12-25699525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25699525
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25699525
    reference: chr 12
allele count: 1
allele frequency: 1.183992422448496e-5
allele num: 84460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.173-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.173-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.311-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-44-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-19636C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.173-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.248-37C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.311-37C>T
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7948
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

12-25699529-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25699529
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25699529
    reference: chr 12
allele count: 2
allele frequency: 2.45935909102088e-5
allele num: 81322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.311-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.173-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.311-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.173-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.248-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-19640A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.173-41A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-44-41A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9718
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22791
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4890
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19599
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-25699533-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25699533
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25699533
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 77160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.248-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-44-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.173-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.173-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.173-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.311-45A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-19644A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.311-45A>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

12-25702213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702213
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702213
    reference: chr 12
allele count: 1
allele frequency: 1.691818366380186e-5
allele num: 59108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+47A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2725A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22324A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7820
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

12-25702227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702227
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702227
    reference: chr 12
allele count: 2
allele frequency: 3.199488081906895e-5
allele num: 62510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+33T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2739T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+33T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+33T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+33T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+33T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22338T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+33T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+33T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-25702240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702240
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702240
    reference: chr 12
allele count: 1
allele frequency: 1.334009231343881e-5
allele num: 74962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+20C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+20C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+20C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+20C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+20C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22351C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+20C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2752C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+20C>T
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

12-25702242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702242
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702242
    reference: chr 12
allele count: 21
allele frequency: 2.679938744257274e-4
allele num: 78360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2754C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+18C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+18C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+18C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22353C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+18C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+18C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+18C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+18C>T
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20003
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

12-25702242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702242
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702242
    reference: chr 12
allele count: 3
allele frequency: 3.828483920367534e-5
allele num: 78360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+18C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+18C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+18C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22353C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+18C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2754C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+18C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+18C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+18C>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20317
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20003
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

12-25702245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702245
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702245
    reference: chr 12
allele count: 2
allele frequency: 2.407086462545735e-5
allele num: 83088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+15G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22356G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2757G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

12-25702248-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702248
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702248
    reference: chr 12
allele count: 4
allele frequency: 4.514061300952467e-5
allele num: 88612
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+12A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22359A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+12A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+12A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+12A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+12A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+12A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2760A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+12A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31953
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

12-25702257-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702257
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702257
    reference: chr 12
allele count: 1
allele frequency: 9.737098344693281e-6
allele num: 102700
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-172+3A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.247+3A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.310+3A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.172+3A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2769A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.172+3A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22368A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.172+3A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.310+3A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
hgvs: c.310+3A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-25702263-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702263
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702263
    reference: chr 12
allele count: 2
allele frequency: 1.826450658435462e-5
allele num: 109502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.244T>C
  hgvsp: ENST00000282881.6:c.244T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.169T>C
  hgvsp: ENST00000540106.1:c.169T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.307T>C
  hgvsp: ENST00000458174.2:c.307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.169T>C
  hgvsp: ENST00000542224.1:c.169T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.169T>C
  hgvsp: ENST00000538178.1:c.169T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22374T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.307T>C
  hgvsp: ENST00000413632.2:c.307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2775T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-175T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu103Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

12-25702267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702267
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702267
    reference: chr 12
allele count: 1
allele frequency: 8.913768206371561e-6
allele num: 112186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.165C>T
  hgvsp: ENST00000542224.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.165C>T
  hgvsp: ENST00000540106.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.240C>T
  hgvsp: ENST00000282881.6:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.165C>T
  hgvsp: ENST00000538178.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-179C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.303C>T
  hgvsp: ENST00000413632.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22378C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.303C>T
  hgvsp: ENST00000458174.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2779C>T
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn101Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-25702275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702275
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702275
    reference: chr 12
allele count: 2
allele frequency: 1.731721677691961e-5
allele num: 115492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.157G>A
  hgvsp: ENSP00000445242.1:p.Val53Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.232G>A
  hgvsp: ENSP00000282881.6:p.Val78Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2787G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.295G>A
  hgvsp: ENSP00000393150.2:p.Val99Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-187G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22386G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.157G>A
  hgvsp: ENSP00000442871.1:p.Val53Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.295G>A
  hgvsp: ENSP00000407353.2:p.Val99Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.157G>A
  hgvsp: ENSP00000443387.1:p.Val53Met
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val99Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-25702280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702280
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702280
    reference: chr 12
allele count: 3
allele frequency: 2.565374288108635e-5
allele num: 116942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22391C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.290C>G
  hgvsp: ENSP00000393150.2:p.Ser97Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.227C>G
  hgvsp: ENSP00000282881.6:p.Ser76Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.152C>G
  hgvsp: ENSP00000445242.1:p.Ser51Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-192C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.290C>G
  hgvsp: ENSP00000407353.2:p.Ser97Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.152C>G
  hgvsp: ENSP00000442871.1:p.Ser51Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.152C>G
  hgvsp: ENSP00000443387.1:p.Ser51Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2792C>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser97Cys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-25702286-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702286
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702286
    reference: chr 12
allele count: 1
allele frequency: 8.472709403012895e-6
allele num: 118026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22397G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.221G>C
  hgvsp: ENSP00000282881.6:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.146G>C
  hgvsp: ENSP00000443387.1:p.Ser49Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.146G>C
  hgvsp: ENSP00000445242.1:p.Ser49Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.284G>C
  hgvsp: ENSP00000407353.2:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-198G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2798G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.284G>C
  hgvsp: ENSP00000393150.2:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.146G>C
  hgvsp: ENSP00000442871.1:p.Ser49Thr
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser95Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

