15-74635524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74635524
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74635524
    reference: chr 15
allele count: 1
allele frequency: 8.290086714307032e-6
allele num: 120626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.830-46C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.356-46C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.356-46C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*195-46C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.356-46C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.830-46C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

15-74635524-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74635524
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74635524
    reference: chr 15
allele count: 1
allele frequency: 8.290086714307032e-6
allele num: 120626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.356-46C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.830-46C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.356-46C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.356-46C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*195-46C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.830-46C>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5045
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

15-74635527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74635527
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74635527
    reference: chr 15
allele count: 5
allele frequency: 4.14669342666158e-5
allele num: 120578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.356-49A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.356-49A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.356-49A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.830-49A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*195-49A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.830-49A>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-74635528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74635528
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74635528
    reference: chr 15
allele count: 1
allele frequency: 8.303027283747654e-6
allele num: 120438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.356-50C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.830-50C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.830-50C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.356-50C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.356-50C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*195-50C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-74635528-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74635528
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74635528
    reference: chr 15
allele count: 4
allele frequency: 3.321210913499062e-5
allele num: 120438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.356-50C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.356-50C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.830-50C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*195-50C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.830-50C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.356-50C>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-74636079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636079
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636079
    reference: chr 15
allele count: 2
allele frequency: 1.657934876318058e-5
allele num: 120632
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.829+51C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.829+51C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.355+51C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.355+51C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*194+51C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.355+51C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-74636098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636098
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636098
    reference: chr 15
allele count: 64
allele frequency: 5.300470416749486e-4
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.829+32C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.355+32C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*194+32C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.355+32C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.829+32C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.355+32C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15786
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 587
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 9.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-74636101-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636101
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636101
    reference: chr 15
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.829+29C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.355+29C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.355+29C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.829+29C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.355+29C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*194+29C>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-74636127-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636127
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636127
    reference: chr 15
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.355+3G>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.829+3G>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.829+3G>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*194+3G>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.355+3G>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.355+3G>C
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: c.829+3G>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-74636137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636137
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636137
    reference: chr 15
allele count: 2
allele frequency: 1.650083329208125e-5
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.348C>T
  hgvsp: ENST00000419019.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.348C>T
  hgvsp: ENST00000358632.4:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.348C>T
  hgvsp: ENST00000566674.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*187C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.822C>T
  hgvsp: ENST00000268053.6:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.822C>T
  hgvsp: ENST00000435365.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8831
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe274Phe
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

15-74636145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636145
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636145
    reference: chr 15
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.814G>A
  hgvsp: ENSP00000391081.1:p.Val272Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.340G>A
  hgvsp: ENSP00000456941.1:p.Val114Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.340G>A
  hgvsp: ENSP00000351455.4:p.Val114Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.814G>A
  hgvsp: ENSP00000268053.6:p.Val272Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*179G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.340G>A
  hgvsp: ENSP00000405488.2:p.Val114Met
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4494
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val272Met
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

15-74636146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636146
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636146
    reference: chr 15
allele count: 28
allele frequency: 2.309011742974007e-4
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.339C>T
  hgvsp: ENST00000358632.4:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*178C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.813C>T
  hgvsp: ENST00000268053.6:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.813C>T
  hgvsp: ENST00000435365.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.339C>T
  hgvsp: ENST00000419019.2:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.339C>T
  hgvsp: ENST00000566674.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8844
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp271Asp
num of homozygotes: 1
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-74636159-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636159
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636159
    reference: chr 15
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.800T>G
  hgvsp: ENSP00000391081.1:p.Val267Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.326T>G
  hgvsp: ENSP00000351455.4:p.Val109Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.326T>G
  hgvsp: ENSP00000456941.1:p.Val109Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*165T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.326T>G
  hgvsp: ENSP00000405488.2:p.Val109Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.800T>G
  hgvsp: ENSP00000268053.6:p.Val267Gly
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val267Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-74636160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636160
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636160
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.325G>A
  hgvsp: ENSP00000351455.4:p.Val109Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.325G>A
  hgvsp: ENSP00000456941.1:p.Val109Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.799G>A
  hgvsp: ENSP00000268053.6:p.Val267Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.799G>A
  hgvsp: ENSP00000391081.1:p.Val267Met
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*164G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.325G>A
  hgvsp: ENSP00000405488.2:p.Val109Met
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val267Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-74636161-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636161
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636161
    reference: chr 15
allele count: 6
allele frequency: 4.944946264917255e-5
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.798T>C
  hgvsp: ENST00000435365.1:c.798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*163T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.324T>C
  hgvsp: ENST00000419019.2:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.324T>C
  hgvsp: ENST00000566674.1:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.798T>C
  hgvsp: ENST00000268053.6:c.798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.324T>C
  hgvsp: ENST00000358632.4:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 9.75e1
  variant carriers: 6
hgvs: p.His266His
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-74636163-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636163
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636163
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.322C>G
  hgvsp: ENSP00000456941.1:p.His108Asp
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*161C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.796C>G
  hgvsp: ENSP00000391081.1:p.His266Asp
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.322C>G
  hgvsp: ENSP00000351455.4:p.His108Asp
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.796C>G
  hgvsp: ENSP00000268053.6:p.His266Asp
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.322C>G
  hgvsp: ENSP00000405488.2:p.His108Asp
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His266Asp
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

