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.199A>G
  hgvsp: ENSP00000457696.1:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.199A>G
  hgvsp: ENSP00000455905.1:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.301A>G
  hgvsp: ENSP00000455762.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.302A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-368A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.643A>G
  hgvsp: ENSP00000378505.3:p.Ser215Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.199A>G
  hgvsp: ENSP00000321136.6:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.226A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.199A>G
  hgvsp: ENSP00000323106.8:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.199A>G
  hgvsp: ENSP00000456399.1:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.199A>G
  hgvsp: ENSP00000344112.4:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.199A>G
  hgvsp: ENSP00000431825.1:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.243A>G
  hgvsp: ENSP00000457936.1:p.Ser82Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.234A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.199A>G
  hgvsp: ENSP00000458099.1:p.Ser67Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.262A>G
  hgvsp: ENSP00000456278.1:p.Ser88Gly
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser215Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-74912398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912398
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912398
    reference: chr 15
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.201C>T
  hgvsp: ENST00000345005.4:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.201C>T
  hgvsp: ENST00000352989.5:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.201C>T
  hgvsp: ENST00000562389.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.201C>T
  hgvsp: ENST00000564096.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.264C>T
  hgvsp: ENST00000569063.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.303C>T
  hgvsp: ENST00000568139.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.201C>T
  hgvsp: ENST00000566126.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-366C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.201C>T
  hgvsp: ENST00000483723.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.201C>T
  hgvsp: ENST00000348245.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.245C>T
  hgvsp: ENST00000568488.1:c.245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.645C>T
  hgvsp: ENST00000395066.3:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.304C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.236C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.201C>T
  hgvsp: ENST00000562670.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.228C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser215Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-74912402-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912402
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912402
    reference: chr 15
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.249A>G
  hgvsp: ENSP00000457936.1:p.Thr84Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.205A>G
  hgvsp: ENSP00000455905.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.268A>G
  hgvsp: ENSP00000456278.1:p.Thr90Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.205A>G
  hgvsp: ENSP00000431825.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.308A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.205A>G
  hgvsp: ENSP00000457696.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.307A>G
  hgvsp: ENSP00000455762.1:p.Thr103Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.649A>G
  hgvsp: ENSP00000378505.3:p.Thr217Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.205A>G
  hgvsp: ENSP00000458099.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.205A>G
  hgvsp: ENSP00000344112.4:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.205A>G
  hgvsp: ENSP00000323106.8:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-362A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.232A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.205A>G
  hgvsp: ENSP00000321136.6:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.240A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.205A>G
  hgvsp: ENSP00000456399.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr217Ala
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

15-74912403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912403
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912403
    reference: chr 15
allele count: 2
allele frequency: 1.648587160803192e-5
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.206C>T
  hgvsp: ENSP00000344112.4:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.308C>T
  hgvsp: ENSP00000455762.1:p.Thr103Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.309C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-361C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.269C>T
  hgvsp: ENSP00000456278.1:p.Thr90Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.233C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.206C>T
  hgvsp: ENSP00000457696.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.206C>T
  hgvsp: ENSP00000323106.8:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.206C>T
  hgvsp: ENSP00000455905.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.250C>T
  hgvsp: ENSP00000457936.1:p.Thr84Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.206C>T
  hgvsp: ENSP00000458099.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.650C>T
  hgvsp: ENSP00000378505.3:p.Thr217Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.206C>T
  hgvsp: ENSP00000321136.6:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.241C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.206C>T
  hgvsp: ENSP00000456399.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.206C>T
  hgvsp: ENSP00000431825.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr217Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-74912408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912408
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912408
    reference: chr 15
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.313C>T
  hgvsp: ENSP00000455762.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.211C>T
  hgvsp: ENSP00000455905.1:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.211C>T
  hgvsp: ENSP00000431825.1:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.238C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-356C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.314C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.246C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.211C>T
  hgvsp: ENSP00000344112.4:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.211C>T
  hgvsp: ENSP00000323106.8:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.211C>T
  hgvsp: ENSP00000321136.6:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.655C>T
  hgvsp: ENSP00000378505.3:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.211C>T
  hgvsp: ENSP00000457696.1:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.274C>T
  hgvsp: ENSP00000456278.1:p.Arg92Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.255C>T
  hgvsp: ENSP00000457936.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.211C>T
  hgvsp: ENSP00000458099.1:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.211C>T
  hgvsp: ENSP00000456399.1:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg219Trp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-74912409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912409
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912409
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-355G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.212G>A
  hgvsp: ENSP00000323106.8:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.212G>A
  hgvsp: ENSP00000455905.1:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.212G>A
  hgvsp: ENSP00000456399.1:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.212G>A
  hgvsp: ENSP00000321136.6:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.212G>A
  hgvsp: ENSP00000344112.4:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.212G>A
  hgvsp: ENSP00000458099.1:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.256G>A
  hgvsp: ENSP00000457936.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.247G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.656G>A
  hgvsp: ENSP00000378505.3:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.315G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.212G>A
  hgvsp: ENSP00000431825.1:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.314G>A
  hgvsp: ENSP00000455762.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.212G>A
  hgvsp: ENSP00000457696.1:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.275G>A
  hgvsp: ENSP00000456278.1:p.Arg92Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.239G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg219Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-74912410-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912410
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912410
    reference: chr 15
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.276G>T
  hgvsp: ENST00000569063.1:c.276G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.316G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.213G>T
  hgvsp: ENST00000345005.4:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.257G>T
  hgvsp: ENST00000568488.1:c.257G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.213G>T
  hgvsp: ENST00000352989.5:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.213G>T
  hgvsp: ENST00000562670.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.213G>T
  hgvsp: ENST00000483723.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.213G>T
  hgvsp: ENST00000348245.3:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.213G>T
  hgvsp: ENST00000566126.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.213G>T
  hgvsp: ENST00000564096.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.315G>T
  hgvsp: ENST00000568139.1:c.315G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.213G>T
  hgvsp: ENST00000562389.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.248G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.657G>T
  hgvsp: ENST00000395066.3:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-354G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.240G>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg219Arg
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