12-25702291-T-TTTAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702291
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702296
    reference: chr 12
allele count: 1
allele frequency: 8.418783990840363e-6
allele num: 118782
alternate allele: TTTAGA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.215_216insTCTAA
  hgvsp: ENSP00000282881.6:p.Gly73LeufsTer28
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.278_279insTCTAA
  hgvsp: ENSP00000393150.2:p.Gly94LeufsTer28
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.140_141insTCTAA
  hgvsp: ENSP00000445242.1:p.Gly48LeufsTer28
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.140_141insTCTAA
  hgvsp: ENSP00000443387.1:p.Gly48LeufsTer?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.278_279insTCTAA
  hgvsp: ENSP00000407353.2:p.Gly94LeufsTer28
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2804_59-2803insTCTAA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.140_141insTCTAA
  hgvsp: ENSP00000442871.1:p.Gly48LeufsTer28
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-204_-203insTCTAA
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly94LeufsTer28
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

12-25702293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702293
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702293
    reference: chr 12
allele count: 1
allele frequency: 8.400537634408602e-6
allele num: 119040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22404G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.277G>A
  hgvsp: ENSP00000393150.2:p.Val93Ile
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.139G>A
  hgvsp: ENSP00000445242.1:p.Val47Ile
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.277G>A
  hgvsp: ENSP00000407353.2:p.Val93Ile
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.139G>A
  hgvsp: ENSP00000442871.1:p.Val47Ile
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.214G>A
  hgvsp: ENSP00000282881.6:p.Val72Ile
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2805G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.139G>A
  hgvsp: ENSP00000443387.1:p.Val47Ile
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-205G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val93Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

12-25702297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702297
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702297
    reference: chr 12
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.135T>C
  hgvsp: ENST00000542224.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.210T>C
  hgvsp: ENST00000282881.6:c.210T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.135T>C
  hgvsp: ENST00000538178.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.273T>C
  hgvsp: ENST00000413632.2:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2809T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-209T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22408T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.273T>C
  hgvsp: ENST00000458174.2:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.135T>C
  hgvsp: ENST00000540106.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala91Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-25702305-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702305
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702305
    reference: chr 12
allele count: 1
allele frequency: 8.337363058811759e-6
allele num: 119942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.265T>C
  hgvsp: ENSP00000393150.2:p.Ser89Pro
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.127T>C
  hgvsp: ENSP00000443387.1:p.Ser43Pro
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2817T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22416T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-217T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.127T>C
  hgvsp: ENSP00000442871.1:p.Ser43Pro
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.265T>C
  hgvsp: ENSP00000407353.2:p.Ser89Pro
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.202T>C
  hgvsp: ENSP00000282881.6:p.Ser68Pro
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.127T>C
  hgvsp: ENSP00000445242.1:p.Ser43Pro
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser89Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

12-25702310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702310
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702310
    reference: chr 12
allele count: 1
allele frequency: 8.322375538873816e-6
allele num: 120158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.260T>C
  hgvsp: ENSP00000393150.2:p.Leu87Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.197T>C
  hgvsp: ENSP00000282881.6:p.Leu66Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-222T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.122T>C
  hgvsp: ENSP00000443387.1:p.Leu41Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22421T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2822T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.260T>C
  hgvsp: ENSP00000407353.2:p.Leu87Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.122T>C
  hgvsp: ENSP00000442871.1:p.Leu41Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.122T>C
  hgvsp: ENSP00000445242.1:p.Leu41Ser
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu87Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

12-25702325-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702325
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702325
    reference: chr 12
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-237C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.107C>G
  hgvsp: ENSP00000443387.1:p.Ser36Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.245C>G
  hgvsp: ENSP00000393150.2:p.Ser82Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.107C>G
  hgvsp: ENSP00000442871.1:p.Ser36Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.245C>G
  hgvsp: ENSP00000407353.2:p.Ser82Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.107C>G
  hgvsp: ENSP00000445242.1:p.Ser36Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2837C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.182C>G
  hgvsp: ENSP00000282881.6:p.Ser61Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22436C>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser82Ter
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

12-25702327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702327
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702327
    reference: chr 12
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.180A>G
  hgvsp: ENSP00000282881.6:p.Ile60Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-239A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.243A>G
  hgvsp: ENSP00000407353.2:p.Ile81Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.105A>G
  hgvsp: ENSP00000442871.1:p.Ile35Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.105A>G
  hgvsp: ENSP00000443387.1:p.Ile35Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.105A>G
  hgvsp: ENSP00000445242.1:p.Ile35Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.243A>G
  hgvsp: ENSP00000393150.2:p.Ile81Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2839A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22438A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53534
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile81Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-25702329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702329
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702329
    reference: chr 12
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.103A>G
  hgvsp: ENSP00000443387.1:p.Ile35Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.103A>G
  hgvsp: ENSP00000442871.1:p.Ile35Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-241A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.103A>G
  hgvsp: ENSP00000445242.1:p.Ile35Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22440A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.178A>G
  hgvsp: ENSP00000282881.6:p.Ile60Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.241A>G
  hgvsp: ENSP00000407353.2:p.Ile81Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.241A>G
  hgvsp: ENSP00000393150.2:p.Ile81Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2841A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile81Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-25702329-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702329
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702329
    reference: chr 12
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2841A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.241A>C
  hgvsp: ENSP00000407353.2:p.Ile81Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.103A>C
  hgvsp: ENSP00000445242.1:p.Ile35Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.178A>C
  hgvsp: ENSP00000282881.6:p.Ile60Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.241A>C
  hgvsp: ENSP00000393150.2:p.Ile81Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22440A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.103A>C
  hgvsp: ENSP00000442871.1:p.Ile35Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.103A>C
  hgvsp: ENSP00000443387.1:p.Ile35Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-241A>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile81Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

