12-53456919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456919
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456919
    reference: chr 12
allele count: 3
allele frequency: 2.682499374083479e-5
allele num: 111836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3870G>A
  hgvsp: ENST00000314250.6:c.3870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.236G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3840G>A
  hgvsp: ENST00000451358.1:c.3840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3900G>A
  hgvsp: ENST00000314276.3:c.3900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4154G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3498G>A
  hgvsp: ENST00000379902.3:c.3498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3579G>A
  hgvsp: ENST00000546602.1:c.3579G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3675G>A
  hgvsp: ENST00000549700.1:c.3675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.563G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3864G>A
  hgvsp: ENST00000552570.1:c.3864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1128G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1300Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-53456922-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456922
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456922
    reference: chr 12
allele count: 1
allele frequency: 8.907892392659896e-6
allele num: 112260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3873C>A
  hgvsp: ENST00000314250.6:c.3873C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1131C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3501C>A
  hgvsp: ENST00000379902.3:c.3501C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.239C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4157C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3582C>A
  hgvsp: ENST00000546602.1:c.3582C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3903C>A
  hgvsp: ENST00000314276.3:c.3903C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.566C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3867C>A
  hgvsp: ENST00000552570.1:c.3867C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3678C>A
  hgvsp: ENST00000549700.1:c.3678C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3843C>A
  hgvsp: ENST00000451358.1:c.3843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1301Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-53456929-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456929
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456929
    reference: chr 12
allele count: 1
allele frequency: 8.809175637343858e-6
allele num: 113518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3850G>C
  hgvsp: ENSP00000393362.1:p.Ala1284Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3910G>C
  hgvsp: ENSP00000319756.3:p.Ala1304Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3589G>C
  hgvsp: ENSP00000449363.1:p.Ala1197Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3508G>C
  hgvsp: ENSP00000369232.3:p.Ala1170Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3880G>C
  hgvsp: ENSP00000319684.6:p.Ala1294Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3685G>C
  hgvsp: ENSP00000449361.1:p.Ala1229Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3874G>C
  hgvsp: ENSP00000447021.1:p.Ala1292Pro
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.246G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1138G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4164G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.573G>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1304Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

12-53456938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456938
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456938
    reference: chr 12
allele count: 1
allele frequency: 8.719155985700584e-6
allele num: 114690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.582C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3883C>T
  hgvsp: ENSP00000447021.1:p.Arg1295Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1147C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3694C>T
  hgvsp: ENSP00000449361.1:p.Arg1232Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3889C>T
  hgvsp: ENSP00000319684.6:p.Arg1297Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4173C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3598C>T
  hgvsp: ENSP00000449363.1:p.Arg1200Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.255C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3517C>T
  hgvsp: ENSP00000369232.3:p.Arg1173Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3859C>T
  hgvsp: ENSP00000393362.1:p.Arg1287Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3919C>T
  hgvsp: ENSP00000319756.3:p.Arg1307Trp
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1307Trp
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

12-53456939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456939
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456939
    reference: chr 12
allele count: 4
allele frequency: 3.47983435988447e-5
allele num: 114948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3890G>A
  hgvsp: ENSP00000319684.6:p.Arg1297Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3695G>A
  hgvsp: ENSP00000449361.1:p.Arg1232Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1148G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3599G>A
  hgvsp: ENSP00000449363.1:p.Arg1200Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3860G>A
  hgvsp: ENSP00000393362.1:p.Arg1287Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3920G>A
  hgvsp: ENSP00000319756.3:p.Arg1307Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3884G>A
  hgvsp: ENSP00000447021.1:p.Arg1295Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3518G>A
  hgvsp: ENSP00000369232.3:p.Arg1173Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.583G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4174G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.256G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1307Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

12-53456943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456943
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456943
    reference: chr 12
allele count: 2
allele frequency: 1.73271186734358e-5
allele num: 115426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3603C>T
  hgvsp: ENST00000546602.1:c.3603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3924C>T
  hgvsp: ENST00000314276.3:c.3924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.260C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.587C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3699C>T
  hgvsp: ENST00000549700.1:c.3699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1152C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3894C>T
  hgvsp: ENST00000314250.6:c.3894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4178C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3888C>T
  hgvsp: ENST00000552570.1:c.3888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3864C>T
  hgvsp: ENST00000451358.1:c.3864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3522C>T
  hgvsp: ENST00000379902.3:c.3522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1308Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