15-74912412-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912412
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912412
    reference: chr 15
allele count: 6
allele frequency: 4.94486475794887e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.318G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.215G>T
  hgvsp: ENSP00000457696.1:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-352G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.242G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.215G>T
  hgvsp: ENSP00000431825.1:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.215G>T
  hgvsp: ENSP00000455905.1:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.215G>T
  hgvsp: ENSP00000321136.6:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.215G>T
  hgvsp: ENSP00000344112.4:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.259G>T
  hgvsp: ENSP00000457936.1:p.Cys87Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.317G>T
  hgvsp: ENSP00000455762.1:p.Cys106Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.659G>T
  hgvsp: ENSP00000378505.3:p.Cys220Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.215G>T
  hgvsp: ENSP00000323106.8:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.215G>T
  hgvsp: ENSP00000458099.1:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.250G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.215G>T
  hgvsp: ENSP00000456399.1:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.278G>T
  hgvsp: ENSP00000456278.1:p.Cys93Phe
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys220Phe
num of homozygotes: 1
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-74912413-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912413
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912413
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.216T>C
  hgvsp: ENST00000345005.4:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.216T>C
  hgvsp: ENST00000348245.3:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.279T>C
  hgvsp: ENST00000569063.1:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.260T>C
  hgvsp: ENST00000568488.1:c.260T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.216T>C
  hgvsp: ENST00000564096.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.660T>C
  hgvsp: ENST00000395066.3:c.660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-351T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.216T>C
  hgvsp: ENST00000562670.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.216T>C
  hgvsp: ENST00000483723.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.243T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.318T>C
  hgvsp: ENST00000568139.1:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.216T>C
  hgvsp: ENST00000352989.5:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.319T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.216T>C
  hgvsp: ENST00000566126.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.216T>C
  hgvsp: ENST00000562389.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.251T>C
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys220Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

15-74912413-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912413
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912413
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.216T>G
  hgvsp: ENSP00000457696.1:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.216T>G
  hgvsp: ENSP00000323106.8:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.319T>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.216T>G
  hgvsp: ENSP00000321136.6:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.216T>G
  hgvsp: ENSP00000431825.1:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.216T>G
  hgvsp: ENSP00000458099.1:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.318T>G
  hgvsp: ENSP00000455762.1:p.Cys106Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.216T>G
  hgvsp: ENSP00000344112.4:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.243T>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.216T>G
  hgvsp: ENSP00000455905.1:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.260T>G
  hgvsp: ENSP00000457936.1:p.Cys87Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.216T>G
  hgvsp: ENSP00000456399.1:p.Cys72Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.279T>G
  hgvsp: ENSP00000456278.1:p.Cys93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-351T>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.251T>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.660T>G
  hgvsp: ENSP00000378505.3:p.Cys220Trp
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys220Trp
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-74912414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912414
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912414
    reference: chr 15
allele count: 4
allele frequency: 3.296522169111587e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.217G>A
  hgvsp: ENSP00000323106.8:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.217G>A
  hgvsp: ENSP00000321136.6:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.261G>A
  hgvsp: ENSP00000457936.1:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-350G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.217G>A
  hgvsp: ENSP00000457696.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.252G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.244G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.217G>A
  hgvsp: ENSP00000458099.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.217G>A
  hgvsp: ENSP00000344112.4:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.217G>A
  hgvsp: ENSP00000455905.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.319G>A
  hgvsp: ENSP00000455762.1:p.Glu107Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.280G>A
  hgvsp: ENSP00000456278.1:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.217G>A
  hgvsp: ENSP00000456399.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.661G>A
  hgvsp: ENSP00000378505.3:p.Glu221Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.217G>A
  hgvsp: ENSP00000431825.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.320G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu221Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-74912420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912420
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912420
    reference: chr 15
allele count: 7
allele frequency: 5.768438401318501e-5
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.267C>T
  hgvsp: ENSP00000457936.1:p.Arg90Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.223C>T
  hgvsp: ENSP00000323106.8:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.223C>T
  hgvsp: ENSP00000344112.4:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.223C>T
  hgvsp: ENSP00000456399.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.286C>T
  hgvsp: ENSP00000456278.1:p.Arg96Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.258C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.223C>T
  hgvsp: ENSP00000457696.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.667C>T
  hgvsp: ENSP00000378505.3:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.325C>T
  hgvsp: ENSP00000455762.1:p.Arg109Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.223C>T
  hgvsp: ENSP00000431825.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.223C>T
  hgvsp: ENSP00000458099.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-344C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.223C>T
  hgvsp: ENSP00000321136.6:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.326C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.250C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.223C>T
  hgvsp: ENSP00000455905.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg223Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-74912421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912421
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912421
    reference: chr 15
allele count: 2
allele frequency: 1.648179585647652e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.224G>A
  hgvsp: ENSP00000321136.6:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.224G>A
  hgvsp: ENSP00000457696.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-343G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.224G>A
  hgvsp: ENSP00000458099.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.224G>A
  hgvsp: ENSP00000455905.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.224G>A
  hgvsp: ENSP00000323106.8:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.668G>A
  hgvsp: ENSP00000378505.3:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.224G>A
  hgvsp: ENSP00000431825.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.224G>A
  hgvsp: ENSP00000344112.4:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.287G>A
  hgvsp: ENSP00000456278.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.326G>A
  hgvsp: ENSP00000455762.1:p.Arg109Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.259G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.268G>A
  hgvsp: ENSP00000457936.1:p.Arg90Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.224G>A
  hgvsp: ENSP00000456399.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.251G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.327G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg223Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-74912424-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912424
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912424
    reference: chr 15
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.329G>T
  hgvsp: ENSP00000455762.1:p.Ser110Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.227G>T
  hgvsp: ENSP00000455905.1:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.227G>T
  hgvsp: ENSP00000323106.8:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.330G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.290G>T
  hgvsp: ENSP00000456278.1:p.Ser97Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-340G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.227G>T
  hgvsp: ENSP00000344112.4:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.227G>T
  hgvsp: ENSP00000321136.6:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.671G>T
  hgvsp: ENSP00000378505.3:p.Ser224Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.227G>T
  hgvsp: ENSP00000457696.1:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.271G>T
  hgvsp: ENSP00000457936.1:p.Ser91Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.227G>T
  hgvsp: ENSP00000456399.1:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.227G>T
  hgvsp: ENSP00000458099.1:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.254G>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.227G>T
  hgvsp: ENSP00000431825.1:p.Ser76Ile
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.262G>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser224Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-74912438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912438
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912438
    reference: chr 15
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.241G>A
  hgvsp: ENSP00000323106.8:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.285G>A
  hgvsp: ENSP00000457936.1:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.241G>A
  hgvsp: ENSP00000321136.6:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.241G>A
  hgvsp: ENSP00000344112.4:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.241G>A
  hgvsp: ENSP00000458099.1:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.241G>A
  hgvsp: ENSP00000457696.1:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.344G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.685G>A
  hgvsp: ENSP00000378505.3:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.241G>A
  hgvsp: ENSP00000431825.1:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-326G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.304G>A
  hgvsp: ENSP00000456278.1:p.Glu102Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.241G>A
  hgvsp: ENSP00000455905.1:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.343G>A
  hgvsp: ENSP00000455762.1:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.241G>A
  hgvsp: ENSP00000456399.1:p.Glu81Lys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.268G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.276G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu229Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