15-74636168-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636168
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636168
    reference: chr 15
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.791A>G
  hgvsp: ENSP00000391081.1:p.Lys264Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.317A>G
  hgvsp: ENSP00000351455.4:p.Lys106Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.791A>G
  hgvsp: ENSP00000268053.6:p.Lys264Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.317A>G
  hgvsp: ENSP00000405488.2:p.Lys106Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.317A>G
  hgvsp: ENSP00000456941.1:p.Lys106Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*156A>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys264Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-74636192-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636192
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.767G>C
  hgvsp: ENSP00000391081.1:p.Arg256Pro
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*132G>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.293G>C
  hgvsp: ENSP00000456941.1:p.Arg98Pro
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.293G>C
  hgvsp: ENSP00000351455.4:p.Arg98Pro
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.293G>C
  hgvsp: ENSP00000405488.2:p.Arg98Pro
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.767G>C
  hgvsp: ENSP00000268053.6:p.Arg256Pro
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15847
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg256Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-74636192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636192
    reference: chr 15
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.767G>A
  hgvsp: ENSP00000268053.6:p.Arg256His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*132G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.293G>A
  hgvsp: ENSP00000405488.2:p.Arg98His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.293G>A
  hgvsp: ENSP00000351455.4:p.Arg98His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.293G>A
  hgvsp: ENSP00000456941.1:p.Arg98His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.767G>A
  hgvsp: ENSP00000391081.1:p.Arg256His
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg256His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-74636193-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636193
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636193
    reference: chr 15
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.766C>T
  hgvsp: ENSP00000391081.1:p.Arg256Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.292C>T
  hgvsp: ENSP00000456941.1:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.292C>T
  hgvsp: ENSP00000405488.2:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.292C>T
  hgvsp: ENSP00000351455.4:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.766C>T
  hgvsp: ENSP00000268053.6:p.Arg256Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*131C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8874
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg256Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

15-74636193-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636193
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636193
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.292C>G
  hgvsp: ENSP00000405488.2:p.Arg98Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.292C>G
  hgvsp: ENSP00000351455.4:p.Arg98Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.292C>G
  hgvsp: ENSP00000456941.1:p.Arg98Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.766C>G
  hgvsp: ENSP00000268053.6:p.Arg256Gly
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*131C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.766C>G
  hgvsp: ENSP00000391081.1:p.Arg256Gly
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4453
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg256Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum

15-74636202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636202
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636202
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.283G>A
  hgvsp: ENSP00000456941.1:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.283G>A
  hgvsp: ENSP00000351455.4:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*122G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.283G>A
  hgvsp: ENSP00000405488.2:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.757G>A
  hgvsp: ENSP00000268053.6:p.Asp253Asn
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.283G>A
  hgvsp: ENSP00000402064.1:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.757G>A
  hgvsp: ENSP00000391081.1:p.Asp253Asn
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp253Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

15-74636204-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636204
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636204
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.281C>A
  hgvsp: ENSP00000456941.1:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.281C>A
  hgvsp: ENSP00000405488.2:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*120C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.755C>A
  hgvsp: ENSP00000391081.1:p.Pro252Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.755C>A
  hgvsp: ENSP00000268053.6:p.Pro252Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.281C>A
  hgvsp: ENSP00000402064.1:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.281C>A
  hgvsp: ENSP00000351455.4:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro252Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-74636205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636205
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636205
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.280C>T
  hgvsp: ENSP00000456941.1:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.754C>T
  hgvsp: ENSP00000391081.1:p.Pro252Ser
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.280C>T
  hgvsp: ENSP00000405488.2:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.280C>T
  hgvsp: ENSP00000402064.1:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*119C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.754C>T
  hgvsp: ENSP00000268053.6:p.Pro252Ser
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.280C>T
  hgvsp: ENSP00000351455.4:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro252Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