12-25702330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702330
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702330
    reference: chr 12
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.240T>C
  hgvsp: ENST00000458174.2:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2842T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.240T>C
  hgvsp: ENST00000413632.2:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22441T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.177T>C
  hgvsp: ENST00000282881.6:c.177T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.102T>C
  hgvsp: ENST00000540106.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-242T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.102T>C
  hgvsp: ENST00000538178.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.102T>C
  hgvsp: ENST00000542224.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr80Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/12-25702342-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702342
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702342
    reference: chr 12
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.165T>G
  hgvsp: ENSP00000282881.6:p.Ile55Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.228T>G
  hgvsp: ENSP00000407353.2:p.Ile76Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.228T>G
  hgvsp: ENSP00000393150.2:p.Ile76Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.90T>G
  hgvsp: ENSP00000442871.1:p.Ile30Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-254T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22453T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.90T>G
  hgvsp: ENSP00000445242.1:p.Ile30Met
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2854T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.90T>G
  hgvsp: ENSP00000443387.1:p.Ile30Met
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4175
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile76Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

12-25702344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702344
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702344
    reference: chr 12
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.226A>G
  hgvsp: ENSP00000407353.2:p.Ile76Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.163A>G
  hgvsp: ENSP00000282881.6:p.Ile55Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-256A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.88A>G
  hgvsp: ENSP00000442871.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22455A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.226A>G
  hgvsp: ENSP00000393150.2:p.Ile76Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2856A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.88A>G
  hgvsp: ENSP00000445242.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.88A>G
  hgvsp: ENSP00000443387.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile76Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-25702347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702347
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702347
    reference: chr 12
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.223C>T
  hgvsp: ENSP00000407353.2:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.223C>T
  hgvsp: ENSP00000393150.2:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.85C>T
  hgvsp: ENSP00000443387.1:p.Gln29Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.160C>T
  hgvsp: ENSP00000282881.6:p.Gln54Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.85C>T
  hgvsp: ENSP00000442871.1:p.Gln29Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-259C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.85C>T
  hgvsp: ENSP00000445242.1:p.Gln29Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22458C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2859C>T
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln75Ter
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

12-25702350-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702350
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702350
    reference: chr 12
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.157C>T
  hgvsp: ENSP00000282881.6:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.82C>T
  hgvsp: ENSP00000445242.1:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.220C>T
  hgvsp: ENSP00000407353.2:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.220C>T
  hgvsp: ENSP00000393150.2:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22461C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2862C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.82C>T
  hgvsp: ENSP00000442871.1:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-262C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.82C>T
  hgvsp: ENSP00000443387.1:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro74Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

12-25702371-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702371
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702371
    reference: chr 12
allele count: 2
allele frequency: 1.649811096629436e-5
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22482C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.61C>G
  hgvsp: ENSP00000443387.1:p.Leu21Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.199C>G
  hgvsp: ENSP00000393150.2:p.Leu67Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.199C>G
  hgvsp: ENSP00000407353.2:p.Leu67Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2883C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.61C>G
  hgvsp: ENSP00000442871.1:p.Leu21Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-283C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.136C>G
  hgvsp: ENSP00000282881.6:p.Leu46Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.61C>G
  hgvsp: ENSP00000445242.1:p.Leu21Val
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu67Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-25702373-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702373
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702373
    reference: chr 12
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.134C>T
  hgvsp: ENSP00000282881.6:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.59C>T
  hgvsp: ENSP00000442871.1:p.Pro20Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.197C>T
  hgvsp: ENSP00000393150.2:p.Pro66Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-285C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22484C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.59C>T
  hgvsp: ENSP00000445242.1:p.Pro20Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2885C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.197C>T
  hgvsp: ENSP00000407353.2:p.Pro66Leu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.59C>T
  hgvsp: ENSP00000443387.1:p.Pro20Leu
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro66Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

12-25702390-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702390
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702390
    reference: chr 12
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.180A>C
  hgvsp: ENST00000413632.2:c.180A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-302A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.42A>C
  hgvsp: ENST00000538178.1:c.42A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.42A>C
  hgvsp: ENST00000542224.1:c.42A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.42A>C
  hgvsp: ENST00000540106.1:c.42A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.117A>C
  hgvsp: ENST00000282881.6:c.117A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.180A>C
  hgvsp: ENST00000458174.2:c.180A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22501A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2902A>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser60Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-25702391-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702391
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702391
    reference: chr 12
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22502C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.179C>G
  hgvsp: ENSP00000407353.2:p.Ser60Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.41C>G
  hgvsp: ENSP00000445242.1:p.Ser14Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-303C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.41C>G
  hgvsp: ENSP00000442871.1:p.Ser14Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.116C>G
  hgvsp: ENSP00000282881.6:p.Ser39Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.179C>G
  hgvsp: ENSP00000393150.2:p.Ser60Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2903C>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.41C>G
  hgvsp: ENSP00000443387.1:p.Ser14Ter
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser60Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