15-74912438-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912438
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912438
    reference: chr 15
allele count: 5
allele frequency: 4.119905736556747e-5
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.276G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-326G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.241G>C
  hgvsp: ENSP00000455905.1:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.344G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.268G>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.241G>C
  hgvsp: ENSP00000431825.1:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.241G>C
  hgvsp: ENSP00000458099.1:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.685G>C
  hgvsp: ENSP00000378505.3:p.Glu229Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.241G>C
  hgvsp: ENSP00000344112.4:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.241G>C
  hgvsp: ENSP00000323106.8:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.285G>C
  hgvsp: ENSP00000457936.1:p.Glu96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.343G>C
  hgvsp: ENSP00000455762.1:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.241G>C
  hgvsp: ENSP00000457696.1:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.241G>C
  hgvsp: ENSP00000456399.1:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.241G>C
  hgvsp: ENSP00000321136.6:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.304G>C
  hgvsp: ENSP00000456278.1:p.Glu102Gln
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu229Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-74912441-GACT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912441
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912438
    reference: chr 15
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.249_251delCTA
  hgvsp: ENSP00000455905.1:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.276_278delCTA
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.249_251delCTA
  hgvsp: ENSP00000344112.4:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-318_-316delCTA
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.249_251delCTA
  hgvsp: ENSP00000321136.6:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.249_251delCTA
  hgvsp: ENSP00000457696.1:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.249_251delCTA
  hgvsp: ENSP00000323106.8:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.249_251delCTA
  hgvsp: ENSP00000456399.1:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.249_251delCTA
  hgvsp: ENSP00000431825.1:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.284_286delCTA
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.293_295delCTA
  hgvsp: ENSP00000457936.1:p.Tyr99del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.351_353delCTA
  hgvsp: ENSP00000455762.1:p.Tyr118del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.249_251delCTA
  hgvsp: ENSP00000458099.1:p.Tyr84del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.312_314delCTA
  hgvsp: ENSP00000456278.1:p.Tyr105del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.352_354delCTA
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.693_695delCTA
  hgvsp: ENSP00000378505.3:p.Tyr232del
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr232del
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: GACT
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