12-53456957-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456957
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456957
    reference: chr 12
allele count: 1
allele frequency: 8.576917798819816e-6
allele num: 116592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3908T>G
  hgvsp: ENSP00000319684.6:p.Leu1303Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3617T>G
  hgvsp: ENSP00000449363.1:p.Leu1206Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3938T>G
  hgvsp: ENSP00000319756.3:p.Leu1313Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.274T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3878T>G
  hgvsp: ENSP00000393362.1:p.Leu1293Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4192T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.601T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3902T>G
  hgvsp: ENSP00000447021.1:p.Leu1301Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3713T>G
  hgvsp: ENSP00000449361.1:p.Leu1238Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3536T>G
  hgvsp: ENSP00000369232.3:p.Leu1179Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1166T>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1313Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-53456963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456963
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456963
    reference: chr 12
allele count: 2
allele frequency: 1.710746912101824e-5
allele num: 116908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3542G>A
  hgvsp: ENSP00000369232.3:p.Cys1181Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1172G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.607G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4198G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3914G>A
  hgvsp: ENSP00000319684.6:p.Cys1305Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3908G>A
  hgvsp: ENSP00000447021.1:p.Cys1303Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3944G>A
  hgvsp: ENSP00000319756.3:p.Cys1315Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3719G>A
  hgvsp: ENSP00000449361.1:p.Cys1240Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.280G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3884G>A
  hgvsp: ENSP00000393362.1:p.Cys1295Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3623G>A
  hgvsp: ENSP00000449363.1:p.Cys1208Tyr
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys1315Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-53456967-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456967
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456967
    reference: chr 12
allele count: 7
allele frequency: 5.980861244019139e-5
allele num: 117040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3723C>A
  hgvsp: ENSP00000449361.1:p.Ser1241Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3888C>A
  hgvsp: ENSP00000393362.1:p.Ser1296Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1176C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.284C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3912C>A
  hgvsp: ENSP00000447021.1:p.Ser1304Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4202C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3918C>A
  hgvsp: ENSP00000319684.6:p.Ser1306Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3627C>A
  hgvsp: ENSP00000449363.1:p.Ser1209Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3546C>A
  hgvsp: ENSP00000369232.3:p.Ser1182Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.611C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3948C>A
  hgvsp: ENSP00000319756.3:p.Ser1316Arg
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1316Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

12-53456969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456969
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456969
    reference: chr 12
allele count: 3
allele frequency: 2.558722685635331e-5
allele num: 117246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.286C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3920C>T
  hgvsp: ENSP00000319684.6:p.Pro1307Leu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3890C>T
  hgvsp: ENSP00000393362.1:p.Pro1297Leu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.613C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3629C>T
  hgvsp: ENSP00000449363.1:p.Pro1210Leu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3725C>T
  hgvsp: ENSP00000449361.1:p.Pro1242Leu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4204C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3914C>T
  hgvsp: ENSP00000447021.1:p.Pro1305Leu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1178C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3950C>T
  hgvsp: ENSP00000319756.3:p.Pro1317Leu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3548C>T
  hgvsp: ENSP00000369232.3:p.Pro1183Leu
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1317Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

12-53456971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456971
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456971
    reference: chr 12
allele count: 1
allele frequency: 8.523405270873819e-6
allele num: 117324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.288C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3550C>T
  hgvsp: ENSP00000369232.3:p.Arg1184Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3916C>T
  hgvsp: ENSP00000447021.1:p.Arg1306Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3952C>T
  hgvsp: ENSP00000319756.3:p.Arg1318Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4206C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3727C>T
  hgvsp: ENSP00000449361.1:p.Arg1243Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3922C>T
  hgvsp: ENSP00000319684.6:p.Arg1308Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.615C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3631C>T
  hgvsp: ENSP00000449363.1:p.Arg1211Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1180C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3892C>T
  hgvsp: ENSP00000393362.1:p.Arg1298Cys
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1318Cys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

12-53456972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456972
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456972
    reference: chr 12
allele count: 3
allele frequency: 2.554843984194032e-5
allele num: 117424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3728G>A
  hgvsp: ENSP00000449361.1:p.Arg1243His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.616G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3893G>A
  hgvsp: ENSP00000393362.1:p.Arg1298His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.289G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3953G>A
  hgvsp: ENSP00000319756.3:p.Arg1318His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3917G>A
  hgvsp: ENSP00000447021.1:p.Arg1306His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3551G>A
  hgvsp: ENSP00000369232.3:p.Arg1184His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4207G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3923G>A
  hgvsp: ENSP00000319684.6:p.Arg1308His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3632G>A
  hgvsp: ENSP00000449363.1:p.Arg1211His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1318His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

12-53456976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456976
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456976
    reference: chr 12
allele count: 7
allele frequency: 5.949750110495359e-5
allele num: 117652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3555G>A
  hgvsp: ENST00000379902.3:c.3555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3921G>A
  hgvsp: ENST00000552570.1:c.3921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3957G>A
  hgvsp: ENST00000314276.3:c.3957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.293G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3732G>A
  hgvsp: ENST00000549700.1:c.3732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3897G>A
  hgvsp: ENST00000451358.1:c.3897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4211G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1185G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3927G>A
  hgvsp: ENST00000314250.6:c.3927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3636G>A
  hgvsp: ENST00000546602.1:c.3636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.620G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1319Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-53456983-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53456983
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53456983
    reference: chr 12
allele count: 2
allele frequency: 1.695260052892114e-5
allele num: 117976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.627G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3904G>T
  hgvsp: ENSP00000393362.1:p.Ala1302Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4218G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3934G>T
  hgvsp: ENSP00000319684.6:p.Ala1312Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3643G>T
  hgvsp: ENSP00000449363.1:p.Ala1215Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3964G>T
  hgvsp: ENSP00000319756.3:p.Ala1322Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3739G>T
  hgvsp: ENSP00000449361.1:p.Ala1247Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3562G>T
  hgvsp: ENSP00000369232.3:p.Ala1188Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3928G>T
  hgvsp: ENSP00000447021.1:p.Ala1310Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1192G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.300G>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1322Ser
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

