14-101006936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006936
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006936
    reference: chr 14
allele count: 1
allele frequency: 2.502627759147104e-5
allele num: 39958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-20C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-20C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22305
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

14-101006937-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006937
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006937
    reference: chr 14
allele count: 1
allele frequency: 2.667804930103511e-5
allele num: 37484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-21A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-21A>G
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

14-101006939-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006939
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006939
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 37418
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-23A>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-23A>C
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22162
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5893
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

14-101006942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006942
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006942
    reference: chr 14
allele count: 1
allele frequency: 2.935995302407516e-5
allele num: 34060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-26G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-26G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21878
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20038
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

14-101006943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006943
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006943
    reference: chr 14
allele count: 1
allele frequency: 2.931347833733951e-5
allele num: 34114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-27C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-27C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21927
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

14-101006962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006962
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006962
    reference: chr 14
allele count: 3
allele frequency: 1.202597610839413e-4
allele num: 24946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-46C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-46C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22185
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21830
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

14-101006966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006966
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006966
    reference: chr 14
allele count: 1
allele frequency: 4.111503988158869e-5
allele num: 24322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-50G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-50G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7349
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

14-101006967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101006967
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101006967
    reference: chr 14
allele count: 1
allele frequency: 4.137018037398643e-5
allele num: 24172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.388-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.160-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.160-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.352-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.352-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.352-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.352-51C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.409-51C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

14-101010144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010144
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010144
    reference: chr 14
allele count: 10
allele frequency: 1.251470477811429e-4
allele num: 79906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+51G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+51G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9517
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20239
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17477
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8553
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS

14-101010145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010145
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010145
    reference: chr 14
allele count: 1
allele frequency: 1.245919613266552e-5
allele num: 80262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+50C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+50C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20292
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3875
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

14-101010157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010157
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010157
    reference: chr 14
allele count: 4
allele frequency: 4.859794916654517e-5
allele num: 82308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+38G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+38G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10123
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11563
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

14-101010158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010158
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010158
    reference: chr 14
allele count: 17
allele frequency: 2.049180327868852e-4
allele num: 82960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+37C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+37C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17002
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18740
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 9.75e1
  variant carriers: 17
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

14-101010171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010171
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010171
    reference: chr 14
allele count: 1
allele frequency: 1.137837653323624e-5
allele num: 87886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+24C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+24C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13240
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-101010185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010185
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010185
    reference: chr 14
allele count: 1
allele frequency: 1.057551978679752e-5
allele num: 94558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+10G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+10G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

14-101010186-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010186
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010186
    reference: chr 14
allele count: 3
allele frequency: 3.136762860727729e-5
allele num: 95640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408+9C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159+9C>G
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

14-101010195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010195
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010195
    reference: chr 14
allele count: 2
allele frequency: 1.961399654793661e-5
allele num: 101968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.351C>T
  hgvsp: ENST00000557378.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.408C>T
  hgvsp: ENST00000554140.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.351C>T
  hgvsp: ENST00000556188.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.387C>T
  hgvsp: ENST00000553553.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.351C>T
  hgvsp: ENST00000443071.2:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.159C>T
  hgvsp: ENST00000554356.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.351C>T
  hgvsp: ENST00000355173.2:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.159C>T
  hgvsp: ENST00000556751.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 0
hgvs: c.351C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

14-101010203-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010203
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010203
    reference: chr 14
allele count: 1
allele frequency: 9.373301089177587e-6
allele num: 106686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.400G>C
  hgvsp: ENSP00000451125.1:p.Glu134Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.343G>C
  hgvsp: ENSP00000452157.1:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.151G>C
  hgvsp: ENSP00000451380.1:p.Glu51Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.343G>C
  hgvsp: ENSP00000450722.1:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.343G>C
  hgvsp: ENSP00000347301.2:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.379G>C
  hgvsp: ENSP00000451397.1:p.Glu127Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.151G>C
  hgvsp: ENSP00000452607.1:p.Glu51Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.343G>C
  hgvsp: ENSP00000411124.2:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu115Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

14-101010204-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010204
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010204
    reference: chr 14
allele count: 3051
allele frequency: 2.832395699883028e-2
allele num: 107718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.342A>G
  hgvsp: ENST00000556188.1:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.342A>G
  hgvsp: ENST00000557378.1:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.150A>G
  hgvsp: ENST00000556751.1:c.150A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.150A>G
  hgvsp: ENST00000554356.1:c.150A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.378A>G
  hgvsp: ENST00000553553.1:c.378A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.399A>G
  hgvsp: ENST00000554140.1:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.342A>G
  hgvsp: ENST00000443071.2:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.342A>G
  hgvsp: ENST00000355173.2:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 1.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36118
  bin: 2.25e1
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 2.75e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 3.25e1
  variant carriers: 293
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 9.75e1
  variant carriers: 2585
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 3
hgvs: p.Ser114Ser
num of homozygotes: 273
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

