12-75436121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436121
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436121
    reference: chr 12
allele count: 6
allele frequency: 4.966969651815427e-5
allele num: 120798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1199G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1135C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1814C>T
  hgvsp: ENSP00000298972.1:p.Thr605Met
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*764C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1649C>T
  hgvsp: ENSP00000319877.2:p.Thr550Met
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1602G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1814C>T
  hgvsp: ENSP00000449941.1:p.Thr605Met
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1135C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Thr550Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

12-75436126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436126
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436126
    reference: chr 12
allele count: 2
allele frequency: 1.655574318731168e-5
allele num: 120804
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1607A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1809T>C
  hgvsp: ENST00000298972.1:c.1809T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1204A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1140T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1140T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*759T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1809T>C
  hgvsp: ENST00000548513.1:c.1809T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1644T>C
  hgvsp: ENST00000350228.2:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly548Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

12-75436141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436141
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436141
    reference: chr 12
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*744G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1794G>A
  hgvsp: ENST00000548513.1:c.1794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1155G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1629G>A
  hgvsp: ENST00000350228.2:c.1629G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1794G>A
  hgvsp: ENST00000298972.1:c.1794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1622C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1219C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1155G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu543Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

12-75436148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436148
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436148
    reference: chr 12
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1162G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1162G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1787G>A
  hgvsp: ENSP00000298972.1:p.Cys596Tyr
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1629C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1622G>A
  hgvsp: ENSP00000319877.2:p.Cys541Tyr
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1226C>T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*737G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1787G>A
  hgvsp: ENSP00000449941.1:p.Cys596Tyr
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys541Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

12-75436154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436154
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436154
    reference: chr 12
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*731A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781A>G
  hgvsp: ENSP00000298972.1:p.Asp594Gly
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1232T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781A>G
  hgvsp: ENSP00000449941.1:p.Asp594Gly
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1168A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1635T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616A>G
  hgvsp: ENSP00000319877.2:p.Asp539Gly
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1168A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp539Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ

12-75436171-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436171
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436171
    reference: chr 12
allele count: 147
allele frequency: 1.218521527213647e-3
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1652A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1249A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-17T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1185T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1185T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-17T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*714T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-17T>C
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13439
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 18378
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10415
  bin: 9.75e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

12-75436177-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436177
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436177
    reference: chr 12
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1658A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1191T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-23T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-23T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*708T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1191T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-23T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1255A>G
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

12-75436181-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436181
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436182
    reference: chr 12
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1663dupG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1196dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*703dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-28dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-28dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-28dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1260dupG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1196dupC
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

12-75436182-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436182
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436181
    reference: chr 12
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1197delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*702delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1262delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-29delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-29delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-29delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1665delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1197delT
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8678
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: GA
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/12-75436188-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436188
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436187
    reference: chr 12
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1268delA
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*696delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-35delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1671delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-35delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1203delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-35delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1203delT
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: CA
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

12-75436190-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436190
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436190
    reference: chr 12
allele count: 340
allele frequency: 2.822701158967887e-3
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*695T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1204T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-36T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-36T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1671A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-36T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1204T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1268A>G
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17448
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 6
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-75436193-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436193
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436193
    reference: chr 12
allele count: 623
allele frequency: 5.17639629758878e-3
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1271C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1207G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1674C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-39G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*692G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-39G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1207G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-39G>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16722
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 3.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8542
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 3.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 5001
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10557
  bin: 9.75e1
  variant carriers: 603
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 16
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

12-75436198-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436198
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436198
    reference: chr 12
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1212A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-44A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*687A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1679T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-44A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-44A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1212A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1276T>C
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10128
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-75436205-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436205
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436205
    reference: chr 12
allele count: 1
allele frequency: 8.338614455822021e-6
allele num: 119924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1219T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-51T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1219T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-51T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-51T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.1686A>T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*680T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.416+1283A>T
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4608
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/12-75436834-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436834
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436834
    reference: chr 12
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-680T>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*51T>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1848T>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2315A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1848T>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1424A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-680T>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*51T>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-680T>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12418
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-75436837-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436837
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436836
    reference: chr 12
allele count: 2
allele frequency: 1.663533678239316e-5
allele num: 120226
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*47delG
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-684delG
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*47delG
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1852delG
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1420delC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-684delG
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1852delG
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2319delC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-684delG
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18209
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: AC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-75436841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436841
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436841
    reference: chr 12
allele count: 1
allele frequency: 8.315731701232391e-6
allele num: 120254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2322G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1855C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-687C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-687C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1417G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-687C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1855C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-75436844-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436844
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436844
    reference: chr 12
allele count: 3
allele frequency: 2.494180246092451e-5
allele num: 120280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1858A>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*41A>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1414T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-690A>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-690A>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1858A>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2325T>A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*41A>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-690A>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