12-53457000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457000
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457000
    reference: chr 12
allele count: 7
allele frequency: 5.913061107262928e-5
allele num: 118382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3981G>A
  hgvsp: ENST00000314276.3:c.3981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3951G>A
  hgvsp: ENST00000314250.6:c.3951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1209G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.644G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3756G>A
  hgvsp: ENST00000549700.1:c.3756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3579G>A
  hgvsp: ENST00000379902.3:c.3579G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3921G>A
  hgvsp: ENST00000451358.1:c.3921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3945G>A
  hgvsp: ENST00000552570.1:c.3945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3660G>A
  hgvsp: ENST00000546602.1:c.3660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4235G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.317G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Lys1327Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

12-53457007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457007
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457007
    reference: chr 12
allele count: 8
allele frequency: 6.74957393314547e-5
allele num: 118526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.651G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3958G>A
  hgvsp: ENSP00000319684.6:p.Ala1320Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3952G>A
  hgvsp: ENSP00000447021.1:p.Ala1318Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1216G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3928G>A
  hgvsp: ENSP00000393362.1:p.Ala1310Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3988G>A
  hgvsp: ENSP00000319756.3:p.Ala1330Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3667G>A
  hgvsp: ENSP00000449363.1:p.Ala1223Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.324G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3586G>A
  hgvsp: ENSP00000369232.3:p.Ala1196Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3763G>A
  hgvsp: ENSP00000449361.1:p.Ala1255Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4242G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala1330Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

12-53457015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457015
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457015
    reference: chr 12
allele count: 4
allele frequency: 3.370635027639207e-5
allele num: 118672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.332C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3675C>T
  hgvsp: ENST00000546602.1:c.3675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3960C>T
  hgvsp: ENST00000552570.1:c.3960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3594C>T
  hgvsp: ENST00000379902.3:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3936C>T
  hgvsp: ENST00000451358.1:c.3936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3771C>T
  hgvsp: ENST00000549700.1:c.3771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1224C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550660
  gene symbol: TENC1
  hgvsc: ENST00000550660.1:n.659C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3966C>T
  hgvsp: ENST00000314250.6:c.3966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.3996C>T
  hgvsp: ENST00000314276.3:c.3996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4250C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1332Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-53457026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457026
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457026
    reference: chr 12
allele count: 1
allele frequency: 8.410146000134562e-6
allele num: 118904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3947C>T
  hgvsp: ENSP00000393362.1:p.Thr1316Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3605C>T
  hgvsp: ENSP00000369232.3:p.Thr1202Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3686C>T
  hgvsp: ENSP00000449363.1:p.Thr1229Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4007C>T
  hgvsp: ENSP00000319756.3:p.Thr1336Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3782C>T
  hgvsp: ENSP00000449361.1:p.Thr1261Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3977C>T
  hgvsp: ENSP00000319684.6:p.Thr1326Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4261C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3971C>T
  hgvsp: ENSP00000447021.1:p.Thr1324Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.343C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1235C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr1336Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

12-53457027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457027
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457027
    reference: chr 12
allele count: 2
allele frequency: 1.679909956826314e-5
allele num: 119054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3606G>A
  hgvsp: ENST00000379902.3:c.3606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3978G>A
  hgvsp: ENST00000314250.6:c.3978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3948G>A
  hgvsp: ENST00000451358.1:c.3948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4008G>A
  hgvsp: ENST00000314276.3:c.4008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3687G>A
  hgvsp: ENST00000546602.1:c.3687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4262G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3783G>A
  hgvsp: ENST00000549700.1:c.3783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.344G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1236G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3972G>A
  hgvsp: ENST00000552570.1:c.3972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32287
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1336Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

12-53457028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457028
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457028
    reference: chr 12
allele count: 1
allele frequency: 8.39545973537511e-6
allele num: 119112
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4009G>A
  hgvsp: ENSP00000319756.3:p.Asp1337Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3784G>A
  hgvsp: ENSP00000449361.1:p.Asp1262Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3949G>A
  hgvsp: ENSP00000393362.1:p.Asp1317Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3979G>A
  hgvsp: ENSP00000319684.6:p.Asp1327Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3688G>A
  hgvsp: ENSP00000449363.1:p.Asp1230Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1237G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3607G>A
  hgvsp: ENSP00000369232.3:p.Asp1203Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3973G>A
  hgvsp: ENSP00000447021.1:p.Asp1325Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4263G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.345G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1337Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

12-53457042-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457042
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457042
    reference: chr 12
allele count: 1
allele frequency: 8.359386755387625e-6
allele num: 119626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+1G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+1G>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
hgvs: c.4022+1G>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-53457046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457046
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457046
    reference: chr 12
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+5G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+5G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: c.4022+5G>A
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

12-53457047-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457047
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457047
    reference: chr 12
allele count: 1
allele frequency: 8.348360382020972e-6
allele num: 119784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+6T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+6T>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
hgvs: c.4022+6T>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

12-53457060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457060
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457060
    reference: chr 12
allele count: 4
allele frequency: 3.324633874694549e-5
allele num: 120314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+19G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+19G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9855
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-53457066-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457066
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457066
    reference: chr 12
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+25C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+25C>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