15-74912444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912444
    reference: chr 15
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.349T>C
  hgvsp: ENSP00000455762.1:p.Tyr117His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.247T>C
  hgvsp: ENSP00000344112.4:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.247T>C
  hgvsp: ENSP00000431825.1:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-320T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.691T>C
  hgvsp: ENSP00000378505.3:p.Tyr231His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.247T>C
  hgvsp: ENSP00000458099.1:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.247T>C
  hgvsp: ENSP00000456399.1:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.291T>C
  hgvsp: ENSP00000457936.1:p.Tyr98His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.310T>C
  hgvsp: ENSP00000456278.1:p.Tyr104His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.247T>C
  hgvsp: ENSP00000323106.8:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.247T>C
  hgvsp: ENSP00000457696.1:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.247T>C
  hgvsp: ENSP00000321136.6:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.282T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.274T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.350T>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.247T>C
  hgvsp: ENSP00000455905.1:p.Tyr83His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr231His
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-74912451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912451
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912451
    reference: chr 15
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.254G>A
  hgvsp: ENSP00000455905.1:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.254G>A
  hgvsp: ENSP00000431825.1:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.254G>A
  hgvsp: ENSP00000456399.1:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.698G>A
  hgvsp: ENSP00000378505.3:p.Gly233Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.357G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.254G>A
  hgvsp: ENSP00000458099.1:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.356G>A
  hgvsp: ENSP00000455762.1:p.Gly119Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.254G>A
  hgvsp: ENSP00000344112.4:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-313G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.298G>A
  hgvsp: ENSP00000457936.1:p.Gly100Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.254G>A
  hgvsp: ENSP00000321136.6:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.317G>A
  hgvsp: ENSP00000456278.1:p.Gly106Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.254G>A
  hgvsp: ENSP00000323106.8:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.281G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.254G>A
  hgvsp: ENSP00000457696.1:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.289G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly233Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-74912459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912459
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912459
    reference: chr 15
allele count: 18
allele frequency: 1.483166065160429e-4
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.262C>T
  hgvsp: ENSP00000321136.6:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.262C>T
  hgvsp: ENSP00000458099.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.262C>T
  hgvsp: ENSP00000323106.8:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.262C>T
  hgvsp: ENSP00000431825.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-305C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.262C>T
  hgvsp: ENSP00000344112.4:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.706C>T
  hgvsp: ENSP00000378505.3:p.Arg236Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.297C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.306C>T
  hgvsp: ENSP00000457936.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.262C>T
  hgvsp: ENSP00000457696.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.364C>T
  hgvsp: ENSP00000455762.1:p.Arg122Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.262C>T
  hgvsp: ENSP00000455905.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.325C>T
  hgvsp: ENSP00000456278.1:p.Arg109Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.289C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.262C>T
  hgvsp: ENSP00000456399.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.365C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg236Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-74912460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912460
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912460
    reference: chr 15
allele count: 33
allele frequency: 2.719182597231378e-4
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.365G>A
  hgvsp: ENSP00000455762.1:p.Arg122His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.263G>A
  hgvsp: ENSP00000458099.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.366G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.263G>A
  hgvsp: ENSP00000321136.6:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.290G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.263G>A
  hgvsp: ENSP00000323106.8:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.307G>A
  hgvsp: ENSP00000457936.1:p.Arg103His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.263G>A
  hgvsp: ENSP00000457696.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.707G>A
  hgvsp: ENSP00000378505.3:p.Arg236His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.263G>A
  hgvsp: ENSP00000455905.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.263G>A
  hgvsp: ENSP00000431825.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.263G>A
  hgvsp: ENSP00000344112.4:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.326G>A
  hgvsp: ENSP00000456278.1:p.Arg109His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-304G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.298G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.263G>A
  hgvsp: ENSP00000456399.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg236His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

15-74912465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912465
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912465
    reference: chr 15
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-299C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.268C>T
  hgvsp: ENSP00000321136.6:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.268C>T
  hgvsp: ENSP00000323106.8:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.295C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.268C>T
  hgvsp: ENSP00000457696.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.312C>T
  hgvsp: ENSP00000457936.1:p.Arg105Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.303C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.371C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.268C>T
  hgvsp: ENSP00000456399.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.268C>T
  hgvsp: ENSP00000455905.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.268C>T
  hgvsp: ENSP00000431825.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.370C>T
  hgvsp: ENSP00000455762.1:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.268C>T
  hgvsp: ENSP00000458099.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.331C>T
  hgvsp: ENSP00000456278.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.712C>T
  hgvsp: ENSP00000378505.3:p.Arg238Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.268C>T
  hgvsp: ENSP00000344112.4:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg238Cys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-74912466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912466
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912466
    reference: chr 15
allele count: 4
allele frequency: 3.296087544085171e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.296G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.371G>A
  hgvsp: ENSP00000455762.1:p.Arg124His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.269G>A
  hgvsp: ENSP00000456399.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.269G>A
  hgvsp: ENSP00000344112.4:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.269G>A
  hgvsp: ENSP00000455905.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.269G>A
  hgvsp: ENSP00000431825.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.313G>A
  hgvsp: ENSP00000457936.1:p.Arg105His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.372G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-298G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.332G>A
  hgvsp: ENSP00000456278.1:p.Arg111His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.713G>A
  hgvsp: ENSP00000378505.3:p.Arg238His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.269G>A
  hgvsp: ENSP00000457696.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.304G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.269G>A
  hgvsp: ENSP00000321136.6:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.269G>A
  hgvsp: ENSP00000323106.8:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.269G>A
  hgvsp: ENSP00000458099.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg238His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-74912466-GTCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912466
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912463
    reference: chr 15
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.307_309delATC
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.272_274delATC
  hgvsp: ENSP00000457696.1:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.272_274delATC
  hgvsp: ENSP00000455905.1:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.316_318delATC
  hgvsp: ENSP00000457936.1:p.His106del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.272_274delATC
  hgvsp: ENSP00000321136.6:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.272_274delATC
  hgvsp: ENSP00000431825.1:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.374_376delATC
  hgvsp: ENSP00000455762.1:p.His125del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.272_274delATC
  hgvsp: ENSP00000323106.8:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.272_274delATC
  hgvsp: ENSP00000458099.1:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.716_718delATC
  hgvsp: ENSP00000378505.3:p.His239del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.375_377delATC
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-295_-293delATC
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.335_337delATC
  hgvsp: ENSP00000456278.1:p.His112del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.299_301delATC
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.272_274delATC
  hgvsp: ENSP00000456399.1:p.His91del
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.272_274delATC
  hgvsp: ENSP00000344112.4:p.His91del
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His239del
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: GTCA
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

15-74912474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912474
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912474
    reference: chr 15
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.340C>T
  hgvsp: ENSP00000456278.1:p.Arg114Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.277C>T
  hgvsp: ENSP00000323106.8:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.379C>T
  hgvsp: ENSP00000455762.1:p.Arg127Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.277C>T
  hgvsp: ENSP00000344112.4:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.277C>T
  hgvsp: ENSP00000458099.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-290C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.321C>T
  hgvsp: ENSP00000457936.1:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.304C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.277C>T
  hgvsp: ENSP00000455905.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.277C>T
  hgvsp: ENSP00000457696.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.277C>T
  hgvsp: ENSP00000321136.6:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.277C>T
  hgvsp: ENSP00000456399.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.721C>T
  hgvsp: ENSP00000378505.3:p.Arg241Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.312C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.277C>T
  hgvsp: ENSP00000431825.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.380C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg241Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