14-101010205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010205
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010205
    reference: chr 14
allele count: 1
allele frequency: 9.263376315399436e-6
allele num: 107952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.341C>T
  hgvsp: ENSP00000450722.1:p.Ser114Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.149C>T
  hgvsp: ENSP00000452607.1:p.Ser50Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.341C>T
  hgvsp: ENSP00000347301.2:p.Ser114Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.341C>T
  hgvsp: ENSP00000411124.2:p.Ser114Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.149C>T
  hgvsp: ENSP00000451380.1:p.Ser50Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.377C>T
  hgvsp: ENSP00000451397.1:p.Ser126Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.341C>T
  hgvsp: ENSP00000452157.1:p.Ser114Leu
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.398C>T
  hgvsp: ENSP00000451125.1:p.Ser133Leu
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36712
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser114Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

14-101010207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010207
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010207
    reference: chr 14
allele count: 1
allele frequency: 9.214551619918175e-6
allele num: 108524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.147G>A
  hgvsp: ENST00000556751.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.339G>A
  hgvsp: ENST00000355173.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.339G>A
  hgvsp: ENST00000556188.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.339G>A
  hgvsp: ENST00000443071.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.339G>A
  hgvsp: ENST00000557378.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.375G>A
  hgvsp: ENST00000553553.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.147G>A
  hgvsp: ENST00000554356.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.396G>A
  hgvsp: ENST00000554140.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu113Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

14-101010213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010213
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010213
    reference: chr 14
allele count: 1
allele frequency: 9.124420599291944e-6
allele num: 109596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.333C>T
  hgvsp: ENST00000556188.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.333C>T
  hgvsp: ENST00000355173.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.141C>T
  hgvsp: ENST00000556751.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.333C>T
  hgvsp: ENST00000443071.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.333C>T
  hgvsp: ENST00000557378.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.390C>T
  hgvsp: ENST00000554140.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.141C>T
  hgvsp: ENST00000554356.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.369C>T
  hgvsp: ENST00000553553.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp111Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

14-101010242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010242
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010242
    reference: chr 14
allele count: 1
allele frequency: 9.096863401499163e-6
allele num: 109928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.112C>T
  hgvsp: ENSP00000452607.1:p.His38Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.304C>T
  hgvsp: ENSP00000450722.1:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.304C>T
  hgvsp: ENSP00000411124.2:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.112C>T
  hgvsp: ENSP00000451380.1:p.His38Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.304C>T
  hgvsp: ENSP00000452157.1:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.340C>T
  hgvsp: ENSP00000451397.1:p.His114Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.304C>T
  hgvsp: ENSP00000347301.2:p.His102Tyr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.361C>T
  hgvsp: ENSP00000451125.1:p.His121Tyr
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His102Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

14-101010245-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010245
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010245
    reference: chr 14
allele count: 2
allele frequency: 1.818148760931619e-5
allele num: 110002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.358A>G
  hgvsp: ENSP00000451125.1:p.Ser120Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.109A>G
  hgvsp: ENSP00000452607.1:p.Ser37Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.301A>G
  hgvsp: ENSP00000411124.2:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.301A>G
  hgvsp: ENSP00000450722.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.301A>G
  hgvsp: ENSP00000452157.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.301A>G
  hgvsp: ENSP00000347301.2:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.109A>G
  hgvsp: ENSP00000451380.1:p.Ser37Gly
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.337A>G
  hgvsp: ENSP00000451397.1:p.Ser113Gly
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser101Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/14-101010255-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010255
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010255
    reference: chr 14
allele count: 161
allele frequency: 1.496727651346125e-3
allele num: 107568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.327T>G
  hgvsp: ENST00000553553.1:c.327T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.291T>G
  hgvsp: ENST00000443071.2:c.291T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.348T>G
  hgvsp: ENST00000554140.1:c.348T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.291T>G
  hgvsp: ENST00000556188.1:c.291T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.291T>G
  hgvsp: ENST00000557378.1:c.291T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.99T>G
  hgvsp: ENST00000556751.1:c.99T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.99T>G
  hgvsp: ENST00000554356.1:c.99T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.291T>G
  hgvsp: ENST00000355173.2:c.291T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32645
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.25e1
  variant carriers: 2
hgvs: p.Val97Val
num of homozygotes: 1
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

14-101010263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010263
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010263
    reference: chr 14
allele count: 5
allele frequency: 4.883861767176542e-5
allele num: 102378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.283G>A
  hgvsp: ENSP00000347301.2:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.283G>A
  hgvsp: ENSP00000452157.1:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.340G>A
  hgvsp: ENSP00000451125.1:p.Glu114Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.91G>A
  hgvsp: ENSP00000452607.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.283G>A
  hgvsp: ENSP00000450722.1:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.319G>A
  hgvsp: ENSP00000451397.1:p.Glu107Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.283G>A
  hgvsp: ENSP00000411124.2:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.91G>A
  hgvsp: ENSP00000451380.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27222
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu95Lys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