12-53457071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457071
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457071
    reference: chr 12
allele count: 7
allele frequency: 5.804408033300718e-5
allele num: 120598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+30T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+30T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-53457077-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457077
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457077
    reference: chr 12
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+36A>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+36A>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-53457084-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457084
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457084
    reference: chr 12
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3620+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.358+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3701+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3992+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1250+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3986+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3962+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3797+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4022+43T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4276+43T>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32340
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-53457090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457090
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457090
    reference: chr 12
allele count: 2
allele frequency: 1.653794631782625e-5
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987-43C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277-43C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

12-53457094-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457094
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457094
    reference: chr 12
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621-39T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359-39T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

12-53457101-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457101
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457101
    reference: chr 12
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993-32G>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32354
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

12-53457101-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457101
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457101
    reference: chr 12
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798-32G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987-32G>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32354
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

12-53457118-CCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457118
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457115
    reference: chr 12
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963-8_3963-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987-8_3987-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023-8_4023-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621-8_3621-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702-8_3702-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277-8_4277-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359-8_359-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993-8_3993-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798-8_3798-6delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251-8_1251-6delCCT
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: CCCT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-53457129-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457129
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457129
    reference: chr 12
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702-4G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359-4G>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
hgvs: c.4023-4G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

12-53457133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457133
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457133
    reference: chr 12
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.359G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4023G>A
  hgvsp: ENST00000314276.3:c.4023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3702G>A
  hgvsp: ENST00000546602.1:c.3702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3798G>A
  hgvsp: ENST00000549700.1:c.3798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3987G>A
  hgvsp: ENST00000552570.1:c.3987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1251G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4277G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3963G>A
  hgvsp: ENST00000451358.1:c.3963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.3993G>A
  hgvsp: ENST00000314250.6:c.3993G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3621G>A
  hgvsp: ENST00000379902.3:c.3621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.4023G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

12-53457143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457143
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457143
    reference: chr 12
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4003C>T
  hgvsp: ENSP00000319684.6:p.Arg1335Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4287C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1261C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3973C>T
  hgvsp: ENSP00000393362.1:p.Arg1325Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3997C>T
  hgvsp: ENSP00000447021.1:p.Arg1333Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3631C>T
  hgvsp: ENSP00000369232.3:p.Arg1211Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3712C>T
  hgvsp: ENSP00000449363.1:p.Arg1238Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4033C>T
  hgvsp: ENSP00000319756.3:p.Arg1345Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.369C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3808C>T
  hgvsp: ENSP00000449361.1:p.Arg1270Cys
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32393
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg1345Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

12-53457144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457144
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457144
    reference: chr 12
allele count: 6
allele frequency: 4.965325477085023e-5
allele num: 120838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.370G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3809G>A
  hgvsp: ENSP00000449361.1:p.Arg1270His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4004G>A
  hgvsp: ENSP00000319684.6:p.Arg1335His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3632G>A
  hgvsp: ENSP00000369232.3:p.Arg1211His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3974G>A
  hgvsp: ENSP00000393362.1:p.Arg1325His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4288G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3713G>A
  hgvsp: ENSP00000449363.1:p.Arg1238His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.3998G>A
  hgvsp: ENSP00000447021.1:p.Arg1333His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4034G>A
  hgvsp: ENSP00000319756.3:p.Arg1345His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1262G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1345His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

12-53457146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457146
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457146
    reference: chr 12
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4036C>T
  hgvsp: ENSP00000319756.3:p.Arg1346Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3634C>T
  hgvsp: ENSP00000369232.3:p.Arg1212Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3976C>T
  hgvsp: ENSP00000393362.1:p.Arg1326Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4006C>T
  hgvsp: ENSP00000319684.6:p.Arg1336Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4000C>T
  hgvsp: ENSP00000447021.1:p.Arg1334Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3715C>T
  hgvsp: ENSP00000449363.1:p.Arg1239Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3811C>T
  hgvsp: ENSP00000449361.1:p.Arg1271Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4290C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1264C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.372C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1346Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

12-53457150-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457150
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457149
    reference: chr 12
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4012delT
  hgvsp: ENSP00000319684.6:p.Tyr1338IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4296delT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3640delT
  hgvsp: ENSP00000369232.3:p.Tyr1214IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1270delT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4006delT
  hgvsp: ENSP00000447021.1:p.Tyr1336IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4042delT
  hgvsp: ENSP00000319756.3:p.Tyr1348IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.378delT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3721delT
  hgvsp: ENSP00000449363.1:p.Tyr1241IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3982delT
  hgvsp: ENSP00000393362.1:p.Tyr1328IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3817delT
  hgvsp: ENSP00000449361.1:p.Tyr1273IlefsTer3
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr1348IlefsTer3
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

12-53457155-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457155
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457155
    reference: chr 12
allele count: 2
allele frequency: 1.648451280022419e-5
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1273C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.381C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3820C>T
  hgvsp: ENSP00000449361.1:p.Pro1274Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4009C>T
  hgvsp: ENSP00000447021.1:p.Pro1337Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4015C>T
  hgvsp: ENSP00000319684.6:p.Pro1339Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3643C>T
  hgvsp: ENSP00000369232.3:p.Pro1215Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3724C>T
  hgvsp: ENSP00000449363.1:p.Pro1242Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4299C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4045C>T
  hgvsp: ENSP00000319756.3:p.Pro1349Ser
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3985C>T
  hgvsp: ENSP00000393362.1:p.Pro1329Ser
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1349Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