15-74912475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912475
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912475
    reference: chr 15
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.722G>A
  hgvsp: ENSP00000378505.3:p.Arg241Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.278G>A
  hgvsp: ENSP00000323106.8:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.278G>A
  hgvsp: ENSP00000431825.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-289G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.305G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.278G>A
  hgvsp: ENSP00000344112.4:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.313G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.322G>A
  hgvsp: ENSP00000457936.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.278G>A
  hgvsp: ENSP00000455905.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.278G>A
  hgvsp: ENSP00000321136.6:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.341G>A
  hgvsp: ENSP00000456278.1:p.Arg114Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.278G>A
  hgvsp: ENSP00000457696.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.381G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.380G>A
  hgvsp: ENSP00000455762.1:p.Arg127Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.278G>A
  hgvsp: ENSP00000456399.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.278G>A
  hgvsp: ENSP00000458099.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg241Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/15-74912483-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912483
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912483
    reference: chr 15
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.349C>A
  hgvsp: ENST00000569063.1:c.349C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.286C>A
  hgvsp: ENST00000566126.1:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.321C>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.730C>A
  hgvsp: ENST00000395066.3:c.730C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-281C>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.286C>A
  hgvsp: ENST00000562389.1:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.286C>A
  hgvsp: ENST00000483723.1:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.286C>A
  hgvsp: ENST00000564096.1:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.286C>A
  hgvsp: ENST00000345005.4:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.286C>A
  hgvsp: ENST00000352989.5:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.388C>A
  hgvsp: ENST00000568139.1:c.388C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.286C>A
  hgvsp: ENST00000348245.3:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.389C>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.286C>A
  hgvsp: ENST00000562670.1:c.286C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.330C>A
  hgvsp: ENST00000568488.1:c.330C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.313C>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg244Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

15-74912484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912484
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912484
    reference: chr 15
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.287G>A
  hgvsp: ENSP00000456399.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.331G>A
  hgvsp: ENSP00000457936.1:p.Arg111Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.389G>A
  hgvsp: ENSP00000455762.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.314G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.287G>A
  hgvsp: ENSP00000323106.8:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.287G>A
  hgvsp: ENSP00000431825.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.287G>A
  hgvsp: ENSP00000344112.4:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-280G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.350G>A
  hgvsp: ENSP00000456278.1:p.Arg117Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.287G>A
  hgvsp: ENSP00000458099.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.731G>A
  hgvsp: ENSP00000378505.3:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.287G>A
  hgvsp: ENSP00000457696.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.287G>A
  hgvsp: ENSP00000321136.6:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.390G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.287G>A
  hgvsp: ENSP00000455905.1:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.322G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg244Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-74912485-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912485
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912485
    reference: chr 15
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.288G>A
  hgvsp: ENST00000562670.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.288G>A
  hgvsp: ENST00000348245.3:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.288G>A
  hgvsp: ENST00000566126.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.323G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.351G>A
  hgvsp: ENST00000569063.1:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.288G>A
  hgvsp: ENST00000562389.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.288G>A
  hgvsp: ENST00000345005.4:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.332G>A
  hgvsp: ENST00000568488.1:c.332G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.288G>A
  hgvsp: ENST00000483723.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.732G>A
  hgvsp: ENST00000395066.3:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.288G>A
  hgvsp: ENST00000564096.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.390G>A
  hgvsp: ENST00000568139.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.288G>A
  hgvsp: ENST00000352989.5:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.391G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-279G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.315G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg244Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

15-74912487-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912487
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912487
    reference: chr 15
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.317A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.290A>G
  hgvsp: ENSP00000456399.1:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.392A>G
  hgvsp: ENSP00000455762.1:p.Glu131Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.325A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.393A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.290A>G
  hgvsp: ENSP00000344112.4:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.290A>G
  hgvsp: ENSP00000323106.8:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.334A>G
  hgvsp: ENSP00000457936.1:p.Glu112Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.290A>G
  hgvsp: ENSP00000455905.1:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.353A>G
  hgvsp: ENSP00000456278.1:p.Glu118Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.290A>G
  hgvsp: ENSP00000458099.1:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.290A>G
  hgvsp: ENSP00000321136.6:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.290A>G
  hgvsp: ENSP00000457696.1:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.734A>G
  hgvsp: ENSP00000378505.3:p.Glu245Gly
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-277A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.290A>G
  hgvsp: ENSP00000431825.1:p.Glu97Gly
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu245Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-74912496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912496
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912496
    reference: chr 15
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.343C>T
  hgvsp: ENSP00000457936.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.299C>T
  hgvsp: ENSP00000321136.6:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.743C>T
  hgvsp: ENSP00000378505.3:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.299C>T
  hgvsp: ENSP00000455905.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.401C>T
  hgvsp: ENSP00000455762.1:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.362C>T
  hgvsp: ENSP00000456278.1:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.299C>T
  hgvsp: ENSP00000344112.4:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-268C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.299C>T
  hgvsp: ENSP00000457696.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.299C>T
  hgvsp: ENSP00000458099.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.299C>T
  hgvsp: ENSP00000456399.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.402C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.334C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.299C>T
  hgvsp: ENSP00000431825.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.299C>T
  hgvsp: ENSP00000323106.8:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.326C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro248Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