14-101010264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010264
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010264
    reference: chr 14
allele count: 3
allele frequency: 2.930488805532763e-5
allele num: 102372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.282C>T
  hgvsp: ENST00000557378.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.282C>T
  hgvsp: ENST00000443071.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.90C>T
  hgvsp: ENST00000556751.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.339C>T
  hgvsp: ENST00000554140.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.282C>T
  hgvsp: ENST00000355173.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.90C>T
  hgvsp: ENST00000554356.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.282C>T
  hgvsp: ENST00000556188.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.318C>T
  hgvsp: ENST00000553553.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His94His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

14-101010264-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010264
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010264
    reference: chr 14
allele count: 1
allele frequency: 9.768296018442543e-6
allele num: 102372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.282C>G
  hgvsp: ENSP00000452157.1:p.His94Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.90C>G
  hgvsp: ENSP00000451380.1:p.His30Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.339C>G
  hgvsp: ENSP00000451125.1:p.His113Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.282C>G
  hgvsp: ENSP00000450722.1:p.His94Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.90C>G
  hgvsp: ENSP00000452607.1:p.His30Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.282C>G
  hgvsp: ENSP00000411124.2:p.His94Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.282C>G
  hgvsp: ENSP00000347301.2:p.His94Gln
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.318C>G
  hgvsp: ENSP00000451397.1:p.His106Gln
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His94Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-101010273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010273
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010273
    reference: chr 14
allele count: 2
allele frequency: 2.06782464846981e-5
allele num: 96720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.273G>A
  hgvsp: ENST00000557378.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.273G>A
  hgvsp: ENST00000355173.2:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.81G>A
  hgvsp: ENST00000554356.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.273G>A
  hgvsp: ENST00000443071.2:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.309G>A
  hgvsp: ENST00000553553.1:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.81G>A
  hgvsp: ENST00000556751.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.330G>A
  hgvsp: ENST00000554140.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.273G>A
  hgvsp: ENST00000556188.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29350
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala91Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

14-101010277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010277
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010277
    reference: chr 14
allele count: 4
allele frequency: 4.262302069347655e-5
allele num: 93846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.326G>A
  hgvsp: ENSP00000451125.1:p.Arg109His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.269G>A
  hgvsp: ENSP00000450722.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.269G>A
  hgvsp: ENSP00000452157.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.77G>A
  hgvsp: ENSP00000452607.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.77G>A
  hgvsp: ENSP00000451380.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.269G>A
  hgvsp: ENSP00000411124.2:p.Arg90His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.269G>A
  hgvsp: ENSP00000347301.2:p.Arg90His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.305G>A
  hgvsp: ENSP00000451397.1:p.Arg102His
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg90His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

14-101010278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010278
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010278
    reference: chr 14
allele count: 1
allele frequency: 1.067395341886728e-5
allele num: 93686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.76C>T
  hgvsp: ENSP00000451380.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.268C>T
  hgvsp: ENSP00000450722.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.325C>T
  hgvsp: ENSP00000451125.1:p.Arg109Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.268C>T
  hgvsp: ENSP00000411124.2:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.304C>T
  hgvsp: ENSP00000451397.1:p.Arg102Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.76C>T
  hgvsp: ENSP00000452607.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.268C>T
  hgvsp: ENSP00000347301.2:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.268C>T
  hgvsp: ENSP00000452157.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg90Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

14-101010279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010279
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010279
    reference: chr 14
allele count: 1
allele frequency: 1.080683856744548e-5
allele num: 92534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.267G>A
  hgvsp: ENST00000355173.2:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.324G>A
  hgvsp: ENST00000554140.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.354G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.267G>A
  hgvsp: ENST00000443071.2:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.75G>A
  hgvsp: ENST00000554356.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.267G>A
  hgvsp: ENST00000557378.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.75G>A
  hgvsp: ENST00000556751.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.267G>A
  hgvsp: ENST00000556188.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.303G>A
  hgvsp: ENST00000553553.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13605
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys89Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

14-101010291-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010291
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010291
    reference: chr 14
allele count: 1
allele frequency: 1.184020459873547e-5
allele num: 84458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.291T>C
  hgvsp: ENST00000553553.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.255T>C
  hgvsp: ENST00000355173.2:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.342T>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.255T>C
  hgvsp: ENST00000556188.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.255T>C
  hgvsp: ENST00000443071.2:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.63T>C
  hgvsp: ENST00000554356.1:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.255T>C
  hgvsp: ENST00000557378.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.312T>C
  hgvsp: ENST00000554140.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.63T>C
  hgvsp: ENST00000556751.1:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr85Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