12-53457157-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457157
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457157
    reference: chr 12
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3987A>G
  hgvsp: ENST00000451358.1:c.3987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4047A>G
  hgvsp: ENST00000314276.3:c.4047A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3726A>G
  hgvsp: ENST00000546602.1:c.3726A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4017A>G
  hgvsp: ENST00000314250.6:c.4017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4301A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4011A>G
  hgvsp: ENST00000552570.1:c.4011A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.383A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1275A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3645A>G
  hgvsp: ENST00000379902.3:c.3645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3822A>G
  hgvsp: ENST00000549700.1:c.3822A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1349Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

12-53457158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457158
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457158
    reference: chr 12
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4018G>A
  hgvsp: ENSP00000319684.6:p.Val1340Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3823G>A
  hgvsp: ENSP00000449361.1:p.Val1275Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4048G>A
  hgvsp: ENSP00000319756.3:p.Val1350Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3646G>A
  hgvsp: ENSP00000369232.3:p.Val1216Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3727G>A
  hgvsp: ENSP00000449363.1:p.Val1243Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1276G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4302G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.3988G>A
  hgvsp: ENSP00000393362.1:p.Val1330Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4012G>A
  hgvsp: ENSP00000447021.1:p.Val1338Met
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.384G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val1350Met
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-53457194-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457194
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457194
    reference: chr 12
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4024G>A
  hgvsp: ENSP00000393362.1:p.Asp1342Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4338G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1312G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4084G>A
  hgvsp: ENSP00000319756.3:p.Asp1362Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4054G>A
  hgvsp: ENSP00000319684.6:p.Asp1352Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3682G>A
  hgvsp: ENSP00000369232.3:p.Asp1228Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3763G>A
  hgvsp: ENSP00000449363.1:p.Asp1255Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3859G>A
  hgvsp: ENSP00000449361.1:p.Asp1287Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.420G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4048G>A
  hgvsp: ENSP00000447021.1:p.Asp1350Asn
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp1362Asn
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

12-53457196-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457196
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457196
    reference: chr 12
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4050C>G
  hgvsp: ENSP00000447021.1:p.Asp1350Glu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.422C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3861C>G
  hgvsp: ENSP00000449361.1:p.Asp1287Glu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4056C>G
  hgvsp: ENSP00000319684.6:p.Asp1352Glu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3684C>G
  hgvsp: ENSP00000369232.3:p.Asp1228Glu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3765C>G
  hgvsp: ENSP00000449363.1:p.Asp1255Glu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1314C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4026C>G
  hgvsp: ENSP00000393362.1:p.Asp1342Glu
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4340C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4086C>G
  hgvsp: ENSP00000319756.3:p.Asp1362Glu
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp1362Glu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

12-53457197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457197
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457197
    reference: chr 12
allele count: 2
allele frequency: 1.650382888830209e-5
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1315C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4051C>T
  hgvsp: ENSP00000447021.1:p.Arg1351Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4087C>T
  hgvsp: ENSP00000319756.3:p.Arg1363Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3766C>T
  hgvsp: ENSP00000449363.1:p.Arg1256Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4057C>T
  hgvsp: ENSP00000319684.6:p.Arg1353Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4027C>T
  hgvsp: ENSP00000393362.1:p.Arg1343Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3862C>T
  hgvsp: ENSP00000449361.1:p.Arg1288Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3685C>T
  hgvsp: ENSP00000369232.3:p.Arg1229Trp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.423C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4341C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1363Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

12-53457198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457198
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457198
    reference: chr 12
allele count: 19
allele frequency: 1.568044895601221e-4
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4052G>A
  hgvsp: ENSP00000447021.1:p.Arg1351Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3863G>A
  hgvsp: ENSP00000449361.1:p.Arg1288Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4058G>A
  hgvsp: ENSP00000319684.6:p.Arg1353Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4342G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3767G>A
  hgvsp: ENSP00000449363.1:p.Arg1256Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3686G>A
  hgvsp: ENSP00000369232.3:p.Arg1229Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.424G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4028G>A
  hgvsp: ENSP00000393362.1:p.Arg1343Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4088G>A
  hgvsp: ENSP00000319756.3:p.Arg1363Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1316G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1363Gln
num of homozygotes: 1
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/12-53457220-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457220
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457220
    reference: chr 12
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.446C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+19C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+19C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

12-53457220-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457220
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457220
    reference: chr 12
allele count: 7263
allele frequency: 6.004563567519304e-2
allele num: 120958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.446C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+19C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+19C>G
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.75e1
  variant carriers: 3323
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.25e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.75e1
  variant carriers: 376
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 5.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 4.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 6.75e1
  variant carriers: 329
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 564
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

12-53457224-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457224
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457224
    reference: chr 12
allele count: 2
allele frequency: 1.654752449033625e-5
allele num: 120864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+23T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.450T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+23T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-53457226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457226
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457226
    reference: chr 12
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.452C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+25C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+25C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

12-53457228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457228
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457228
    reference: chr 12
allele count: 100
allele frequency: 8.277734549608463e-4
allele num: 120806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.454C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+27C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-53457238-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457238
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457238
    reference: chr 12
allele count: 1
allele frequency: 8.290224167661493e-6
allele num: 120624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.464A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+37A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+37A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-53457239-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457239
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457239
    reference: chr 12
allele count: 1
allele frequency: 8.295450774795103e-6
allele num: 120548
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.465T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+38T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+38T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