12-75436850-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436850
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436850
    reference: chr 12
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1864G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*35G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*35G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-696G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1408C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2331C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-696G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1864G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-696G>C
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

12-75436850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436850
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436850
    reference: chr 12
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-696G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2331C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1864G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1408C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-696G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1864G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-696G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

12-75436859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436859
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436859
    reference: chr 12
allele count: 13
allele frequency: 1.079536961684742e-4
allele num: 120422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2340C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-705G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-705G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1399C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-705G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1873G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1873G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12583
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12020
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-75436860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436860
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436860
    reference: chr 12
allele count: 8
allele frequency: 6.639114342146758e-5
allele num: 120498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-706C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1398G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-706C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1874C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2341G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1874C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-706C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18984
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8087
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

12-75436862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436862
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436862
    reference: chr 12
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*23G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1876G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-708G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2343C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-708G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1876G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*23G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1396C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-708G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum

12-75436868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436868
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436868
    reference: chr 12
allele count: 419
allele frequency: 3.473431153112824e-3
allele num: 120630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*17G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1390C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1882G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*17G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2349C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-714G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-714G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-714G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1882G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19117
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 7
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

12-75436873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436873
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436873
    reference: chr 12
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*12A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-719A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1385T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2354T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-719A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1887A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*12A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-719A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1887A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

12-75436879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436879
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436879
    reference: chr 12
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-725A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1893A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1379T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-725A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2360T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1893A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-725A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

12-75436882-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436882
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436882
    reference: chr 12
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-728C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2363G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-728C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-728C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*3C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*3C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1376G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1896C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1896C>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

12-75436883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436883
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436883
    reference: chr 12
allele count: 5
allele frequency: 4.137360364087712e-5
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2364G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1375G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-729C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1897C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1897C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-729C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-729C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-75436884-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436884
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436884
    reference: chr 12
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-730A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.*1A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-730A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1898A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2365T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1898A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1374T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.*1A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-730A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-75436904-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436904
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436904
    reference: chr 12
allele count: 3
allele frequency: 2.478847170809096e-5
allele num: 121024
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1354G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-750C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1898C>G
  hgvsp: ENSP00000449253.1:p.Pro633Arg
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1733C>G
  hgvsp: ENSP00000438423.1:p.Pro578Arg
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1918C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-750C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1918C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2385G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-750C>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro633Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

12-75436910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436910
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436910
    reference: chr 12
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1892G>A
  hgvsp: ENSP00000449253.1:p.Arg631Gln
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1924G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-756G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1924G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1348C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2391C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1727G>A
  hgvsp: ENSP00000438423.1:p.Arg576Gln
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-756G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-756G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg631Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

12-75436911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436911
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436911
    reference: chr 12
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2392G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1347G>A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1726C>T
  hgvsp: ENSP00000438423.1:p.Arg576Ter
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1891C>T
  hgvsp: ENSP00000449253.1:p.Arg631Ter
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-757C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1925C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-757C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1925C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-757C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg631Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-75436917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436917
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436917
    reference: chr 12
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-763C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2398G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-763C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1720C>T
  hgvsp: ENSP00000438423.1:p.Arg574Cys
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1885C>T
  hgvsp: ENSP00000449253.1:p.Arg629Cys
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1931C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1931C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1341G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-763C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg629Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

12-75436925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436925
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436925
    reference: chr 12
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-771C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1877C>T
  hgvsp: ENSP00000449253.1:p.Pro626Leu
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1712C>T
  hgvsp: ENSP00000438423.1:p.Pro571Leu
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2406G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1939C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-771C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-771C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1333G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1939C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro626Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-75436925-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436925
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436925
    reference: chr 12
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1712C>A
  hgvsp: ENSP00000438423.1:p.Pro571His
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1333G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1877C>A
  hgvsp: ENSP00000449253.1:p.Pro626His
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1939C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-771C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-771C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2406G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-771C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1939C>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro626His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