12-25702400-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702400
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702400
    reference: chr 12
allele count: 2
allele frequency: 1.648804616652927e-5
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.32T>C
  hgvsp: ENSP00000443387.1:p.Leu11Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.170T>C
  hgvsp: ENSP00000393150.2:p.Leu57Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.107T>C
  hgvsp: ENSP00000282881.6:p.Leu36Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.32T>C
  hgvsp: ENSP00000445242.1:p.Leu11Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22511T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.32T>C
  hgvsp: ENSP00000442871.1:p.Leu11Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-312T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.170T>C
  hgvsp: ENSP00000407353.2:p.Leu57Ser
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2912T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu57Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/12-25702424-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702424
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702424
    reference: chr 12
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.146G>T
  hgvsp: ENSP00000393150.2:p.Gly49Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-336G>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.8G>T
  hgvsp: ENSP00000443387.1:p.Gly3Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2936G>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.8G>T
  hgvsp: ENSP00000442871.1:p.Gly3Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22535G>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.146G>T
  hgvsp: ENSP00000407353.2:p.Gly49Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.8G>T
  hgvsp: ENSP00000445242.1:p.Gly3Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.83G>T
  hgvsp: ENSP00000282881.6:p.Gly28Val
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly49Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

12-25702430-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702430
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702430
    reference: chr 12
allele count: 7
allele frequency: 5.775291652228438e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.2T>A
  hgvsp: ENSP00000445242.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2942T>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.140T>A
  hgvsp: ENSP00000393150.2:p.Met47Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-342T>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.140T>A
  hgvsp: ENSP00000407353.2:p.Met47Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.2T>A
  hgvsp: ENSP00000442871.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.77T>A
  hgvsp: ENSP00000282881.6:p.Met26Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.2T>A
  hgvsp: ENSP00000443387.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22541T>A
  variant of: http://identifiers.org/hgnc/26683
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

12-25702431-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702431
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702431
    reference: chr 12
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2943A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.139A>G
  hgvsp: ENSP00000393150.2:p.Met47Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.1A>G
  hgvsp: ENSP00000445242.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.1A>G
  hgvsp: ENSP00000443387.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22542A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.1A>G
  hgvsp: ENSP00000442871.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.76A>G
  hgvsp: ENSP00000282881.6:p.Met26Val
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-343A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.139A>G
  hgvsp: ENSP00000407353.2:p.Met47Val
  variant of: http://identifiers.org/hgnc/26683
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-25702435-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702435
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702436
    reference: chr 12
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-348dupC
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-5dupC
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.71dupC
  hgvsp: ENSP00000282881.6:p.Met26AspfsTer27
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2948dupC
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.134dupC
  hgvsp: ENSP00000407353.2:p.Met47AspfsTer27
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-5dupC
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.134dupC
  hgvsp: ENSP00000393150.2:p.Met47AspfsTer27
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-5dupC
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22547dupC
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met47AspfsTer27
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-25702451-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702451
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702451
    reference: chr 12
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-20T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-20T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.56T>G
  hgvsp: ENSP00000282881.6:p.Leu19Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-363T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.119T>G
  hgvsp: ENSP00000393150.2:p.Leu40Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22562T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.119T>G
  hgvsp: ENSP00000407353.2:p.Leu40Ter
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-20T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2963T>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu40Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

12-25702457-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702457
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702457
    reference: chr 12
allele count: 2
allele frequency: 1.653548515113433e-5
allele num: 120952
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.113A>G
  hgvsp: ENSP00000393150.2:p.Tyr38Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22568A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.113A>G
  hgvsp: ENSP00000407353.2:p.Tyr38Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.50A>G
  hgvsp: ENSP00000282881.6:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2969A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-369A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr38Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

12-25702458-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702458
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702458
    reference: chr 12
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.112T>C
  hgvsp: ENSP00000407353.2:p.Tyr38His
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.49T>C
  hgvsp: ENSP00000282881.6:p.Tyr17His
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2970T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-370T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.112T>C
  hgvsp: ENSP00000393150.2:p.Tyr38His
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22569T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr38His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

12-25702471-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702471
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702471
    reference: chr 12
allele count: 2
allele frequency: 1.660054117764239e-5
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.99C>A
  hgvsp: ENSP00000393150.2:p.Asp33Glu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-40C>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.99C>A
  hgvsp: ENSP00000407353.2:p.Asp33Glu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22582C>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-40C>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.36C>A
  hgvsp: ENSP00000282881.6:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-40C>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-383C>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2983C>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp33Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS

12-25702473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702473
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702473
    reference: chr 12
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2985G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.97G>A
  hgvsp: ENSP00000407353.2:p.Asp33Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.34G>A
  hgvsp: ENSP00000282881.6:p.Asp12Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.97G>A
  hgvsp: ENSP00000393150.2:p.Asp33Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-385G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22584G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp33Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-25702475-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702475
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702475
    reference: chr 12
allele count: 1
allele frequency: 8.338614455822021e-6
allele num: 119924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.95A>G
  hgvsp: ENSP00000407353.2:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22586A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-387A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2987A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.95A>G
  hgvsp: ENSP00000393150.2:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.32A>G
  hgvsp: ENSP00000282881.6:p.Glu11Gly
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu32Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-25702476-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702476
    reference: chr 12
allele count: 1
allele frequency: 8.351009637065121e-6
allele num: 119746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.94G>C
  hgvsp: ENSP00000393150.2:p.Glu32Gln
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-388G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.31G>C
  hgvsp: ENSP00000282881.6:p.Glu11Gln
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.94G>C
  hgvsp: ENSP00000407353.2:p.Glu32Gln
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2988G>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22587G>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48145
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu32Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-25702478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702478
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702478
    reference: chr 12
allele count: 998
allele frequency: 8.407750631844988e-3
allele num: 118700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.29G>A
  hgvsp: ENSP00000282881.6:p.Arg10Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.92G>A
  hgvsp: ENSP00000407353.2:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.92G>A
  hgvsp: ENSP00000393150.2:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-390G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22589G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-2990G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 37037
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 2.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 3.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg31Lys
num of homozygotes: 7
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/12-25702488-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702488
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702489
    reference: chr 12
allele count: 1
allele frequency: 9.358213704168149e-6
allele num: 106858
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-9dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22600dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-9dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-9dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-9dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3001dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-9dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-9dupT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-9dupT
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25489
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-25702488-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702488
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702487
    reference: chr 12
allele count: 1
allele frequency: 9.358213704168149e-6
allele num: 106858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-9delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22600delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-9delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-9delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-9delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-9delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3001delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-9delT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-9delT
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: CA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-25702488-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702488
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702486
    reference: chr 12
allele count: 5
allele frequency: 4.679106852084074e-5
allele num: 106858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-10_-392-9delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-10_90-9delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-10_-49-9delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-10_90-9delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3002_59-3001delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-10_27-9delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-10_-49-9delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22601_-82-22600delTT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-10_-49-9delTT
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: CAA
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