15-74636206-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636206
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636206
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.279C>G
  hgvsp: ENST00000450547.1:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.753C>G
  hgvsp: ENST00000435365.1:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.279C>G
  hgvsp: ENST00000566674.1:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.279C>G
  hgvsp: ENST00000358632.4:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*118C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.279C>G
  hgvsp: ENST00000419019.2:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.753C>G
  hgvsp: ENST00000268053.6:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro251Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-74636212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636212
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636212
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.747C>T
  hgvsp: ENST00000435365.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.273C>T
  hgvsp: ENST00000358632.4:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.273C>T
  hgvsp: ENST00000419019.2:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*112C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.747C>T
  hgvsp: ENST00000268053.6:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.273C>T
  hgvsp: ENST00000566674.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.273C>T
  hgvsp: ENST00000450547.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8874
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn249Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

15-74636226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636226
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636226
    reference: chr 15
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.259G>A
  hgvsp: ENSP00000402064.1:p.Val87Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.259G>A
  hgvsp: ENSP00000351455.4:p.Val87Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.733G>A
  hgvsp: ENSP00000268053.6:p.Val245Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*98G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.259G>A
  hgvsp: ENSP00000405488.2:p.Val87Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.733G>A
  hgvsp: ENSP00000391081.1:p.Val245Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.259G>A
  hgvsp: ENSP00000456941.1:p.Val87Ile
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val245Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

15-74636227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636227
    reference: chr 15
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.732C>T
  hgvsp: ENST00000435365.1:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.258C>T
  hgvsp: ENST00000419019.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.258C>T
  hgvsp: ENST00000358632.4:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.258C>T
  hgvsp: ENST00000450547.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.258C>T
  hgvsp: ENST00000566674.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.732C>T
  hgvsp: ENST00000268053.6:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser244Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-74636230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636230
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636230
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.255C>T
  hgvsp: ENST00000419019.2:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.255C>T
  hgvsp: ENST00000358632.4:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.255C>T
  hgvsp: ENST00000450547.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.729C>T
  hgvsp: ENST00000435365.1:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.255C>T
  hgvsp: ENST00000566674.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.729C>T
  hgvsp: ENST00000268053.6:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*94C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr243Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-74636259-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636259
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636259
    reference: chr 15
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.226A>G
  hgvsp: ENSP00000351455.4:p.Ile76Val
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.226A>G
  hgvsp: ENSP00000402064.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.226A>G
  hgvsp: ENSP00000405488.2:p.Ile76Val
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*65A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.700A>G
  hgvsp: ENSP00000391081.1:p.Ile234Val
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.226A>G
  hgvsp: ENSP00000456941.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.700A>G
  hgvsp: ENSP00000268053.6:p.Ile234Val
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile234Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-74636264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636264
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636264
    reference: chr 15
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.221G>A
  hgvsp: ENSP00000456941.1:p.Arg74Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.221G>A
  hgvsp: ENSP00000402064.1:p.Arg74Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.221G>A
  hgvsp: ENSP00000405488.2:p.Arg74Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.695G>A
  hgvsp: ENSP00000268053.6:p.Arg232Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.221G>A
  hgvsp: ENSP00000351455.4:p.Arg74Gln
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.695G>A
  hgvsp: ENSP00000391081.1:p.Arg232Gln
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8868
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg232Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

15-74636265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636265
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636265
    reference: chr 15
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.220C>T
  hgvsp: ENSP00000405488.2:p.Arg74Ter
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.694C>T
  hgvsp: ENSP00000391081.1:p.Arg232Ter
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.694C>T
  hgvsp: ENSP00000268053.6:p.Arg232Ter
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*59C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.220C>T
  hgvsp: ENSP00000402064.1:p.Arg74Ter
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.220C>T
  hgvsp: ENSP00000351455.4:p.Arg74Ter
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.220C>T
  hgvsp: ENSP00000456941.1:p.Arg74Ter
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg232Ter
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

15-74636274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636274
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636274
    reference: chr 15
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.211G>A
  hgvsp: ENSP00000405488.2:p.Glu71Lys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.211G>A
  hgvsp: ENSP00000456941.1:p.Glu71Lys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.211G>A
  hgvsp: ENSP00000402064.1:p.Glu71Lys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*50G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.685G>A
  hgvsp: ENSP00000268053.6:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.211G>A
  hgvsp: ENSP00000351455.4:p.Glu71Lys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.685G>A
  hgvsp: ENSP00000391081.1:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu229Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-74636275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636275
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636275
    reference: chr 15
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*49C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.210C>T
  hgvsp: ENST00000566674.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.210C>T
  hgvsp: ENST00000358632.4:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.684C>T
  hgvsp: ENST00000268053.6:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.210C>T
  hgvsp: ENST00000419019.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.684C>T
  hgvsp: ENST00000435365.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.210C>T
  hgvsp: ENST00000450547.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro228Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-74636276-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636276
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636276
    reference: chr 15
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.683C>G
  hgvsp: ENSP00000391081.1:p.Pro228Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.209C>G
  hgvsp: ENSP00000402064.1:p.Pro70Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.209C>G
  hgvsp: ENSP00000456941.1:p.Pro70Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*48C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.683C>G
  hgvsp: ENSP00000268053.6:p.Pro228Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.209C>G
  hgvsp: ENSP00000405488.2:p.Pro70Arg
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.209C>G
  hgvsp: ENSP00000351455.4:p.Pro70Arg
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro228Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