12-75436929-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436929
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436929
    reference: chr 12
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1873T>A
  hgvsp: ENSP00000449253.1:p.Cys625Ser
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2410A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-775T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1329A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-775T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1943T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1708T>A
  hgvsp: ENSP00000438423.1:p.Cys570Ser
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1943T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-775T>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys625Ser
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

12-75436934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436934
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436934
    reference: chr 12
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-780C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1948C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-780C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1703C>T
  hgvsp: ENSP00000438423.1:p.Ser568Phe
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-780C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1868C>T
  hgvsp: ENSP00000449253.1:p.Ser623Phe
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1324G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1948C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2415G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser623Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

12-75436943-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436943
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436943
    reference: chr 12
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1859C>A
  hgvsp: ENSP00000449253.1:p.Pro620His
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-789C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1315G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1957C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1694C>A
  hgvsp: ENSP00000438423.1:p.Pro565His
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1957C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-789C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-789C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2424G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro620His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

12-75436950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436950
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436950
    reference: chr 12
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1852A>G
  hgvsp: ENSP00000449253.1:p.Thr618Ala
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2431T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-796A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1687A>G
  hgvsp: ENSP00000438423.1:p.Thr563Ala
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1308T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-796A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1964A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-796A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1964A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3819
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr618Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-75436960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436960
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436960
    reference: chr 12
allele count: 1
allele frequency: 8.269793751343841e-6
allele num: 120922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1298G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-1974C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-806C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1842C>T
  hgvsp: ENST00000549446.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2441G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-1974C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1677C>T
  hgvsp: ENST00000540018.1:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-806C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-806C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu614Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

12-75436987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436987
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436987
    reference: chr 12
allele count: 2
allele frequency: 1.655574318731168e-5
allele num: 120804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1271C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2468C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2001G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-833G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1815G>A
  hgvsp: ENST00000549446.1:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-833G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-833G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2001G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1650G>A
  hgvsp: ENST00000540018.1:c.1650G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11840
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala605Ala
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

12-75436988-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436988
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436988
    reference: chr 12
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1814C>A
  hgvsp: ENSP00000449253.1:p.Ala605Glu
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-834C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1270G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1649C>A
  hgvsp: ENSP00000438423.1:p.Ala550Glu
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-834C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2002C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2002C>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2469G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-834C>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala605Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

12-75436992-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75436992
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75436992
    reference: chr 12
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1810A>G
  hgvsp: ENSP00000449253.1:p.Ile604Val
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2473T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2006A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1645A>G
  hgvsp: ENSP00000438423.1:p.Ile549Val
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-838A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-838A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-838A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1266T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2006A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11837
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile604Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/12-75437003-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437003
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437003
    reference: chr 12
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1799G>T
  hgvsp: ENSP00000449253.1:p.Ser600Ile
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2017G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2484C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2017G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1634G>T
  hgvsp: ENSP00000438423.1:p.Ser545Ile
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-849G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-849G>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1255C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-849G>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23223
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser600Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

12-75437006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437006
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437006
    reference: chr 12
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2487C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1252C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-852G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1796G>A
  hgvsp: ENSP00000449253.1:p.Arg599Gln
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2020G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1631G>A
  hgvsp: ENSP00000438423.1:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-852G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-852G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2020G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11829
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg599Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-75437007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437007
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437007
    reference: chr 12
allele count: 1
allele frequency: 8.292561572269675e-6
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1795C>T
  hgvsp: ENSP00000449253.1:p.Arg599Ter
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-853C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-853C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2021C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2488G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2021C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1630C>T
  hgvsp: ENSP00000438423.1:p.Arg544Ter
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-853C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1251G>A
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg599Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

12-75437018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437018
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437018
    reference: chr 12
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1240T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1619A>G
  hgvsp: ENSP00000438423.1:p.Tyr540Cys
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-864A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2032A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2032A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2499T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1784A>G
  hgvsp: ENSP00000449253.1:p.Tyr595Cys
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-864A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-864A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr595Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