15-74912497-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912497
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912497
    reference: chr 15
allele count: 4
allele frequency: 3.297174321606383e-5
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.300A>G
  hgvsp: ENST00000352989.5:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.300A>G
  hgvsp: ENST00000348245.3:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.744A>G
  hgvsp: ENST00000395066.3:c.744A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.300A>G
  hgvsp: ENST00000564096.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.402A>G
  hgvsp: ENST00000568139.1:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.300A>G
  hgvsp: ENST00000562670.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.300A>G
  hgvsp: ENST00000566126.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.300A>G
  hgvsp: ENST00000345005.4:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.363A>G
  hgvsp: ENST00000569063.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-267A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.403A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.300A>G
  hgvsp: ENST00000483723.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.300A>G
  hgvsp: ENST00000562389.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.335A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.327A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.344A>G
  hgvsp: ENST00000568488.1:c.344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro248Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-74912501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912501
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912501
    reference: chr 15
allele count: 3
allele frequency: 2.473084595980413e-5
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.304C>T
  hgvsp: ENSP00000321136.6:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.304C>T
  hgvsp: ENSP00000344112.4:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.304C>T
  hgvsp: ENSP00000458099.1:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.304C>T
  hgvsp: ENSP00000457696.1:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.367C>T
  hgvsp: ENSP00000456278.1:p.Arg123Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.748C>T
  hgvsp: ENSP00000378505.3:p.Arg250Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.304C>T
  hgvsp: ENSP00000455905.1:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.406C>T
  hgvsp: ENSP00000455762.1:p.Arg136Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.304C>T
  hgvsp: ENSP00000431825.1:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.304C>T
  hgvsp: ENSP00000323106.8:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.348C>T
  hgvsp: ENSP00000457936.1:p.Arg117Trp
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.407C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.331C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.339C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-263C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.304C>T
  hgvsp: ENSP00000456399.1:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg250Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

15-74912507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912507
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912507
    reference: chr 15
allele count: 3
allele frequency: 2.473410833539451e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.310C>T
  hgvsp: ENSP00000458099.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-257C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.310C>T
  hgvsp: ENSP00000455905.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.310C>T
  hgvsp: ENSP00000323106.8:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.310C>T
  hgvsp: ENSP00000321136.6:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.413C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.412C>T
  hgvsp: ENSP00000455762.1:p.Arg138Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.310C>T
  hgvsp: ENSP00000344112.4:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.354C>T
  hgvsp: ENSP00000457936.1:p.Arg119Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.310C>T
  hgvsp: ENSP00000431825.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.754C>T
  hgvsp: ENSP00000378505.3:p.Arg252Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.310C>T
  hgvsp: ENSP00000457696.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.310C>T
  hgvsp: ENSP00000456399.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.345C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.373C>T
  hgvsp: ENSP00000456278.1:p.Arg125Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.337C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg252Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

15-74912514-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912514
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912514
    reference: chr 15
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.317A>G
  hgvsp: ENSP00000344112.4:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.380A>G
  hgvsp: ENSP00000456278.1:p.His127Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.317A>G
  hgvsp: ENSP00000456399.1:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.419A>G
  hgvsp: ENSP00000455762.1:p.His140Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.317A>G
  hgvsp: ENSP00000323106.8:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.317A>G
  hgvsp: ENSP00000455905.1:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.420A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.317A>G
  hgvsp: ENSP00000458099.1:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.317A>G
  hgvsp: ENSP00000321136.6:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.761A>G
  hgvsp: ENSP00000378505.3:p.His254Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.317A>G
  hgvsp: ENSP00000431825.1:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.344A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-250A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.352A>G
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.361A>G
  hgvsp: ENSP00000457936.1:p.His121Arg
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.317A>G
  hgvsp: ENSP00000457696.1:p.His106Arg
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His254Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

15-74912521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912521
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912521
    reference: chr 15
allele count: 5
allele frequency: 4.123711340206185e-5
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.324C>T
  hgvsp: ENST00000483723.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.427C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.351C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.359C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.426C>T
  hgvsp: ENST00000568139.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.368C>T
  hgvsp: ENST00000568488.1:c.368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.324C>T
  hgvsp: ENST00000562670.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.324C>T
  hgvsp: ENST00000566126.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.324C>T
  hgvsp: ENST00000345005.4:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.768C>T
  hgvsp: ENST00000395066.3:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.324C>T
  hgvsp: ENST00000562389.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.324C>T
  hgvsp: ENST00000348245.3:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.324C>T
  hgvsp: ENST00000352989.5:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.324C>T
  hgvsp: ENST00000564096.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.387C>T
  hgvsp: ENST00000569063.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-243C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His256His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-74912523-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912523
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912523
    reference: chr 15
allele count: 41
allele frequency: 3.435216837589651e-4
allele num: 119352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.361A>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.326A>C
  hgvsp: ENSP00000344112.4:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.326A>C
  hgvsp: ENSP00000457696.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.326A>C
  hgvsp: ENSP00000323106.8:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-241A>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.428A>C
  hgvsp: ENSP00000455762.1:p.His143Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.326A>C
  hgvsp: ENSP00000431825.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.370A>C
  hgvsp: ENSP00000457936.1:p.His124Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.429A>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.326A>C
  hgvsp: ENSP00000321136.6:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.326A>C
  hgvsp: ENSP00000455905.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.326A>C
  hgvsp: ENSP00000458099.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.353A>C
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.389A>C
  hgvsp: ENSP00000456278.1:p.His130Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.770A>C
  hgvsp: ENSP00000378505.3:p.His257Pro
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.326A>C
  hgvsp: ENSP00000456399.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His257Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-74912534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912534
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912534
    reference: chr 15
allele count: 4
allele frequency: 3.299894403379092e-5
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.337C>T
  hgvsp: ENSP00000321136.6:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.337C>T
  hgvsp: ENSP00000431825.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.337C>T
  hgvsp: ENSP00000456399.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.364C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.439C>T
  hgvsp: ENSP00000455762.1:p.Arg147Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.337C>T
  hgvsp: ENSP00000457696.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.440C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.337C>T
  hgvsp: ENSP00000344112.4:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.381C>T
  hgvsp: ENSP00000457936.1:p.Arg128Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.400C>T
  hgvsp: ENSP00000456278.1:p.Arg134Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.781C>T
  hgvsp: ENSP00000378505.3:p.Arg261Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.337C>T
  hgvsp: ENSP00000455905.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-230C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.337C>T
  hgvsp: ENSP00000323106.8:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.337C>T
  hgvsp: ENSP00000458099.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.372C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg261Cys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