15-74636281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636281
    reference: chr 15
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.204G>A
  hgvsp: ENST00000450547.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.204G>A
  hgvsp: ENST00000419019.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.678G>A
  hgvsp: ENST00000435365.1:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.204G>A
  hgvsp: ENST00000358632.4:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.204G>A
  hgvsp: ENST00000566674.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.678G>A
  hgvsp: ENST00000268053.6:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36908
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val226Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-74636286-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636286
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636286
    reference: chr 15
allele count: 5
allele frequency: 4.122963256151461e-5
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.199G>A
  hgvsp: ENSP00000405488.2:p.Val67Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.673G>A
  hgvsp: ENSP00000268053.6:p.Val225Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.199G>A
  hgvsp: ENSP00000456941.1:p.Val67Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.199G>A
  hgvsp: ENSP00000351455.4:p.Val67Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.199G>A
  hgvsp: ENSP00000402064.1:p.Val67Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.673G>A
  hgvsp: ENSP00000391081.1:p.Val225Ile
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val225Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-74636293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636293
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636293
    reference: chr 15
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.192G>A
  hgvsp: ENST00000450547.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.666G>A
  hgvsp: ENST00000268053.6:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.192G>A
  hgvsp: ENST00000358632.4:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.192G>A
  hgvsp: ENST00000419019.2:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.666G>A
  hgvsp: ENST00000435365.1:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.192G>A
  hgvsp: ENST00000566674.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36863
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu222Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-74636302-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636302
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636302
    reference: chr 15
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*22G>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.183G>T
  hgvsp: ENSP00000351455.4:p.Gln61His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.183G>T
  hgvsp: ENSP00000402064.1:p.Gln61His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.657G>T
  hgvsp: ENSP00000268053.6:p.Gln219His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.183G>T
  hgvsp: ENSP00000456941.1:p.Gln61His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.657G>T
  hgvsp: ENSP00000391081.1:p.Gln219His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.183G>T
  hgvsp: ENSP00000405488.2:p.Gln61His
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln219His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-74636306-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636306
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636306
    reference: chr 15
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.179G>T
  hgvsp: ENSP00000405488.2:p.Arg60Leu
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.653G>T
  hgvsp: ENSP00000268053.6:p.Arg218Leu
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.179G>T
  hgvsp: ENSP00000456941.1:p.Arg60Leu
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*18G>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.179G>T
  hgvsp: ENSP00000351455.4:p.Arg60Leu
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.179G>T
  hgvsp: ENSP00000402064.1:p.Arg60Leu
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.653G>T
  hgvsp: ENSP00000391081.1:p.Arg218Leu
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg218Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-74636306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636306
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636306
    reference: chr 15
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.179G>A
  hgvsp: ENSP00000402064.1:p.Arg60His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.179G>A
  hgvsp: ENSP00000405488.2:p.Arg60His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.653G>A
  hgvsp: ENSP00000391081.1:p.Arg218His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.653G>A
  hgvsp: ENSP00000268053.6:p.Arg218His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.179G>A
  hgvsp: ENSP00000351455.4:p.Arg60His
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.179G>A
  hgvsp: ENSP00000456941.1:p.Arg60His
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg218His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

15-74636307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636307
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636307
    reference: chr 15
allele count: 2
allele frequency: 1.651827747402501e-5
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.178C>T
  hgvsp: ENSP00000351455.4:p.Arg60Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.178C>T
  hgvsp: ENSP00000456941.1:p.Arg60Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.178C>T
  hgvsp: ENSP00000405488.2:p.Arg60Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.178C>T
  hgvsp: ENSP00000402064.1:p.Arg60Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.652C>T
  hgvsp: ENSP00000391081.1:p.Arg218Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.652C>T
  hgvsp: ENSP00000268053.6:p.Arg218Cys
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*17C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4406
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg218Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