14-101010294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010294
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010294
    reference: chr 14
allele count: 1
allele frequency: 1.20918984280532e-5
allele num: 82700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.252C>T
  hgvsp: ENST00000556188.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.60C>T
  hgvsp: ENST00000554356.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.252C>T
  hgvsp: ENST00000443071.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.252C>T
  hgvsp: ENST00000557378.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.252C>T
  hgvsp: ENST00000355173.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.288C>T
  hgvsp: ENST00000553553.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.309C>T
  hgvsp: ENST00000554140.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.339C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.60C>T
  hgvsp: ENST00000556751.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His84His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-101010315-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010315
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010315
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 64476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-13G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-13G>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22394
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-101010315-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010315
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010315
    reference: chr 14
allele count: 1
allele frequency: 1.550964700043427e-5
allele num: 64476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-13G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-13G>C
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18966
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

14-101010315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010315
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010315
    reference: chr 14
allele count: 11
allele frequency: 1.70606117004777e-4
allele num: 64476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-13G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-13G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22394
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18966
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

14-101010319-GGGAGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010319
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010313
    reference: chr 14
allele count: 1
allele frequency: 1.679261125104954e-5
allele num: 59550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-23_244-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-23_331-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-23_244-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-23_244-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-23_301-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-23_52-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-23_280-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-23_244-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-23_52-18delTCCTCC
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18009
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7771
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GGGAGGA
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-101010327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010327
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010327
    reference: chr 14
allele count: 1
allele frequency: 1.898686109212425e-5
allele num: 52668
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-25C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-25C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

14-101010327-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010327
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010327
    reference: chr 14
allele count: 2
allele frequency: 3.79737221842485e-5
allele num: 52668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-25C>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-25C>G
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-101010333-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010333
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010333
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 47138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-31G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-31G>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 11936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24035
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS

14-101010333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010333
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010333
    reference: chr 14
allele count: 4
allele frequency: 8.485722771437057e-5
allele num: 47138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-31G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-31G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24035
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

14-101010334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010334
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010334
    reference: chr 14
allele count: 1
allele frequency: 2.160013824088474e-5
allele num: 46296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-32C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

14-101010335-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010335
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010334
    reference: chr 14
allele count: 1
allele frequency: 2.171835635479107e-5
allele num: 46044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-34delC
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-34delC
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24293
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: TG
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

14-101010353-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101010353
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101010353
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 34712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.52-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.301-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.244-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.280-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.244-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.52-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.244-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.331-51G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.244-51G>C
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26985
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9682
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

14-101011288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011288
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011288
    reference: chr 14
allele count: 379
allele frequency: 3.145176013676121e-3
allele num: 120502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+49G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+49G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4068
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

14-101011289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011289
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011289
    reference: chr 14
allele count: 4
allele frequency: 3.317354741329264e-5
allele num: 120578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+48C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+48C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

14-101011290-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011290
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011290
    reference: chr 14
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+47C>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+47C>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29025
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

14-101011295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011295
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011295
    reference: chr 14
allele count: 6
allele frequency: 4.972980141232636e-5
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+42C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+42C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

14-101011304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011304
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011304
    reference: chr 14
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+33C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+33C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

14-101011305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011305
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011305
    reference: chr 14
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+32C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+32C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-101011306-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011306
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011306
    reference: chr 14
allele count: 2
allele frequency: 1.657962364254331e-5
allele num: 120630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+31A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+31A>G
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-101011307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011307
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011307
    reference: chr 14
allele count: 3
allele frequency: 2.485748375977728e-5
allele num: 120688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+30C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+30C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

14-101011308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011308
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011308
    reference: chr 14
allele count: 2
allele frequency: 1.65694591728526e-5
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+29C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+29C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29012
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-101011315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011315
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011315
    reference: chr 14
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+22C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+22C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS

14-101011318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011318
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011318
    reference: chr 14
allele count: 15
allele frequency: 1.242112585084712e-4
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+19G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+19G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

14-101011319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011319
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011319
    reference: chr 14
allele count: 417
allele frequency: 3.45272989219534e-3
allele num: 120774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+18C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+18C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 11
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

14-101011323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011323
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011323
    reference: chr 14
allele count: 7
allele frequency: 5.793934578201563e-5
allele num: 120816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+14G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+14G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

14-101011324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011324
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011324
    reference: chr 14
allele count: 44
allele frequency: 3.64154004038799e-4
allele num: 120828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+13C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+13C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/14-101011328-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011328
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011328
    reference: chr 14
allele count: 2
allele frequency: 1.654944145635085e-5
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+9G>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+9G>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

14-101011328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011328
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011328
    reference: chr 14
allele count: 7
allele frequency: 5.792304509722797e-5
allele num: 120850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+9G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+9G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9144
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