12-75437038-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437038
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437038
    reference: chr 12
allele count: 1
allele frequency: 8.330972891014212e-6
allele num: 120034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2519C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2052G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2052G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-884G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-884G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-17G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1220C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-884G>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-17G>C
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

12-75437040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437040
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437040
    reference: chr 12
allele count: 2
allele frequency: 1.666527789350887e-5
allele num: 120010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-886G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2054G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-886G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2521C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-19G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-19G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-886G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1218C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2054G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

12-75437043-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437043
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437043
    reference: chr 12
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2524A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-889T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-22T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-22T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2057T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1215A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-889T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2057T>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-889T>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

12-75437051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437051
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437051
    reference: chr 12
allele count: 20
allele frequency: 1.669142561466175e-4
allele num: 119822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-897A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-897A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2532T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2065A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-30A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-30A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2065A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-897A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1207T>C
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11412
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11791
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

12-75437060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437060
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437060
    reference: chr 12
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1198C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-906G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2074G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2074G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-906G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-906G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2541C>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4467
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

12-75437063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437063
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437063
    reference: chr 12
allele count: 3
allele frequency: 2.512352399296541e-5
allele num: 119410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-909C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1195G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2077C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2544G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-42C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-42C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-909C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2077C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-909C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11757
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

12-75437066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437066
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437066
    reference: chr 12
allele count: 3
allele frequency: 2.512352399296541e-5
allele num: 119410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2080A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2080A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2547T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1192T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-912A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-912A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-45A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-45A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-912A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS

12-75437067-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437067
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437067
    reference: chr 12
allele count: 2
allele frequency: 1.676474039799494e-5
allele num: 119298
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2548A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1191A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-46T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2081T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-46T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-913T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2081T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-913T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-913T>C
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11755
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

12-75437068-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437068
    reference: chr 12
allele count: 78
allele frequency: 6.537919935626635e-4
allele num: 119304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-914A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-914A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-47A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-914A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1190T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2082A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2082A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2549T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-47A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-75437070-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437070
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437070
    reference: chr 12
allele count: 3
allele frequency: 2.518764797743187e-5
allele num: 119106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-916C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1188G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2551G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-916C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-916C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-49C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2084C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2084C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-49C>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

12-75437072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437072
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437072
    reference: chr 12
allele count: 1
allele frequency: 8.407035006893769e-6
allele num: 118948
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000547040
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000547040.1:n.2553C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2086G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-51G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-1186C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-918G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2086G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-918G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-51G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-918G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

12-75437489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437489
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437489
    reference: chr 12
allele count: 5
allele frequency: 5.322546306152864e-4
allele num: 9394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1335C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-769G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1335C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1335C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-468C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.*28C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2503C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-468C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2503C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-75437562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437562
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437562
    reference: chr 12
allele count: 1
allele frequency: 9.42151874882231e-5
allele num: 10614
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-541C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1408C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1408C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1812C>T
  hgvsp: ENST00000393288.2:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1408C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2576C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-696G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-541C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2576C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His604His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-75437570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437570
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437570
    reference: chr 12
allele count: 13
allele frequency: 1.225028269883151e-3
allele num: 10612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2584C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2584C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1416C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1804C>T
  hgvsp: ENST00000393288.2:c.1804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-688G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-549C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1416C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1416C>T
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-549C>T
  variant of: http://identifiers.org/hgnc/6234
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu602Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

12-75437612-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437612
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437613
    reference: chr 12
allele count: 2
allele frequency: 1.944012441679627e-4
allele num: 10288
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2627dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1781-20dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1459dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-644dupG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1459dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-592dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2627dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-592dupC
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1459dupC
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-75437614-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437614
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437615
    reference: chr 12
allele count: 18
allele frequency: 1.95993031358885e-3
allele num: 9184
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1461dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2629dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1461dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2629dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1461dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1781-22dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-594dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-594dupT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-635dupA
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

12-75437614-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437614
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437613
    reference: chr 12
allele count: 6
allele frequency: 6.533101045296168e-4
allele num: 9184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1781-22delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1461delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1461delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2629delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2629delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-594delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1461delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-594delT
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-635delA
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GA
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