15-74636309-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636309
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636309
    reference: chr 15
allele count: 253
allele frequency: 2.090045435770343e-3
allele num: 121050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.176A>C
  hgvsp: ENSP00000405488.2:p.Glu59Ala
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.650A>C
  hgvsp: ENSP00000391081.1:p.Glu217Ala
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.650A>C
  hgvsp: ENSP00000268053.6:p.Glu217Ala
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.176A>C
  hgvsp: ENSP00000351455.4:p.Glu59Ala
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.176A>C
  hgvsp: ENSP00000456941.1:p.Glu59Ala
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.176A>C
  hgvsp: ENSP00000402064.1:p.Glu59Ala
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*15A>C
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 26836
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 15779
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 9.75e1
  variant carriers: 252
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu217Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

15-74636311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636311
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636311
    reference: chr 15
allele count: 2
allele frequency: 1.652400938563733e-5
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.174G>A
  hgvsp: ENST00000566674.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.648G>A
  hgvsp: ENST00000435365.1:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.648G>A
  hgvsp: ENST00000268053.6:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.174G>A
  hgvsp: ENST00000419019.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.174G>A
  hgvsp: ENST00000450547.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.174G>A
  hgvsp: ENST00000358632.4:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36847
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly216Gly
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-74636322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636322
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636322
    reference: chr 15
allele count: 3
allele frequency: 2.484554353767412e-5
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.637G>A
  hgvsp: ENSP00000391081.1:p.Val213Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.163G>A
  hgvsp: ENSP00000402064.1:p.Val55Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.637G>A
  hgvsp: ENSP00000268053.6:p.Val213Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.163G>A
  hgvsp: ENSP00000351455.4:p.Val55Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.163G>A
  hgvsp: ENSP00000405488.2:p.Val55Ile
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.163G>A
  hgvsp: ENSP00000456941.1:p.Val55Ile
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val213Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-74636323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636323
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636323
    reference: chr 15
allele count: 2
allele frequency: 1.657522666622466e-5
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.162C>T
  hgvsp: ENST00000358632.4:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.162C>T
  hgvsp: ENST00000566674.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.636C>T
  hgvsp: ENST00000435365.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.636C>T
  hgvsp: ENST00000268053.6:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.162C>T
  hgvsp: ENST00000450547.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.162C>T
  hgvsp: ENST00000419019.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn212Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-74636329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636329
    reference: chr 15
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.630C>T
  hgvsp: ENST00000268053.6:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.156C>T
  hgvsp: ENST00000419019.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.156C>T
  hgvsp: ENST00000450547.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.430C>T
  hgvsp: ENSP00000439750.1:p.His144Tyr
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.156C>T
  hgvsp: ENST00000566674.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.630C>T
  hgvsp: ENST00000435365.1:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.156C>T
  hgvsp: ENST00000358632.4:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2590
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His144Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-74636335-TGCAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636335
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636331
    reference: chr 15
allele count: 1
allele frequency: 8.32514693884347e-6
allele num: 120118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-6_152-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-6_626-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-6_152-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-6_626-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-6_152-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-6_152-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-6_426-3delCTGC
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: c.626-6_626-3delCTGC
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: TGCAG
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

15-74636336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636336
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636336
    reference: chr 15
allele count: 2
allele frequency: 1.667389201987528e-5
allele num: 119948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-3C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-3C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-3C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-3C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-3C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-3C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-3C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
hgvs: c.626-3C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

15-74636356-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636356
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636356
    reference: chr 15
allele count: 4
allele frequency: 3.43147347471004e-5
allele num: 116568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-23T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-23T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-23T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-23T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-23T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-23T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-23T>C
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21075
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

15-74636371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636371
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636371
    reference: chr 15
allele count: 3
allele frequency: 2.602224034141179e-5
allele num: 115286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-38G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-38G>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13168
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

15-74636372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636372
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636372
    reference: chr 15
allele count: 67
allele frequency: 5.831157528285466e-4
allele num: 114900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-39C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-39C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-39C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-39C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-39C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-39C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-39C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13106
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6637
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-74636375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636375
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636375
    reference: chr 15
allele count: 2
allele frequency: 1.749689430126153e-5
allele num: 114306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-42C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-42C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-42C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-42C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-42C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-42C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-42C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5847
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

15-74636385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74636385
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74636385
    reference: chr 15
allele count: 6
allele frequency: 5.326704545454545e-5
allele num: 112640
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.626-52T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.152-52T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.152-52T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-52T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.626-52T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.152-52T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.152-52T>C
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11579
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5399
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

15-74637216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637216
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637216
    reference: chr 15
allele count: 6
allele frequency: 4.609711124769514e-4
allele num: 13016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+169C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+169C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+169C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+169C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+169C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+169C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-883C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32502
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8681
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22547
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-74637222-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637222
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637222
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 13182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+163T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+163T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+163T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+163T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+163T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-889T>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+163T>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33013
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25399
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