12-25702496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702496
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702496
    reference: chr 12
allele count: 1
allele frequency: 1.529753709652746e-5
allele num: 65370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22607T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-16T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3008T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13864
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-25702499-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702499
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702498
    reference: chr 12
allele count: 10
allele frequency: 1.800309653260361e-4
allele num: 55546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3012delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-20delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-20delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-20delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-20delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-20delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-20delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22611delA
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-20delA
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17364
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AT
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

12-25702500-T-TATAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702500
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702504
    reference: chr 12
allele count: 1
allele frequency: 1.792692983399663e-5
allele num: 55782
alternate allele: TATAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-24_-392-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3016_59-3013dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-24_27-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-24_90-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-24_90-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-24_-49-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-24_-49-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-24_-49-21dupTTAT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22615_-82-22612dupTTAT
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-25702501-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702501
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702501
    reference: chr 12
allele count: 1
allele frequency: 2.210726444709732e-5
allele num: 45234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-21T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22612T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3013T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16386
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-25702508-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702508
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702508
    reference: chr 12
allele count: 1
allele frequency: 2.460629921259842e-5
allele num: 40640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3020T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-28T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22619T>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-25702518-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702518
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702518
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 29648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-38T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-38T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-38T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3030T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-38T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-38T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-38T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22629T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-38T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16916
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

12-25702522-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25702522
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25702522
    reference: chr 12
allele count: 330
allele frequency: 1.263206247129077e-2
allele num: 26124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-42A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-392-42A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-22633A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.27-42A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-42A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.90-42A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-3034A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-42A>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.90-42A>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18278
  bin: 7.5e0
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19345
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 1.25e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 11348
  bin: 2.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 17227
  bin: 7.5e0
  variant carriers: 17
num of homozygotes: 4
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

12-25705757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705757
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705757
    reference: chr 12
allele count: 18
allele frequency: 8.883624518803672e-4
allele num: 20262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+246G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3277G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.89+48G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+342G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3277G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6269G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3277G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.89+48G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25868G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16396
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

12-25705773-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705773
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705771
    reference: chr 12
allele count: 1
allele frequency: 4.901960784313725e-5
allele num: 20400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25886_-82-25885delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.89+30_89+31delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3295_-49-3294delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3295_-49-3294delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+228_26+229delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.89+30_89+31delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+324_-393+325delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3295_-49-3294delAG
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6287_59-6286delAG
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: ACT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

12-25705804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705804
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705804
    reference: chr 12
allele count: 111
allele frequency: 5.274662611670785e-3
allele num: 21044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3324G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6316G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3324G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+295G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.89+1G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3324G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.89+1G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25915G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+199G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25434
  bin: 2.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 2
hgvs: c.89+1G>A
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-25705825-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705825
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705825
    reference: chr 12
allele count: 3
allele frequency: 1.393016344725111e-4
allele num: 21536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.69T>G
  hgvsp: ENSP00000393150.2:p.Asp23Glu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3345T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+274T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.69T>G
  hgvsp: ENSP00000407353.2:p.Asp23Glu
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3345T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+178T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3345T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25936T>G
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6337T>G
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp23Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-25705827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705827
    reference: chr 12
allele count: 1
allele frequency: 4.629629629629629e-5
allele num: 21600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+176G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3347G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6339G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3347G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+272G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25938G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.67G>A
  hgvsp: ENSP00000407353.2:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.67G>A
  hgvsp: ENSP00000393150.2:p.Asp23Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3347G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3974
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp23Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

12-25705836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705836
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705836
    reference: chr 12
allele count: 13
allele frequency: 5.889815150416818e-4
allele num: 22072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3356G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.58G>A
  hgvsp: ENSP00000407353.2:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+263G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3356G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3356G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6348G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.58G>A
  hgvsp: ENSP00000393150.2:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+167G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25947G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Glu20Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

12-25705837-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705837
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705837
    reference: chr 12
allele count: 1
allele frequency: 4.511820970943873e-5
allele num: 22164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3357T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+166T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.57T>C
  hgvsp: ENST00000413632.2:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.57T>C
  hgvsp: ENST00000458174.2:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3357T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3357T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+262T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25948T>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6349T>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His19His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