14-101011329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011329
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011329
    reference: chr 14
allele count: 4
allele frequency: 3.309723969020984e-5
allele num: 120856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.279+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.300+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.330+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.243+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.243+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.51+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.243+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.51+8C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.243+8C>T
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
hgvs: c.243+8C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-101011341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011341
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011341
    reference: chr 14
allele count: 2
allele frequency: 1.65404082172748e-5
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.239G>A
  hgvsp: ENSP00000411124.2:p.Arg80His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.239G>A
  hgvsp: ENSP00000347301.2:p.Arg80His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.239G>A
  hgvsp: ENSP00000450722.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.47G>A
  hgvsp: ENSP00000451380.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.239G>A
  hgvsp: ENSP00000452157.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.296G>A
  hgvsp: ENSP00000451125.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.326G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.47G>A
  hgvsp: ENSP00000452607.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.275G>A
  hgvsp: ENSP00000451397.1:p.Arg92His
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg80His
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

14-101011342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011342
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011342
    reference: chr 14
allele count: 4
allele frequency: 3.307698668651286e-5
allele num: 120930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.325C>T
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.238C>T
  hgvsp: ENSP00000347301.2:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.46C>T
  hgvsp: ENSP00000451380.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.295C>T
  hgvsp: ENSP00000451125.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.274C>T
  hgvsp: ENSP00000451397.1:p.Arg92Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.238C>T
  hgvsp: ENSP00000450722.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.238C>T
  hgvsp: ENSP00000452157.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.238C>T
  hgvsp: ENSP00000411124.2:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.46C>T
  hgvsp: ENSP00000452607.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg80Cys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

14-101011354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011354
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011354
    reference: chr 14
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.226G>A
  hgvsp: ENSP00000347301.2:p.Asp76Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.34G>A
  hgvsp: ENSP00000451380.1:p.Asp12Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.283G>A
  hgvsp: ENSP00000451125.1:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.226G>A
  hgvsp: ENSP00000450722.1:p.Asp76Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.34G>A
  hgvsp: ENSP00000452607.1:p.Asp12Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.226G>A
  hgvsp: ENSP00000411124.2:p.Asp76Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.313G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.262G>A
  hgvsp: ENSP00000451397.1:p.Asp88Asn
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.226G>A
  hgvsp: ENSP00000452157.1:p.Asp76Asn
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp76Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-101011358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011358
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011358
    reference: chr 14
allele count: 14
allele frequency: 1.157177808635853e-4
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.222G>A
  hgvsp: ENST00000556188.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.30G>A
  hgvsp: ENST00000556751.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.30G>A
  hgvsp: ENST00000554356.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.222G>A
  hgvsp: ENST00000355173.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.279G>A
  hgvsp: ENST00000554140.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.222G>A
  hgvsp: ENST00000443071.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.258G>A
  hgvsp: ENST00000553553.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.309G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.222G>A
  hgvsp: ENST00000557378.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4859
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu74Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

14-101011376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011376
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011376
    reference: chr 14
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.204G>A
  hgvsp: ENST00000556188.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.261G>A
  hgvsp: ENST00000554140.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.12G>A
  hgvsp: ENST00000556751.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.204G>A
  hgvsp: ENST00000557378.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.240G>A
  hgvsp: ENST00000553553.1:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.12G>A
  hgvsp: ENST00000554356.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.204G>A
  hgvsp: ENST00000355173.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.204G>A
  hgvsp: ENST00000443071.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.291G>A
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln68Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

14-101011384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011384
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011384
    reference: chr 14
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.196G>C
  hgvsp: ENSP00000450722.1:p.Ala66Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.253G>C
  hgvsp: ENSP00000451125.1:p.Ala85Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.196G>C
  hgvsp: ENSP00000411124.2:p.Ala66Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.4G>C
  hgvsp: ENSP00000452607.1:p.Ala2Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.196G>C
  hgvsp: ENSP00000452157.1:p.Ala66Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.4G>C
  hgvsp: ENSP00000451380.1:p.Ala2Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.196G>C
  hgvsp: ENSP00000347301.2:p.Ala66Pro
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.283G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.232G>C
  hgvsp: ENSP00000451397.1:p.Ala78Pro
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala66Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

14-101011384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011384
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011384
    reference: chr 14
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.196G>A
  hgvsp: ENSP00000411124.2:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.196G>A
  hgvsp: ENSP00000452157.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.4G>A
  hgvsp: ENSP00000452607.1:p.Ala2Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.196G>A
  hgvsp: ENSP00000347301.2:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.283G>A
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.232G>A
  hgvsp: ENSP00000451397.1:p.Ala78Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.4G>A
  hgvsp: ENSP00000451380.1:p.Ala2Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.253G>A
  hgvsp: ENSP00000451125.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.196G>A
  hgvsp: ENSP00000450722.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/24163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala66Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