12-53457241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457241
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457241
    reference: chr 12
allele count: 3
allele frequency: 2.495840266222962e-5
allele num: 120200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.467G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+40G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+40G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

12-53457242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457242
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457242
    reference: chr 12
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.468T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+41T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+41T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33412
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-53457246-A-ACCAGGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457246
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457253
    reference: chr 12
allele count: 1
allele frequency: 8.32279113123377e-6
allele num: 120152
alternate allele: ACCAGGTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4055+50_4055+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4061+50_4061+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4091+50_4091+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3866+50_3866+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4031+50_4031+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4345+50_4345+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3770+50_3770+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1319+50_1319+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3689+50_3689+56dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000550048
  gene symbol: TENC1
  hgvsc: ENST00000550048.1:n.477_483dupGTCCCAG
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-53457306-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457306
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457305
    reference: chr 12
allele count: 64
allele frequency: 5.298013245033113e-4
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-37delC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-37delC
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TC
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

12-53457309-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457309
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457309
    reference: chr 12
allele count: 6
allele frequency: 4.965900814407734e-5
allele num: 120824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-38C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-38C>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54944
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

12-53457315-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457315
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457315
    reference: chr 12
allele count: 189
allele frequency: 1.562835927034581e-3
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-32G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-32G>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 3
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-53457323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457323
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457323
    reference: chr 12
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-24C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-24C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

12-53457328-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457328
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457325
    reference: chr 12
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-13_4062-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-13_3867-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-13_4092-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-13_3690-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-13_4056-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-13_1320-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-13_3771-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-13_4346-11delTCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-13_4032-11delTCT
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: CCTT
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

12-53457334-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457334
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457331
    reference: chr 12
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-10_4056-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-10_4092-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-10_4062-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-10_3690-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-10_3771-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-10_3867-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-10_4346-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-10_4032-8delCCT
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-10_1320-8delCCT
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: TCTC
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

12-53457336-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457336
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457336
    reference: chr 12
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-11T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-53457338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457338
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457338
    reference: chr 12
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-9C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-9C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

12-53457341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457341
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457341
    reference: chr 12
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1320-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4346-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3771-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4062-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4092-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3867-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4056-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3690-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4032-6C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: c.4092-6C>T
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-53457355-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457355
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457355
    reference: chr 12
allele count: 39
allele frequency: 3.213897221215018e-4
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1328A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4100A>T
  hgvsp: ENSP00000319756.3:p.Asn1367Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4070A>T
  hgvsp: ENSP00000319684.6:p.Asn1357Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4040A>T
  hgvsp: ENSP00000393362.1:p.Asn1347Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4354A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3698A>T
  hgvsp: ENSP00000369232.3:p.Asn1233Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4064A>T
  hgvsp: ENSP00000447021.1:p.Asn1355Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3875A>T
  hgvsp: ENSP00000449361.1:p.Asn1292Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3779A>T
  hgvsp: ENSP00000449363.1:p.Asn1260Ile
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn1367Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-53457362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457362
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457362
    reference: chr 12
allele count: 11
allele frequency: 9.063493894500931e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1335C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4047C>T
  hgvsp: ENST00000451358.1:c.4047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3882C>T
  hgvsp: ENST00000549700.1:c.3882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3705C>T
  hgvsp: ENST00000379902.3:c.3705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4071C>T
  hgvsp: ENST00000552570.1:c.4071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4107C>T
  hgvsp: ENST00000314276.3:c.4107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4077C>T
  hgvsp: ENST00000314250.6:c.4077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4361C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3786C>T
  hgvsp: ENST00000546602.1:c.3786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1369Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

12-53457363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457363
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457363
    reference: chr 12
allele count: 8
allele frequency: 6.591631923273405e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4362G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4048G>A
  hgvsp: ENSP00000393362.1:p.Gly1350Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1336G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4108G>A
  hgvsp: ENSP00000319756.3:p.Gly1370Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3787G>A
  hgvsp: ENSP00000449363.1:p.Gly1263Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4078G>A
  hgvsp: ENSP00000319684.6:p.Gly1360Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4072G>A
  hgvsp: ENSP00000447021.1:p.Gly1358Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3706G>A
  hgvsp: ENSP00000369232.3:p.Gly1236Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3883G>A
  hgvsp: ENSP00000449361.1:p.Gly1295Arg
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1370Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-53457373-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53457373
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53457373
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.3797C>A
  hgvsp: ENSP00000449363.1:p.Ser1266Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.4118C>A
  hgvsp: ENSP00000319756.3:p.Ser1373Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.4058C>A
  hgvsp: ENSP00000393362.1:p.Ser1353Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.4088C>A
  hgvsp: ENSP00000319684.6:p.Ser1363Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.3893C>A
  hgvsp: ENSP00000449361.1:p.Ser1298Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.4082C>A
  hgvsp: ENSP00000447021.1:p.Ser1361Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000552168
  gene symbol: TENC1
  hgvsc: ENST00000552168.1:n.1346C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.3716C>A
  hgvsp: ENSP00000369232.3:p.Ser1239Tyr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.4372C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser1373Tyr
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1875
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3163
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32258
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.148317224443535e-5
allele num: 63526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

FS
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 2.475209e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3006
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571190648273262e-5
allele num: 63646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.946e0