12-25705840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705840
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705840
    reference: chr 12
allele count: 2
allele frequency: 8.933357155619081e-5
allele num: 22388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3360C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6352C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.54C>T
  hgvsp: ENST00000413632.2:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+163C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+259C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3360C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3360C>T
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.54C>T
  hgvsp: ENST00000458174.2:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25951C>T
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32737
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31284
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val18Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-25705848-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705848
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705848
    reference: chr 12
allele count: 1
allele frequency: 4.350095702105447e-5
allele num: 22988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3368A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.46A>C
  hgvsp: ENSP00000393150.2:p.Asn16His
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.46A>C
  hgvsp: ENSP00000407353.2:p.Asn16His
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3368A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+155A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6360A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3368A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+251A>C
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25959A>C
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn16His
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

12-25705857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705857
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705857
    reference: chr 12
allele count: 2
allele frequency: 8.291186468783683e-5
allele num: 24122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3377G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3377G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3377G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6369G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.37G>A
  hgvsp: ENSP00000407353.2:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+242G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25968G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.37G>A
  hgvsp: ENSP00000393150.2:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+146G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15040
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala13Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

12-25705861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705861
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705861
    reference: chr 12
allele count: 9
allele frequency: 3.609529156974413e-4
allele num: 24934
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.33G>A
  hgvsp: ENST00000458174.2:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3381G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3381G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+238G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+142G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.33G>A
  hgvsp: ENST00000413632.2:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3381G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25972G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6373G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25327
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20213
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3991
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Ser11Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-25705887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705887
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705887
    reference: chr 12
allele count: 20
allele frequency: 5.826147751106968e-4
allele num: 34328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3407G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.7G>A
  hgvsp: ENSP00000393150.2:p.Asp3Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3407G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+212G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.7G>A
  hgvsp: ENSP00000407353.2:p.Asp3Asn
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  hgvsc: ENST00000545543.1:c.-82-25998G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6399G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+116G>A
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3407G>A
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33137
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9348
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp3Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

12-25705900-TAGAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25705900
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 25705895
    reference: chr 12
allele count: 2
allele frequency: 4.5004500450045e-5
allele num: 44440
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407353
  ensembl transcript: ENST00000458174
  gene symbol: IFLTD1
  hgvsc: ENST00000458174.2:c.-12_-8delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000393150
  ensembl transcript: ENST00000413632
  gene symbol: IFLTD1
  hgvsc: ENST00000413632.2:c.-12_-8delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000282881
  ensembl transcript: ENST00000282881
  gene symbol: IFLTD1
  hgvsc: ENST00000282881.6:c.26+98_26+102delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443387
  ensembl transcript: ENST00000542224
  gene symbol: IFLTD1
  hgvsc: ENST00000542224.1:c.-49-3425_-49-3421delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443596
  ensembl transcript: ENST00000545543
  gene symbol: IFLTD1
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000445242
  ensembl transcript: ENST00000540106
  gene symbol: IFLTD1
  hgvsc: ENST00000540106.1:c.-49-3425_-49-3421delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000407043
  ensembl transcript: ENST00000445693
  gene symbol: IFLTD1
  hgvsc: ENST00000445693.1:c.59-6417_59-6413delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000442871
  ensembl transcript: ENST00000538178
  gene symbol: IFLTD1
  hgvsc: ENST00000538178.1:c.-49-3425_-49-3421delTTTCT
  variant of: http://identifiers.org/hgnc/26683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152936
  ensembl protein: ENSP00000443132
  ensembl transcript: ENST00000539744
  gene symbol: IFLTD1
  hgvsc: ENST00000539744.1:c.-393+194_-393+198delTTTCT
  variant of: http://identifiers.org/hgnc/26683
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: TAGAAA

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21024
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.147674068983291e-5
allele num: 46562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.293e0

VQSLOD
type: SiteQuality
SIO_000300: -1.185e0

DP
type: SiteQuality
SIO_000300: 8.79274e5

QD
type: SiteQuality
SIO_000300: 1.773e1

GenotypeQuality
all individuals: 3737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4935
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44862
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.299241174529858e-4
allele num: 6062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.56e1

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 3.118e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 8.54126e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

VQSLOD
type: SiteQuality
SIO_000300: -9.923999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 802
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4692
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1906
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7991
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5095
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.663e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

DP
type: SiteQuality
SIO_000300: 8.34658e5

VQSLOD
type: SiteQuality
SIO_000300: -3.083e0

QD
type: SiteQuality
SIO_000300: 3.269e1

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15957
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.744591765526867e-4
allele num: 5732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.90367e5

MQ
type: SiteQuality
SIO_000300: 5.889e1

VQSLOD
type: SiteQuality
SIO_000300: -9.004e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

QD
type: SiteQuality
SIO_000300: 1.051e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 1032
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6950
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.209637357178341e-5
allele num: 32208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 7.79845e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

QD
type: SiteQuality
SIO_000300: 1.646e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.21e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 245
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21260
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.579846241164027e-5
allele num: 38762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 9.68236e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.574e0

QD
type: SiteQuality
SIO_000300: 1.174e1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeQuality
all individuals: 225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.796714579055441e-3
allele num: 11688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.263e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.031e0

QD
type: SiteQuality
SIO_000300: 1.282e1

DP
type: SiteQuality
SIO_000300: 1.000336e6

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.367748907117246e-5
allele num: 40718
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.031e0

DP
type: SiteQuality
SIO_000300: 1.000336e6

FS
type: SiteQuality
SIO_000300: 1.263e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