15-74912535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912535
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912535
    reference: chr 15
allele count: 2
allele frequency: 1.650219479190732e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.338G>A
  hgvsp: ENSP00000457696.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.338G>A
  hgvsp: ENSP00000456399.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.365G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.440G>A
  hgvsp: ENSP00000455762.1:p.Arg147His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.338G>A
  hgvsp: ENSP00000321136.6:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.338G>A
  hgvsp: ENSP00000458099.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.338G>A
  hgvsp: ENSP00000431825.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.441G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.338G>A
  hgvsp: ENSP00000323106.8:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.338G>A
  hgvsp: ENSP00000344112.4:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.401G>A
  hgvsp: ENSP00000456278.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-229G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.338G>A
  hgvsp: ENSP00000455905.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.782G>A
  hgvsp: ENSP00000378505.3:p.Arg261His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.373G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.382G>A
  hgvsp: ENSP00000457936.1:p.Arg128His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg261His
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

15-74912537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912537
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912537
    reference: chr 15
allele count: 5
allele frequency: 4.125548697976831e-5
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.443C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.340C>T
  hgvsp: ENSP00000321136.6:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.403C>T
  hgvsp: ENSP00000456278.1:p.Arg135Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.375C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.784C>T
  hgvsp: ENSP00000378505.3:p.Arg262Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.340C>T
  hgvsp: ENSP00000323106.8:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.340C>T
  hgvsp: ENSP00000458099.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.340C>T
  hgvsp: ENSP00000455905.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.367C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.340C>T
  hgvsp: ENSP00000344112.4:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.442C>T
  hgvsp: ENSP00000455762.1:p.Arg148Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.340C>T
  hgvsp: ENSP00000457696.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-227C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.384C>T
  hgvsp: ENSP00000457936.1:p.Arg129Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.340C>T
  hgvsp: ENSP00000456399.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.340C>T
  hgvsp: ENSP00000431825.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg262Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-74912538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912538
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912538
    reference: chr 15
allele count: 3
allele frequency: 2.475410918212423e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.341G>A
  hgvsp: ENSP00000455905.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.368G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.341G>A
  hgvsp: ENSP00000323106.8:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.341G>A
  hgvsp: ENSP00000457696.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.444G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.376G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-226G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.443G>A
  hgvsp: ENSP00000455762.1:p.Arg148His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.404G>A
  hgvsp: ENSP00000456278.1:p.Arg135His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.385G>A
  hgvsp: ENSP00000457936.1:p.Arg129His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.341G>A
  hgvsp: ENSP00000431825.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.341G>A
  hgvsp: ENSP00000344112.4:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456399
  ensembl transcript: ENST00000562389
  gene symbol: CLK3
  hgvsc: ENST00000562389.1:c.341G>A
  hgvsp: ENSP00000456399.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.341G>A
  hgvsp: ENSP00000321136.6:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.341G>A
  hgvsp: ENSP00000458099.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.785G>A
  hgvsp: ENSP00000378505.3:p.Arg262His
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg262His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-74912550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912550
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912550
    reference: chr 15
allele count: 5
allele frequency: 4.130934086815711e-5
allele num: 121038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.353G>A
  hgvsp: ENSP00000344112.4:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-214G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.353G>A
  hgvsp: ENSP00000455905.1:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.353G>A
  hgvsp: ENSP00000321136.6:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.456G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.353G>A
  hgvsp: ENSP00000458099.1:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.353G>A
  hgvsp: ENSP00000431825.1:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.353G>A
  hgvsp: ENSP00000323106.8:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.455G>A
  hgvsp: ENSP00000455762.1:p.Cys152Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.388G>A
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.353G>A
  hgvsp: ENSP00000457696.1:p.Cys118Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.416G>A
  hgvsp: ENSP00000456278.1:p.Cys139Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.797G>A
  hgvsp: ENSP00000378505.3:p.Cys266Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.397G>A
  hgvsp: ENSP00000457936.1:p.Cys133Tyr
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.380G>A
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16471
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys266Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-74912554-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912554
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912554
    reference: chr 15
allele count: 20
allele frequency: 1.653138483410755e-4
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.357C>T
  hgvsp: ENST00000348245.3:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.420C>T
  hgvsp: ENST00000569063.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-210C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.801C>T
  hgvsp: ENST00000395066.3:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.459C>T
  hgvsp: ENST00000568139.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.384C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.401C>T
  hgvsp: ENST00000568488.1:c.401C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.357C>T
  hgvsp: ENST00000352989.5:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.357C>T
  hgvsp: ENST00000562670.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.357C>T
  hgvsp: ENST00000564096.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.357C>T
  hgvsp: ENST00000345005.4:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.392C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.357C>T
  hgvsp: ENST00000483723.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.460C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.357C>T
  hgvsp: ENST00000566126.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser267Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

15-74912557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912557
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912557
    reference: chr 15
allele count: 2
allele frequency: 1.654889370645572e-5
allele num: 120854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.387C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.360C>T
  hgvsp: ENST00000566126.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.360C>T
  hgvsp: ENST00000352989.5:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.360C>T
  hgvsp: ENST00000562670.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.360C>T
  hgvsp: ENST00000564096.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-207C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.462C>T
  hgvsp: ENST00000568139.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.395C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.360C>T
  hgvsp: ENST00000348245.3:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.804C>T
  hgvsp: ENST00000395066.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.404C>T
  hgvsp: ENST00000568488.1:c.404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.360C>T
  hgvsp: ENST00000483723.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.360C>T
  hgvsp: ENST00000345005.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.423C>T
  hgvsp: ENST00000569063.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.463C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser268Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