MQRankSum
type: SiteQuality
SIO_000300: -1.15e0

FS
type: SiteQuality
SIO_000300: 6.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.959e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.108e0

QD
type: SiteQuality
SIO_000300: 6.3e0

DP
type: SiteQuality
SIO_000300: 2.479219e6

GenotypeQuality
all individuals: 1859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32254
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563330519338399e-5
allele num: 63966
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

DP
type: SiteQuality
SIO_000300: 2.488507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 7.326e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 319
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32255
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2660
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557098813490704e-5
allele num: 64222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 2.500337e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

FS
type: SiteQuality
SIO_000300: 2.428e0

QD
type: SiteQuality
SIO_000300: 1.486e1

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 7796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32256
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.665629860031104e-5
allele num: 64300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.568876778686043e-5
allele num: 13212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 6.665e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 2.502791e6

GenotypeQuality
all individuals: 3310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32258
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745810055865922e-4
allele num: 11456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.748e0

FS
type: SiteQuality
SIO_000300: 6.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

QD
type: SiteQuality
SIO_000300: 1.455e1

VQSLOD
type: SiteQuality
SIO_000300: -1.255e-1

DP
type: SiteQuality
SIO_000300: 2.507116e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 1924
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variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.006726457399103e-5
allele num: 14272
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.519104e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.443e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.879e1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.069e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.312e0

GenotypeQuality
all individuals: 8756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 3438
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 32260
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539788125153979e-5
allele num: 64944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.443e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 2.522508e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2726
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 3450
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GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8669
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variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.617800080041868e-5
allele num: 64966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.05143721633888e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 7.154e0

DP
type: SiteQuality
SIO_000300: 2.525049e6

QD
type: SiteQuality
SIO_000300: 1.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 289
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32268
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.04806116876024e-4
allele num: 14648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.722e1

FS
type: SiteQuality
SIO_000300: 4.318e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -9.405e-1

DP
type: SiteQuality
SIO_000300: 2.526518e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1889
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65060
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.802721088435374e-5
allele num: 14700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e0

DP
type: SiteQuality
SIO_000300: 2.527672e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65090
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167406023815083e-4
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.770480704129993e-5
allele num: 14770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.528857e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.439e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 1.722e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

QD
type: SiteQuality
SIO_000300: 1.012e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.708707902857909e-5
allele num: 14906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.94431185361973e-5
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.672241829062452e-5
allele num: 65170
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.532118e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 1.121e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
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GenotypeQuality
all individuals: 2766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 2781
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3584
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.063068582105553e-5
allele num: 65294
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.95e-1

QD
type: SiteQuality
SIO_000300: 2.88e1

DP
type: SiteQuality
SIO_000300: 2.535655e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 408
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 1971
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variant carriers: 0

GenotypeQuality
all individuals: 1892
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variant carriers: 0

GenotypeQuality
all individuals: 3602
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GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 1692
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variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32285
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.069224659375573e-4
allele num: 65468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.143e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.445e0

DP
type: SiteQuality
SIO_000300: 2.537568e6

QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
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variant carriers: 0

GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
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GenotypeQuality
all individuals: 1987
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8507
bin: 6.25e1
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GenotypeQuality
all individuals: 32281
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3017
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.068147831659902e-4
allele num: 65534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.538301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.317e0

GenotypeQuality
all individuals: 433
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 45
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32283
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GenotypeQuality
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 1986
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 8386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.481288076588338e-4
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 2.540078e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2009
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variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.461617989144482e-5
allele num: 15476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

DP
type: SiteQuality
SIO_000300: 2.543813e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 9.350000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 204
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3023
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521329033043267e-5
allele num: 65732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.282e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

FS
type: SiteQuality
SIO_000300: 3.462e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -1.066e0

DP
type: SiteQuality
SIO_000300: 2.544712e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 15616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.52077376969402e-5
allele num: 65756
num of homozygotes: 0

Latino
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MQ
type: SiteQuality
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 7.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65946
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
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MQ
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65986
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
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SIO_000300: 1.79e0

BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.207e0

MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.515105602860519e-5
allele num: 66002
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

ReadPosRankSum
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ClippingRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.989e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.020509257860875e-5
allele num: 66214
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.569338e6

QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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allele num: 16316
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DP
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

African
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num of homozygotes: 0

East Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.044589827851307e-5
allele num: 66338
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.512401693889897e-4
allele num: 6612
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South Asian
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Other
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num of homozygotes: 0

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66390
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East Asian
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allele num: 8628
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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allele count: 0
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Latino
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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SIO_000300: -7.87e-1

FS
type: SiteQuality
SIO_000300: 8.59e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.579156e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.476e0

FS
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.519e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.582428e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

QD
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BaseQRankSum
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SIO_000300: -4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 2.584133e6

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.005981903988938e-5
allele num: 66534
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.585154e6

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 2.503e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.477e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.326e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.171e1

VQSLOD
type: SiteQuality
SIO_000300: -2.003e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

FS
type: SiteQuality
SIO_000300: 4.947e0

DP
type: SiteQuality
SIO_000300: 2.586299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -8.43e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
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East Asian
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Other
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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South Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.0884e1