QD
type: SiteQuality
SIO_000300: 1.282e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.459010722933241e-4
allele num: 5782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12200
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -4.272e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
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SIO_000300: 8.529999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.646e0

DP
type: SiteQuality
SIO_000300: 1.050678e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.01002004008016e-4
allele num: 7984
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12850
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.103283e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.952169076751947e-5
allele num: 14384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.168e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.236926e6

MQRankSum
type: SiteQuality
SIO_000300: -1.491e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.118e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.36304018833025e-5
allele num: 59470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.676e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.302349e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.767e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.480041472265422e-5
allele num: 15432
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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FS
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 1.329635e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 1.265822784810127e-4
allele num: 15800
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
type: Population
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European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
type: Population
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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African
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allele frequency: 9.912767644726408e-5
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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MQRankSum
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SIO_000300: -1.11e0

FS
type: SiteQuality
SIO_000300: 5.334e0

DP
type: SiteQuality
SIO_000300: 1.393679e6

ReadPosRankSum
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SIO_000300: 1.77e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65314
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.850275807722617e-5
allele num: 10152
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

VQSLOD
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QD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
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SIO_000300: -1.12e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 888
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Latino
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allele count: 1
allele frequency: 8.907892392659897e-5
allele num: 11226
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.923e0

DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -4.65e-1

ClippingRankSum
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SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11266
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
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South Asian
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allele num: 16272
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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ClippingRankSum
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SIO_000300: -5.36e-1

QD
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MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.516070345664039e-5
allele num: 65960
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East Asian
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South Asian
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Other
type: Population
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DP
type: SiteQuality
SIO_000300: 1.417143e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Other
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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MQ
type: SiteQuality
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VQSLOD
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

DP
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SIO_000300: 1.428445e6

ClippingRankSum
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SIO_000300: -4.04e-1

FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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SIO_000300: 1.223e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
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SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 2.665e0

VQSLOD
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ClippingRankSum
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SIO_000300: 1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.428907e6

InbreedingCoeff
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SIO_000300: 1.03e-2

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

DP
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SIO_000300: 1.433561e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.433995e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.11e0

ClippingRankSum
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SIO_000300: -1.32e0

BaseQRankSum
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SIO_000300: -3.923e0

DP
type: SiteQuality
SIO_000300: 1.435251e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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DP
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ClippingRankSum
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QD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 6.063545961678389e-5
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Latino
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allele num: 11554
num of homozygotes: 0

Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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MQ
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DP
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FS
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
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QD
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DP
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FS
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
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SIO_000300: 1.5e0

QD
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ClippingRankSum
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SIO_000300: 4.02e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

DP
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SIO_000300: 1.440469e6

FS
type: SiteQuality
SIO_000300: 1.472e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.45e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.425e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.143e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.017e1

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.053e0

DP
type: SiteQuality
SIO_000300: 1.44003e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.098102730217492e-4
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

DP
type: SiteQuality
SIO_000300: 1.439827e6

MQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.439531e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.157139551029854e-4
allele num: 8642
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

DP
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele num: 66470
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South Asian
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European (Finnish)
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Other
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BaseQRankSum
type: SiteQuality
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.214329083181542e-4
allele num: 16470
num of homozygotes: 0

Other
type: Population
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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FS
type: SiteQuality
SIO_000300: 4.358e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
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SIO_000300: 4.31e0

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.431905e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.128e-1

ReadPosRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 2.48e0

InbreedingCoeff
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SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.018e1

MQ
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SIO_000300: 5.956e1

BaseQRankSum
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SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

DP
type: SiteQuality
SIO_000300: 1.431231e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511304558094547e-5
allele num: 66168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.411615e6

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 3.996e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515518913676043e-5
allele num: 65984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

FS
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 4.38e0

DP
type: SiteQuality
SIO_000300: 1.401178e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.333e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3807
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518879674352198e-5
allele num: 65838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

QD
type: SiteQuality
SIO_000300: 1.465e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.389108e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520958812435359e-5
allele num: 65748
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 990

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 799
allele frequency: 1.225197043579599e-2
allele num: 65214
num of homozygotes: 6

South Asian
type: Population
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allele frequency: 3.846631095669438e-3
allele num: 16118
num of homozygotes: 0

Latino
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allele frequency: 4.314899612539626e-3
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
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African
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allele count: 18
allele frequency: 1.796048692875673e-3
allele num: 10022
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European (Finnish)
type: Population
allele count: 62
allele frequency: 9.454101860323269e-3
allele num: 6558
num of homozygotes: 1

Other
type: Population
allele count: 8
allele frequency: 8.968609865470852e-3
allele num: 892
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 804
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 1.71650245459851e-5
allele num: 58258
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.71650245459851e-5
allele num: 58258
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 5
allele frequency: 5.925574780753733e-4
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

DP
type: SiteQuality
SIO_000300: 1.175468e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 1.089e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.062e1

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.127418765972983e-5
allele num: 10956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.115e1

DP
type: SiteQuality
SIO_000300: 7.42547e5

MQRankSum
type: SiteQuality
SIO_000300: -2.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 1461
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28876
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 3.930817610062893e-3
allele num: 2544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.077e1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

DP
type: SiteQuality
SIO_000300: 6.21679e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.43e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

FS
type: SiteQuality
SIO_000300: 1.147e0

MQ
type: SiteQuality
SIO_000300: 5.993e1

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 1170
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

FS
type: SiteQuality
SIO_000300: 5.682e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.354e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 2.927e1