15-74637245-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637245
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637243
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 15342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+138_151+139delCC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+138_151+139delCC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+138_151+139delCC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+138_625+139delCC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+138_625+139delCC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+138_151+139delCC
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-914_426-913delCC
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34674
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31731
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: TGG
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

15-74637252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637252
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637252
    reference: chr 15
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-919G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+133G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+133G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+133G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+133G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+133G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+133G>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9834
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31829
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

15-74637261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637261
    reference: chr 15
allele count: 1
allele frequency: 5.596597268860533e-5
allele num: 17868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+124G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+124G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+124G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+124G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-928G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+124G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+124G>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30082
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-74637262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637262
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637262
    reference: chr 15
allele count: 9
allele frequency: 4.806665242469558e-4
allele num: 18724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+123C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+123C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+123C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+123C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+123C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-929C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+123C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

15-74637284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637284
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 25198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+101G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+101G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+101G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+101G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+101G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+101G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-951G>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27940
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18935
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18313
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

15-74637293-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637293
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637293
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 29244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+92A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+92A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+92A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-960A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+92A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+92A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+92A>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32832
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-74637306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637306
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637306
    reference: chr 15
allele count: 4
allele frequency: 1.003109639883639e-4
allele num: 39876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-973G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+79G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+79G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+79G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+79G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+79G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+79G>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

15-74637310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637310
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637310
    reference: chr 15
allele count: 1
allele frequency: 2.290845780262073e-5
allele num: 43652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+75T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+75T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+75T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+75T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+75T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+75T>C
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-977T>C
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

15-74637318-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637318
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637318
    reference: chr 15
allele count: 1
allele frequency: 1.87913409500902e-5
allele num: 53216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-985C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+67C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+67C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+67C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+67C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+67C>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+67C>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

15-74637320-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637320
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637320
    reference: chr 15
allele count: 1
allele frequency: 1.738525730180807e-5
allele num: 57520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-987T>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+65T>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+65T>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+65T>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+65T>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+65T>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+65T>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

15-74637322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637322
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637322
    reference: chr 15
allele count: 1
allele frequency: 1.649566164098842e-5
allele num: 60622
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+63C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+63C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+63C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+63C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-989C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+63C>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+63C>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

15-74637323-AGAGTGAACACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637323
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637312
    reference: chr 15
allele count: 1
allele frequency: 1.596831885539091e-5
allele num: 62624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: AGAGTGAACACT
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-74637324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637324
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637324
    reference: chr 15
allele count: 1
allele frequency: 1.563917300053173e-5
allele num: 63942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-991C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+61C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+61C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+61C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+61C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+61C>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+61C>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

15-74637327-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637327
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637327
    reference: chr 15
allele count: 52
allele frequency: 7.614361857904294e-4
allele num: 68292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-994A>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+58A>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+58A>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+58A>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+58A>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+58A>T
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+58A>T
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22209
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 24229
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-74637349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637349
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637349
    reference: chr 15
allele count: 1
allele frequency: 9.268184177355972e-6
allele num: 107896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+36G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+36G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+36G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+36G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-1016G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+36G>A
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+36G>A
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6950
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

15-74637370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74637370
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74637370
    reference: chr 15
allele count: 4
allele frequency: 3.333055578701775e-5
allele num: 120010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000405488
  ensembl transcript: ENST00000419019
  gene symbol: CYP11A1
  hgvsc: ENST00000419019.2:c.151+15A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000402064
  ensembl transcript: ENST00000450547
  gene symbol: CYP11A1
  hgvsc: ENST00000450547.1:c.151+15A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000439750
  ensembl transcript: ENST00000541301
  gene symbol: CYP11A1
  hgvsc: ENST00000541301.1:c.426-1037A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000351455
  ensembl transcript: ENST00000358632
  gene symbol: CYP11A1
  hgvsc: ENST00000358632.4:c.151+15A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000268053
  ensembl transcript: ENST00000268053
  gene symbol: CYP11A1
  hgvsc: ENST00000268053.6:c.625+15A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000391081
  ensembl transcript: ENST00000435365
  gene symbol: CYP11A1
  hgvsc: ENST00000435365.1:c.625+15A>G
  variant of: http://identifiers.org/hgnc/2590
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140459
  ensembl protein: ENSP00000456941
  ensembl transcript: ENST00000566674
  gene symbol: CYP11A1
  hgvsc: ENST00000566674.1:c.151+15A>G
  variant of: http://identifiers.org/hgnc/2590
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.030015e6