14-101011385-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011385
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011385
    reference: chr 14
allele count: 4
allele frequency: 3.306932985003059e-5
allele num: 120958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.3G>C
  hgvsp: ENSP00000452607.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.282G>C
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.231G>C
  hgvsp: ENSP00000451397.1:p.Met77Ile
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.195G>C
  hgvsp: ENSP00000452157.1:p.Met65Ile
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.195G>C
  hgvsp: ENSP00000450722.1:p.Met65Ile
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.3G>C
  hgvsp: ENSP00000451380.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.195G>C
  hgvsp: ENSP00000347301.2:p.Met65Ile
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.252G>C
  hgvsp: ENSP00000451125.1:p.Met84Ile
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.195G>C
  hgvsp: ENSP00000411124.2:p.Met65Ile
  variant of: http://identifiers.org/hgnc/24163
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-101011387-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101011387
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 101011387
    reference: chr 14
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452607
  ensembl transcript: ENST00000554356
  gene symbol: BEGAIN
  hgvsc: ENST00000554356.1:c.1A>G
  hgvsp: ENSP00000452607.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000452157
  ensembl transcript: ENST00000556188
  gene symbol: BEGAIN
  hgvsc: ENST00000556188.1:c.193A>G
  hgvsp: ENSP00000452157.1:p.Met65Val
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000450722
  ensembl transcript: ENST00000557378
  gene symbol: BEGAIN
  hgvsc: ENST00000557378.1:c.193A>G
  hgvsp: ENSP00000450722.1:p.Met65Val
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183092
  ensembl transcript: ENST00000554274
  gene symbol: BEGAIN
  hgvsc: ENST00000554274.1:n.280A>G
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000347301
  ensembl transcript: ENST00000355173
  gene symbol: BEGAIN
  hgvsc: ENST00000355173.2:c.193A>G
  hgvsp: ENSP00000347301.2:p.Met65Val
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451380
  ensembl transcript: ENST00000556751
  gene symbol: BEGAIN
  hgvsc: ENST00000556751.1:c.1A>G
  hgvsp: ENSP00000451380.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451397
  ensembl transcript: ENST00000553553
  gene symbol: BEGAIN
  hgvsc: ENST00000553553.1:c.229A>G
  hgvsp: ENSP00000451397.1:p.Met77Val
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000411124
  ensembl transcript: ENST00000443071
  gene symbol: BEGAIN
  hgvsc: ENST00000443071.2:c.193A>G
  hgvsp: ENSP00000411124.2:p.Met65Val
  variant of: http://identifiers.org/hgnc/24163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183092
  ensembl protein: ENSP00000451125
  ensembl transcript: ENST00000554140
  gene symbol: BEGAIN
  hgvsc: ENST00000554140.1:c.250A>G
  hgvsp: ENSP00000451125.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/24163
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T

GenotypeQuality
all individuals: 1471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.068604402650139e-4
allele num: 9358
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
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DP
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FS
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18314
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 2904
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

South Asian
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allele frequency: 1.090750436300175e-4
allele num: 9168
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
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VQSLOD
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DP
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ClippingRankSum
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QD
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FS
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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DP
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 2444
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.763e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.082e1

VQSLOD
type: SiteQuality
SIO_000300: -1.004e0

DP
type: SiteQuality
SIO_000300: 5.55284e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 2.726281352235551e-4
allele num: 3668
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.52759e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.855453350854138e-4
allele num: 3044
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 10790
num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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Latino
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Other
type: Population
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allele frequency: 0.0e0
allele num: 216
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East Asian
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FS
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QD
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VQSLOD
type: SiteQuality
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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South Asian
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allele frequency: 1.254390366281987e-4
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European (Finnish)
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African
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East Asian
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Other
type: Population
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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East Asian
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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Other
type: Population
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

DP
type: SiteQuality
SIO_000300: 8.64663e5

VQSLOD
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 8.818e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 655
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.825735845726137e-5
allele num: 45322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 1.69e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

VQSLOD
type: SiteQuality
SIO_000300: -3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 9.20503e5

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 325
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8019
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45630
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.983077736647277e-3
allele num: 7564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.642007926023778e-4
allele num: 7570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 9.29883e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 2.995e0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.388e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
all individuals: 871
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.269680040629761e-4
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

FS
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 1.033614e6

QD
type: SiteQuality
SIO_000300: 7.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.064e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.39e-1

GenotypeQuality
all individuals: 875
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 858
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.462415911085113e-4
allele num: 6838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

DP
type: SiteQuality
SIO_000300: 1.146527e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.095e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 29981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.303086135421465e-4
allele num: 13026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

FS
type: SiteQuality
SIO_000300: 4.401e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.15421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.149e1

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1981
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.463486023708474e-4
allele num: 13666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 1.239691e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

FS
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 244
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.685431133283894e-5
allele num: 59332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.30035e6

FS
type: SiteQuality
SIO_000300: 1.064e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e0

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 611
bin: 3.75e1
variant carriers: 20

GenotypeQuality
all individuals: 3207
bin: 6.75e1
variant carriers: 26

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 7151
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 40538
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 491
bin: 5.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1034
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 15

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 9.904314252140339e-4
allele num: 59570
num of homozygotes: 0

Latino
type: Population
allele count: 122
allele frequency: 1.168582375478927e-2
allele num: 10440
num of homozygotes: 0