DP
type: SiteQuality
SIO_000300: 6.19297e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

GenotypeQuality
all individuals: 1812
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
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variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 2520
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.343293954134816e-5
allele num: 23024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1840
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.23422e5

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.93e-2

QD
type: SiteQuality
SIO_000300: 1.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17341
bin: 7.5e0
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GenotypeQuality
all individuals: 1616
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
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GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.898599000685804e-5
allele num: 20414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.22e-2

DP
type: SiteQuality
SIO_000300: 4.73781e5

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.803e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

DP
type: SiteQuality
SIO_000300: 4.05454e5

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.931999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.85e-2

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 580
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 784
bin: 9.75e1
variant carriers: 341

GenotypeQuality
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bin: 9.25e1
variant carriers: 27

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 5032
bin: 1.25e1
variant carriers: 12

GenotypeQuality
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bin: 8.25e1
variant carriers: 22

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2381
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1983
bin: 2.75e1
variant carriers: 13

GenotypeQuality
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bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1212
bin: 3.75e1
variant carriers: 5

GenotypeQuality
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bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 72
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 22

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.278772378516624e-3
allele num: 1564
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 8.429118773946359e-3
allele num: 2610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 1.081465108935901e-2
allele num: 12668
num of homozygotes: 1

African
type: Population
allele count: 102
allele frequency: 5.466237942122187e-2
allele num: 1866
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 4.347826086956522e-3
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 66
allele frequency: 1.026438569206843e-2
allele num: 6430
num of homozygotes: 2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

DP
type: SiteQuality
SIO_000300: 3.88585e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

QD
type: SiteQuality
SIO_000300: 1.751e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 353
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
all individuals: 409
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GenotypeQuality
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GenotypeQuality
all individuals: 143
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 285
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GenotypeQuality
all individuals: 1535
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 2.123705866737457e-3
allele num: 7534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.230649118893598e-4
allele num: 8966
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.955e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

DP
type: SiteQuality
SIO_000300: 7.97951e5

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.445086705202312e-3
allele num: 692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 8.12332e5

QD
type: SiteQuality
SIO_000300: 1.959e1

MQ
type: SiteQuality
SIO_000300: 5.997e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 1.0531e1

VQSLOD
type: SiteQuality
SIO_000300: -1.188e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.99e-2

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 6

GenotypeQuality
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bin: 2.25e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 15

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4025
bin: 9.75e1
variant carriers: 112

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 5.323772272924816e-3
allele num: 9204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

South Asian
type: Population
allele count: 54
allele frequency: 6.835443037974683e-3
allele num: 7900
num of homozygotes: 1

African
type: Population
allele count: 7
allele frequency: 2.77337559429477e-3
allele num: 2524
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.0e-3
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.65105e5

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.128668171557562e-3
allele num: 2658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.109e0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.128e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.578e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 9.03609e5

GenotypeQuality
all individuals: 1084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 4440
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variant carriers: 0

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.258811681772407e-4
allele num: 7944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -1.249e0

DP
type: SiteQuality
SIO_000300: 9.08601e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.769e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 2.455e0

VQSLOD
type: SiteQuality
SIO_000300: -2.301e0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31553
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GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 1

GenotypeQuality
all individuals: 635
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GenotypeQuality
all individuals: 3858
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 340
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GenotypeQuality
all individuals: 1097
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 563
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 3980
bin: 9.75e1
variant carriers: 12

African
type: Population
allele count: 13
allele frequency: 4.679625629949604e-3
allele num: 2778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.36278e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

QD
type: SiteQuality
SIO_000300: 1.285e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

GenotypeQuality
all individuals: 3883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
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GenotypeQuality
all individuals: 904
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GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 31424
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GenotypeQuality
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GenotypeQuality
all individuals: 1412
bin: 2.5e0
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GenotypeQuality
all individuals: 3978
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GenotypeQuality
all individuals: 1104
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 161
bin: 2.75e1
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.556187766714083e-4
allele num: 2812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 9.39521e5

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 8.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.469999999999999e-2

GenotypeQuality
all individuals: 710
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 3947
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 940
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 3981
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 476
bin: 7.25e1
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GenotypeQuality
all individuals: 1109
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.502502502502502e-4
allele num: 7992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.582e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

DP
type: SiteQuality
SIO_000300: 9.489e5

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
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GenotypeQuality
all individuals: 25
bin: 5.25e1
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GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 242
bin: 2.75e1
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GenotypeQuality
all individuals: 154
bin: 8.75e1
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 29902
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GenotypeQuality
all individuals: 11185
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 3982
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.245019920318725e-4
allele num: 8032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.041e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

FS
type: SiteQuality
SIO_000300: 2.051e0

DP
type: SiteQuality
SIO_000300: 9.73621e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.77e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 3982
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 1656
bin: 1.75e1
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GenotypeQuality
all individuals: 900
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GenotypeQuality
all individuals: 26894
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GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 1004
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.493765586034913e-3
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.083e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.07e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

DP
type: SiteQuality
SIO_000300: 1.010909e6

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeQuality
all individuals: 387
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.231223836493475e-4
allele num: 8122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.067484662576687e-3
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.5650623885918e-4
allele num: 11220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.063725490196078e-4
allele num: 3264
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.166666666666667e-3
allele num: 240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.034274e6

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

GenotypeQuality
all individuals: 4004
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 20
allele frequency: 2.263467632412856e-3
allele num: 8836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.181382e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

QD
type: SiteQuality
SIO_000300: 1.325e1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0