VQSLOD
type: SiteQuality
SIO_000300: 5.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.030015e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

VQSLOD
type: SiteQuality
SIO_000300: 5.22e0

GenotypeQuality
all individuals: 1525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12667
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10638
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.832944470368642e-4
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 1.0837e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.242e0

DP
type: SiteQuality
SIO_000300: 2.021119e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.061e1

VQSLOD
type: SiteQuality
SIO_000300: -1.718e-1

GenotypeQuality
all individuals: 3131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12664
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 2.017783e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.478e0

QD
type: SiteQuality
SIO_000300: 1.291e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 3295
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12664
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1554
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.53857791225416e-5
allele num: 66100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.478e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.017783e6

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

QD
type: SiteQuality
SIO_000300: 1.385e1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

FS
type: SiteQuality
SIO_000300: 6.649e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.840091e6

GenotypeQuality
all individuals: 3228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.060106640814348e-3
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.961553550411926e-4
allele num: 66274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.663138796492289e-3
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.737098344693281e-5
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597402597402597e-4
allele num: 11550
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 1.849047e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.037e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 1.844201e6

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 6.948e0

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 3.075e0

DP
type: SiteQuality
SIO_000300: 1.851037e6

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 1.401e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.062e0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003003003003003e-5
allele num: 66600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.852656e6

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 1.101e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

DP
type: SiteQuality
SIO_000300: 1.852784e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

QD
type: SiteQuality
SIO_000300: 1.37e1

GenotypeQuality
all individuals: 4494
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36799
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350540216086435e-4
allele num: 66640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.124178484953303e-3
allele num: 11564
num of homozygotes: 1

East Asian
type: Population
allele count: 4
allele frequency: 4.625346901017577e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

DP
type: SiteQuality
SIO_000300: 1.855226e6

VQSLOD
type: SiteQuality
SIO_000300: 5.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.46e1

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8852
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e0

FS
type: SiteQuality
SIO_000300: 7.052e0

QD
type: SiteQuality
SIO_000300: 1.535e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: -1.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

MQRankSum
type: SiteQuality
SIO_000300: -1.835e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

DP
type: SiteQuality
SIO_000300: 1.849944e6

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.657e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

FS
type: SiteQuality
SIO_000300: 4.217e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.392e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

DP
type: SiteQuality
SIO_000300: 1.849878e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 989
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variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.997120921305183e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 2.506e0

QD
type: SiteQuality
SIO_000300: 1.43e1

DP
type: SiteQuality
SIO_000300: 1.850114e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 2615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4459
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.581e1

DP
type: SiteQuality
SIO_000300: 1.848817e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.005e0

FS
type: SiteQuality
SIO_000300: 4.772e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 36899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 8868
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998590662388677e-5
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.848979e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 1372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 989
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2621
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variant carriers: 0

GenotypeQuality
all individuals: 8873
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.334e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.849231e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.849231e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.848888e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.307e1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.848888e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2622
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GenotypeQuality
all individuals: 36945
bin: 6.25e1
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Latino
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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East Asian
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66730
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African
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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South Asian
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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African
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South Asian
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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East Asian
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Other
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Latino
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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FS
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Other
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Latino
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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Latino
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East Asian
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European (Non-Finnish)
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DP
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

QD
type: SiteQuality
SIO_000300: 1.572e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.695e0

VQSLOD
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SIO_000300: -1.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQ
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SIO_000300: 5.911e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

QD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 3.558e0

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
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SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.846748e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

DP
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SIO_000300: 1.846553e6

MQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

FS
type: SiteQuality
SIO_000300: 4.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.928e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.729505361466621e-4
allele num: 11564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.846211e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

FS
type: SiteQuality
SIO_000300: 1.962e0

QD
type: SiteQuality
SIO_000300: 1.377e1

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.845667e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

ReadPosRankSum
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SIO_000300: 2.83e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Latino
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allele count: 0
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African
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allele frequency: 4.81881264456438e-4
allele num: 10376
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South Asian
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.63948332369385e-5
allele num: 10374
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
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East Asian
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South Asian
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

European (Finnish)
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African
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Other
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Latino
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East Asian
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South Asian
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele num: 8644
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Latino
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South Asian
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Other
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African
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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QD
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

QD
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SIO_000300: 1.583e1

MQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

DP
type: SiteQuality
SIO_000300: 1.84098e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.840524e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.054e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.381e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 242
allele frequency: 3.637238103826615e-3
allele num: 66534
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
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African
type: Population
allele count: 3
allele frequency: 2.904162633107454e-4
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

QD
type: SiteQuality
SIO_000300: 1.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.839558e6