South Asian
type: Population
allele count: 139
allele frequency: 9.76123595505618e-3
allele num: 14240
num of homozygotes: 3

African
type: Population
allele count: 2297
allele frequency: 2.397703549060543e-1
allele num: 9580
num of homozygotes: 260

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

East Asian
type: Population
allele count: 421
allele frequency: 5.278335005015045e-2
allele num: 7976
num of homozygotes: 10

Other
type: Population
allele count: 13
allele frequency: 1.662404092071611e-2
allele num: 782
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.515e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 1.52e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.367646e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

GenotypeQuality
all individuals: 971
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.554748710108924e-5
allele num: 10466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

QD
type: SiteQuality
SIO_000300: 1.392e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 4.123e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.299104e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.662234042553192e-5
allele num: 60160
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

FS
type: SiteQuality
SIO_000300: 8.481e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

QD
type: SiteQuality
SIO_000300: 7.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.306425e6

GenotypeQuality
all individuals: 881
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60776
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.235788433020267e-4
allele num: 8092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.506e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.319884e6

GenotypeQuality
all individuals: 3554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 42300
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639666819702236e-5
allele num: 60988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.328281e6

QD
type: SiteQuality
SIO_000300: 7.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.558e-1

GenotypeQuality
all individuals: 641
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 179
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.370614035087719e-4
allele num: 14592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61030
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 3.506e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.329618e6

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 151

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

African
type: Population
allele count: 145
allele frequency: 1.562163326869209e-2
allele num: 9282
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.002801120448179e-5
allele num: 14280
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.269035532994924e-3
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 8.625646923519264e-4
allele num: 10434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.37464826477288e-5
allele num: 59704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.858e0

QD
type: SiteQuality
SIO_000300: 1.307e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.304329e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13726
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.389830508474576e-4
allele num: 8850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.510866130674437e-5
allele num: 56966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

DP
type: SiteQuality
SIO_000300: 1.228671e6

FS
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.034e1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.266114309787951e-5
allele num: 56968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

FS
type: SiteQuality
SIO_000300: 4.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.22744e6

QD
type: SiteQuality
SIO_000300: 9.77e0

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35059
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.755371436595984e-5
allele num: 56968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.22744e6

FS
type: SiteQuality
SIO_000300: 4.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 1051
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GenotypeQuality
all individuals: 610
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GenotypeQuality
all individuals: 533
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.714986254550858e-5
allele num: 53836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.073e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

QD
type: SiteQuality
SIO_000300: 1.597e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

DP
type: SiteQuality
SIO_000300: 1.146337e6

GenotypeQuality
all individuals: 2128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.656674706175108e-5
allele num: 52242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 1.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 1.103866e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.222e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.916883913510198e-5
allele num: 52168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 3.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

VQSLOD
type: SiteQuality
SIO_000300: -1.22e-2

DP
type: SiteQuality
SIO_000300: 1.102871e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.747133560582585e-5
allele num: 12908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.669e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.097e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

DP
type: SiteQuality
SIO_000300: 1.084289e6

FS
type: SiteQuality
SIO_000300: 5.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 607
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variant carriers: 1

GenotypeQuality
all individuals: 17951
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.127116480898494e-5
allele num: 47012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.397e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 9.78615e5

MQ
type: SiteQuality
SIO_000300: 5.876e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

FS
type: SiteQuality
SIO_000300: 2.026e0

QD
type: SiteQuality
SIO_000300: 8.49e0

VQSLOD
type: SiteQuality
SIO_000300: -3.198e0

GenotypeQuality
all individuals: 607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2949
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.174007565546328e-5
allele num: 45998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.54206e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 9.33e0

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.53e-1

FS
type: SiteQuality
SIO_000300: 4.286e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1542
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

FS
type: SiteQuality
SIO_000300: 2.622e0

DP
type: SiteQuality
SIO_000300: 7.71535e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3239
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.712328767123288e-4
allele num: 5840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.139e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 7.71535e5

FS
type: SiteQuality
SIO_000300: 2.622e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.883561643835617e-3
allele num: 5840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.622e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

DP
type: SiteQuality
SIO_000300: 7.71535e5

GenotypeQuality
all individuals: 1631
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 462
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.558401835213153e-5
allele num: 10462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32718
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.16e0

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 1.983e0

DP
type: SiteQuality
SIO_000300: 7.33356e5

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.982553528945282e-4
allele num: 5044
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.665e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 2.3526e1

QD
type: SiteQuality
SIO_000300: 1.393e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 6.80826e5

GenotypeQuality
all individuals: 3016
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1956
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.75330396475771e-4
allele num: 3632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.468368479467259e-5
allele num: 28832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

FS
type: SiteQuality
SIO_000300: 2.3526e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.665e0

DP
type: SiteQuality
SIO_000300: 6.80826e5

QD
type: SiteQuality
SIO_000300: 1.393e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 2443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