DP
type: SiteQuality
SIO_000300: 2.589862e6

VQSLOD
type: SiteQuality
SIO_000300: -8.895999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.591996e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.29e1

GenotypeQuality
all individuals: 42
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.186721991701245e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.827e0

QD
type: SiteQuality
SIO_000300: 2.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

DP
type: SiteQuality
SIO_000300: 2.611539e6

FS
type: SiteQuality
SIO_000300: 3.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.582e0

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.835e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.287e0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1988
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32503
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10187
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.163e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 1.0316e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.691e0

DP
type: SiteQuality
SIO_000300: 2.599081e6

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 32502
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 5
bin: 2.75e1
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
all individuals: 3050
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.038e1

FS
type: SiteQuality
SIO_000300: 5.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 2.599132e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1988
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variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.188e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.599195e6

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 3.726e0

DP
type: SiteQuality
SIO_000300: 2.599148e6

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

BaseQRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.187e1

MQRankSum
type: SiteQuality
SIO_000300: -8.77e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.59931e6

VQSLOD
type: SiteQuality
SIO_000300: 4.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.596447e6

FS
type: SiteQuality
SIO_000300: 1.046e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
all individuals: 2316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3046
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.24e1

FS
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

DP
type: SiteQuality
SIO_000300: 2.596306e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32501
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.341e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

DP
type: SiteQuality
SIO_000300: 2.596526e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32510
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.253858024691358e-3
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003273568189326e-5
allele num: 66594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.517e1

DP
type: SiteQuality
SIO_000300: 2.597785e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

GenotypeQuality
all individuals: 2770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35574
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.958342e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1782
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35574
bin: 9.75e1
variant carriers: 6667

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2047
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3715
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2770
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 8287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 7.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 2142
allele frequency: 3.223767383059419e-2
allele num: 66444
num of homozygotes: 42

African
type: Population
allele count: 2828
allele frequency: 2.73289524545806e-1
allele num: 10348
num of homozygotes: 386

European (Finnish)
type: Population
allele count: 118
allele frequency: 1.784094345328092e-2
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 144
allele frequency: 1.668211306765524e-2
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 1759
allele frequency: 1.067354368932039e-1
allele num: 16480
num of homozygotes: 129

Latino
type: Population
allele count: 235
allele frequency: 2.03674813659213e-2
allele num: 11538
num of homozygotes: 5

Other
type: Population
allele count: 37
allele frequency: 4.1019955654102e-2
allele num: 902
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: 6.64e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

DP
type: SiteQuality
SIO_000300: 2.958342e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
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variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33473
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8607
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012501882813677e-5
allele num: 66390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

DP
type: SiteQuality
SIO_000300: 2.700844e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.411e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33472
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.886e1

VQSLOD
type: SiteQuality
SIO_000300: -1.651e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.337e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.698644e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 6.833e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.151e0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33480
bin: 9.75e1
variant carriers: 99

GenotypeQuality
all individuals: 4009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3132
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014045451805413e-5
allele num: 66356
num of homozygotes: 0

African
type: Population
allele count: 94
allele frequency: 9.117361784675072e-3
allele num: 10310
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

QD
type: SiteQuality
SIO_000300: 2.063e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.393e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.689318e6

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.386e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511624391571182e-5
allele num: 66154
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.093e1

BaseQRankSum
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SIO_000300: -4.897e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

FS
type: SiteQuality
SIO_000300: 2.914e0

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

DP
type: SiteQuality
SIO_000300: 2.688033e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.549728532864206e-5
allele num: 65938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.526e0

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 2.669e0

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 2.681168e6

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.612e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.681161e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3119
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GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.56e-1

FS
type: SiteQuality
SIO_000300: 3.192e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.174e0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 5.645e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 2.681054e6

QD
type: SiteQuality
SIO_000300: 7.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 64

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1154
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GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 60
allele frequency: 5.810575246949448e-3
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.459010722933241e-4
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.168019e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.053324078824275e-5
allele num: 66274
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

FS
type: SiteQuality
SIO_000300: 1.416e0

VQSLOD
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.075e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 4.170077e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 1.091e1

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 184

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 662
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GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 142
allele frequency: 1.644660643965717e-2
allele num: 8634
num of homozygotes: 3

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.260261587607739e-4
allele num: 66364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.756936871440688e-3
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 4.176971e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e-1

QD
type: SiteQuality
SIO_000300: 8.35e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

DP
type: SiteQuality
SIO_000300: 4.180054e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 8.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

QD
type: SiteQuality
SIO_000300: 1.124e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.616e0

GenotypeQuality
all individuals: 640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.181506e6

QD
type: SiteQuality
SIO_000300: 1.757e1

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

MQ
type: SiteQuality
SIO_000300: 5.847e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 4.182775e6

FS
type: SiteQuality
SIO_000300: 1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

QD
type: SiteQuality
SIO_000300: 1.699e1

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.706e0

QD
type: SiteQuality
SIO_000300: 1.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

DP
type: SiteQuality
SIO_000300: 4.183071e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001380635092142e-5
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 4.183723e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 1.686e0

DP
type: SiteQuality
SIO_000300: 4.184082e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 5.698176583493282e-4
allele num: 66688
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.187536e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.995232526760817e-5
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.127e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.995232526760817e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 4.187863e6