15-74912563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74912563
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74912563
    reference: chr 15
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000323106
  ensembl transcript: ENST00000352989
  gene symbol: CLK3
  hgvsc: ENST00000352989.5:c.366C>T
  hgvsp: ENST00000352989.5:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000458099
  ensembl transcript: ENST00000564096
  gene symbol: CLK3
  hgvsc: ENST00000564096.1:c.366C>T
  hgvsp: ENST00000564096.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000321136
  ensembl transcript: ENST00000348245
  gene symbol: CLK3
  hgvsc: ENST00000348245.3:c.366C>T
  hgvsp: ENST00000348245.3:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000570296
  gene symbol: CLK3
  hgvsc: ENST00000570296.1:n.401C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455762
  ensembl transcript: ENST00000568139
  gene symbol: CLK3
  hgvsc: ENST00000568139.1:c.468C>T
  hgvsp: ENST00000568139.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000344112
  ensembl transcript: ENST00000345005
  gene symbol: CLK3
  hgvsc: ENST00000345005.4:c.366C>T
  hgvsp: ENST00000345005.4:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457696
  ensembl transcript: ENST00000566126
  gene symbol: CLK3
  hgvsc: ENST00000566126.1:c.366C>T
  hgvsp: ENST00000566126.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457936
  ensembl transcript: ENST00000568488
  gene symbol: CLK3
  hgvsc: ENST00000568488.1:c.410C>T
  hgvsp: ENST00000568488.1:c.410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000456278
  ensembl transcript: ENST00000569063
  gene symbol: CLK3
  hgvsc: ENST00000569063.1:c.429C>T
  hgvsp: ENST00000569063.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000568605
  gene symbol: CLK3
  hgvsc: ENST00000568605.1:n.393C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000454830
  gene symbol: CLK3
  hgvsc: ENST00000454830.2:n.469C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000455905
  ensembl transcript: ENST00000562670
  gene symbol: CLK3
  hgvsc: ENST00000562670.1:c.366C>T
  hgvsp: ENST00000562670.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000457362
  ensembl transcript: ENST00000563297
  gene symbol: CLK3
  hgvsc: ENST00000563297.1:c.-201C>T
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000431825
  ensembl transcript: ENST00000483723
  gene symbol: CLK3
  hgvsc: ENST00000483723.1:c.366C>T
  hgvsp: ENST00000483723.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179335
  ensembl protein: ENSP00000378505
  ensembl transcript: ENST00000395066
  gene symbol: CLK3
  hgvsc: ENST00000395066.3:c.810C>T
  hgvsp: ENST00000395066.3:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179335
  ensembl transcript: ENST00000569406
  gene symbol: CLK3
  hgvsc: ENST00000569406.1:n.1C>T
  variant of: http://identifiers.org/hgnc/2071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser270Ser
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 762
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34103
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16043
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.624e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.537353e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeDepth
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34094
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1858
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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Other
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South Asian
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MQ
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VQSLOD
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BaseQRankSum
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QD
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FS
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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African
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Other
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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MQRankSum
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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FS
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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East Asian
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South Asian
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FS
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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QD
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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European (Non-Finnish)
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South Asian
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African
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MQRankSum
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FS
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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DP
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FS
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QD
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MQ
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VQSLOD
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MQ
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DP
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VQSLOD
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South Asian
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East Asian
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QD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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European (Non-Finnish)
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African
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Latino
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South Asian
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East Asian
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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DP
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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DP
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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FS
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MQ
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European (Finnish)
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Latino
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African
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South Asian
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FS
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MQ
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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Latino
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South Asian
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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Other
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Other
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Latino
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African
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South Asian
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East Asian
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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MQRankSum
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QD
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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South Asian
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African
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MQ
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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QD
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MQ
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African
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South Asian
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East Asian
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MQ
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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DP
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FS
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DP
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VQSLOD
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QD
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FS
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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African
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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FS
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DP
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MQ
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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DP
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BaseQRankSum
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MQRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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East Asian
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Latino
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South Asian
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BaseQRankSum
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MQ
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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European (Finnish)
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MQ
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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MQ
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FS
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DP
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BaseQRankSum
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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African
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VQSLOD
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MQRankSum
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QD
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FS
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MQ
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SIO_000300: 5.962e1

DP
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SIO_000300: 1.546721e6

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 9.83e-1

ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 1.727414061150458e-4
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num of homozygotes: 0

East Asian
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European (Finnish)
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African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49934029027228e-5
allele num: 66696
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DP
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

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allele count: 0
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Other
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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QD
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 66688
num of homozygotes: 0

East Asian
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Other
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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DP
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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QD
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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African
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European (Non-Finnish)
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South Asian
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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FS
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MQRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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FS
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MQ
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Latino
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Other
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African
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 3.001020346917952e-5
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Other
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African
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Other
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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MQ
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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allele num: 16512
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Other
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11550
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African
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East Asian
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European (Finnish)
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allele num: 6214
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South Asian
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European (Non-Finnish)
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allele count: 20
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allele num: 65540
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Other
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Latino
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South Asian
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Other
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European (Non-Finnish)
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BaseQRankSum
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QD
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DP
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SIO_000300: 1.550929e6

FS
type: SiteQuality
SIO_000300: 5.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.003814844852963e-5
allele num: 66582
num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

InbreedingCoeff
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SIO_000300: 1.76e-2

QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 5.71e0

FS
type: SiteQuality
SIO_000300: 5.775e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.39e-1

DP
type: SiteQuality
SIO_000300: 1.551333e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e0

FS
type: SiteQuality
SIO_000300: 1.474e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

DP
type: SiteQuality
SIO_000300: 1.550583e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.017028189777069e-5
allele num: 66478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

BaseQRankSum
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DP
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SIO_000300: 1.548758e6

InbreedingCoeff
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SIO_000300: 7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ReadPosRankSum
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SIO_000300: 5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 19
allele frequency: 2.859206645398182e-4
allele num: 66452
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
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DP
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10320
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Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.199e1

MQ
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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