QD
type: SiteQuality
SIO_000300: 1.31e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 6.47016e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3579
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 169
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.165229550221394e-4
allele num: 25746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.032844453625284e-4
allele num: 9682
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 6.47016e5

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.971721344030503e-5
allele num: 25178
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

FS
type: SiteQuality
SIO_000300: 1.747e0

MQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

DP
type: SiteQuality
SIO_000300: 6.41102e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.985651654045436e-5
allele num: 25090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.115e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

DP
type: SiteQuality
SIO_000300: 6.35716e5

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.072e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 692
bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.82338e5

VQSLOD
type: SiteQuality
SIO_000300: -1.371e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
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GenotypeQuality
all individuals: 4555
bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 7.25e1
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GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29219
bin: 9.75e1
variant carriers: 377

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.218026796589525e-4
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 45
allele frequency: 3.898804366660891e-3
allele num: 11542
num of homozygotes: 1

African
type: Population
allele count: 6
allele frequency: 5.847953216374269e-4
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.668183196845617e-3
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 313
allele frequency: 4.730097322130206e-3
allele num: 66172
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 1.496e1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.24e0

DP
type: SiteQuality
SIO_000300: 2.653874e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4116
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29029
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.947798987144527e-4
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.021330593993595e-5
allele num: 66196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.355e1

FS
type: SiteQuality
SIO_000300: 2.736e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

DP
type: SiteQuality
SIO_000300: 2.644646e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 7.75e1
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GenotypeQuality
all individuals: 3923
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.411e1

VQSLOD
type: SiteQuality
SIO_000300: -8.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

FS
type: SiteQuality
SIO_000300: 1.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 2.645086e6

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 4280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 407
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 7990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.040106305870983e-5
allele num: 66224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

FS
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.003e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.647832e6

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 8466
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 2471
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variant carriers: 0

GenotypeQuality
all individuals: 4288
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 3921
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variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 4.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.261e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e0

DP
type: SiteQuality
SIO_000300: 2.650758e6

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

GenotypeQuality
all individuals: 4763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 4287
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 159
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GenotypeQuality
all individuals: 8419
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.327e1

FS
type: SiteQuality
SIO_000300: 4.545e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

DP
type: SiteQuality
SIO_000300: 2.650751e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 2283
bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 2.651338e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

GenotypeQuality
all individuals: 4152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 69
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.723842862699339e-5
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.155e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.746e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

DP
type: SiteQuality
SIO_000300: 2.651742e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 86
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GenotypeQuality
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 63
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 4151
bin: 7.75e1
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GenotypeQuality
all individuals: 4283
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019141356198297e-5
allele num: 66244
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 2.652108e6

QD
type: SiteQuality
SIO_000300: 1.208e1

FS
type: SiteQuality
SIO_000300: 1.123e0

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.955e0

GenotypeQuality
all individuals: 350
bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509206157561123e-5
allele num: 66260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.282e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 8.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.637e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.653966e6

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.163692785104732e-3
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

QD
type: SiteQuality
SIO_000300: 1.164e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 2.655255e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 405

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.543070935039074e-5
allele num: 66286
num of homozygotes: 0

African
type: Population
allele count: 395
allele frequency: 3.83197516492045e-2
allele num: 10308
num of homozygotes: 11

Latino
type: Population
allele count: 15
allele frequency: 1.299376299376299e-3
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

FS
type: SiteQuality
SIO_000300: 2.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 2.670747e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.240882103477523e-4
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

DP
type: SiteQuality
SIO_000300: 2.654742e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

FS
type: SiteQuality
SIO_000300: 1.277e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 2458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9092
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 34
allele frequency: 3.295212250436131e-3
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.04649900488511e-5
allele num: 66324
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597852441981296e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.199e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 2.656401e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507431637975218e-5
allele num: 66338
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 2.655216e6

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.537158189876089e-5
allele num: 66338
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.655216e6

QD
type: SiteQuality
SIO_000300: 1.141e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014863275950436e-5
allele num: 66338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 59
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9277
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GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01331886940276e-5
allele num: 66372
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

DP
type: SiteQuality
SIO_000300: 2.656141e6

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.137e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.708e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817520901490367e-4
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 1.217e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

FS
type: SiteQuality
SIO_000300: 2.446e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

DP
type: SiteQuality
SIO_000300: 2.656379e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

FS
type: SiteQuality
SIO_000300: 2.569e0

DP
type: SiteQuality
SIO_000300: 2.656843e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.464e0

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.10824323103334e-4
allele num: 66406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.283e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.657814e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.959e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 3.512e0

MQRankSum
type: SiteQuality
SIO_000300: -2.442e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 2.656983e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.722e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.247e-1

QD
type: SiteQuality
SIO_000300: 8.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 2.656474e6

FS
type: SiteQuality
SIO_000300: 1.739e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.247e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.024640780793445e-5
allele num: 66394
num of homozygotes: 0

Other
type: Population
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allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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SIO_000300: -2.232e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0