FS
type: SiteQuality
SIO_000300: 2.917e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10326
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FS
type: SiteQuality
SIO_000300: 4.056e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.14e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.204e0

DP
type: SiteQuality
SIO_000300: 1.828619e6

GenotypeQuality
all individuals: 4160
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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South Asian
type: Population
allele count: 3
allele frequency: 1.822821728034998e-4
allele num: 16458
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.352e0

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

FS
type: SiteQuality
SIO_000300: 1.6376e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.821498e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1355
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016318281905107e-5
allele num: 66306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.052e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 1.375e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.819129e6

MQRankSum
type: SiteQuality
SIO_000300: -8.94e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
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Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.923e0

MQRankSum
type: SiteQuality
SIO_000300: -9.79e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3143
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
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South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
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MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.74e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.794937e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 8.15e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 949
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GenotypeQuality
all individuals: 1334
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.991e0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.787332e6

GenotypeQuality
all individuals: 145
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2719
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GenotypeQuality
all individuals: 683
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.23616351220729e-5
allele num: 64142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.61095e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.39e0

GenotypeQuality
all individuals: 1871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 938
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.287726358148894e-5
allele num: 15904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.142381296546523e-5
allele num: 63646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.445982e6

QD
type: SiteQuality
SIO_000300: 1.377e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4140
bin: 9.75e1
variant carriers: 65

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.024848637739657e-3
allele num: 63424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.301991429291656e-5
allele num: 15868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10748
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

QD
type: SiteQuality
SIO_000300: 1.362e1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

DP
type: SiteQuality
SIO_000300: 1.42435e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
all individuals: 3450
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2706
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.264702162640698e-4
allele num: 15814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.571e1

VQSLOD
type: SiteQuality
SIO_000300: -1.114e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.407642e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 1929
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5974
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6124
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.931620629708325e-4
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.126954346466542e-4
allele num: 9594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604930346022983e-5
allele num: 62308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.215e0

DP
type: SiteQuality
SIO_000300: 1.376783e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.6584e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.693679720822024e-4
allele num: 5158
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.944444444444444e-3
allele num: 144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.207e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

FS
type: SiteQuality
SIO_000300: 4.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 2.12889e5

GenotypeQuality
all individuals: 6524
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.23136e5

GenotypeQuality
all individuals: 1291
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.027e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

DP
type: SiteQuality
SIO_000300: 2.98364e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.302226935312832e-4
allele num: 1886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.26633e5

QD
type: SiteQuality
SIO_000300: 1.131e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 692
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5247
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.415458937198068e-3
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7122
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.279999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 3.67635e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 29908
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 4.151291512915129e-3
allele num: 2168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

QD
type: SiteQuality
SIO_000300: 1.486e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

DP
type: SiteQuality
SIO_000300: 3.79174e5

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.12473e5

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
all individuals: 688
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13334
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

MQ
type: SiteQuality
SIO_000300: 5.662e1

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

QD
type: SiteQuality
SIO_000300: 1.103e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 5.73159e5

GenotypeQuality
all individuals: 1911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 2.042900919305414e-3
allele num: 1958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.85e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 6.77891e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.836e0

GenotypeQuality
all individuals: 2091
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3891
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12854
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variant carriers: 0

GenotypeQuality
all individuals: 33317
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.359197907585005e-4
allele num: 2294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 9.32e0

DP
type: SiteQuality
SIO_000300: 7.1131e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
all individuals: 1379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 2.5e0
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GenotypeQuality
all individuals: 299
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 330
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variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.002402883460152e-4
allele num: 4994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.961e1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 7.9255e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.577e0

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.895375284306293e-4
allele num: 5276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.101e-1

DP
type: SiteQuality
SIO_000300: 8.23712e5

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.845e1

GenotypeQuality
all individuals: 456
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 271
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GenotypeQuality
all individuals: 537
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.822821728034998e-4
allele num: 5486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.16e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.747e0

FS
type: SiteQuality
SIO_000300: 1.982e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 8.51167e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.864e-1

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 20548
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.606882168925965e-4
allele num: 3836
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.6658e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2170
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 409
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GenotypeQuality
all individuals: 652
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.751927119831815e-4
allele num: 5708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34544
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.003e0

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.586e1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.733e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.91e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 100
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variant carriers: 50

GenotypeQuality
all individuals: 698
bin: 4.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

South Asian
type: Population
allele count: 52
allele frequency: 4.525674499564839e-3
allele num: 11490
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37278
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 9.172e5

GenotypeQuality
all individuals: 981
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.675434775324197e-5
allele num: 59686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14826
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.283e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.266073e6

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.940886699507389e-4
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0