12-75437640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437640
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437640
    reference: chr 12
allele count: 33
allele frequency: 3.431066749844042e-3
allele num: 9618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-618T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-619A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1781-47A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1486A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1486A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1486A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2654A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2654A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-619A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

12-75437641-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75437641
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75437641
    reference: chr 12
allele count: 1
allele frequency: 1.043405676126878e-4
allele num: 9584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1781-2655T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1781-620T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257434
  ensembl transcript: ENST00000550049
  gene symbol: RP11-81K13.1
  hgvsc: ENST00000550049.1:n.417-617A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1781-48T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1616-620T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1616-1487T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1781-1487T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1781-1487T>C
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1781-2655T>C
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

12-75441886-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75441886
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75441886
    reference: chr 12
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1615+2284C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1780+47C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1780+47C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1615+2284C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1780+47C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1780+47C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1780+47C>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1780+47C>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

12-75441891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75441891
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75441891
    reference: chr 12
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1615+2279A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1780+42A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1615+2279A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1780+42A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1780+42A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1780+42A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1780+42A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1780+42A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum

12-75441894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75441894
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75441894
    reference: chr 12
allele count: 40
allele frequency: 3.299241174529858e-4
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1780+39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1780+39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1780+39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1780+39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1615+2276G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1780+39G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1615+2276G>A
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1780+39G>A
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 26125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-75441899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75441899
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 75441899
    reference: chr 12
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000340121
  ensembl transcript: ENST00000341669
  gene symbol: KCNC2
  hgvsc: ENST00000341669.3:c.1780+34A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449941
  ensembl transcript: ENST00000548513
  gene symbol: KCNC2
  hgvsc: ENST00000548513.1:c.1780+34A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000448301
  ensembl transcript: ENST00000550433
  gene symbol: KCNC2
  hgvsc: ENST00000550433.1:c.1780+34A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000376966
  ensembl transcript: ENST00000393288
  gene symbol: KCNC2
  hgvsc: ENST00000393288.2:c.1780+34A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000298972
  ensembl transcript: ENST00000298972
  gene symbol: KCNC2
  hgvsc: ENST00000298972.1:c.1780+34A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000319877
  ensembl transcript: ENST00000350228
  gene symbol: KCNC2
  hgvsc: ENST00000350228.2:c.1615+2271A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000438423
  ensembl transcript: ENST00000540018
  gene symbol: KCNC2
  hgvsc: ENST00000540018.1:c.1615+2271A>G
  variant of: http://identifiers.org/hgnc/6234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166006
  ensembl protein: ENSP00000449253
  ensembl transcript: ENST00000549446
  gene symbol: KCNC2
  hgvsc: ENST00000549446.1:c.1780+34A>G
  variant of: http://identifiers.org/hgnc/6234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 23642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10330
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.514129224472599e-5
allele num: 66458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.757469244288225e-4
allele num: 11380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 8.5e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

DP
type: SiteQuality
SIO_000300: 2.065016e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10326
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 2.579e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.064806e6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.790436005625879e-5
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.293e0

DP
type: SiteQuality
SIO_000300: 2.064253e6

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeQuality
all individuals: 1791
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8855
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

DP
type: SiteQuality
SIO_000300: 2.063978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.169e1

VQSLOD
type: SiteQuality
SIO_000300: -4.944e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.324e0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 2.063301e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

FS
type: SiteQuality
SIO_000300: 6.333e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.056524035921817e-3
allele num: 11358
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.104151493080845e-4
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 117
allele frequency: 1.762207428382083e-3
allele num: 66394
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

DP
type: SiteQuality
SIO_000300: 2.061062e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 1778
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 3993
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variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
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variant carriers: 0

GenotypeQuality
all individuals: 10297
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 5.158e0

DP
type: SiteQuality
SIO_000300: 2.05574e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10295
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variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3987
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 2.052174e6

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.797e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10294
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3983
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 9.25e1
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GenotypeQuality
all individuals: 5106
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.565e0

DP
type: SiteQuality
SIO_000300: 2.050838e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 1.267e0

MQ
type: SiteQuality
SIO_000300: 6.053e1

GenotypeQuality
all individuals: 8519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
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GenotypeQuality
all individuals: 155
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 653
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 3701
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5074
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
SIO_000300: 2.168e0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.038197e6

GenotypeQuality
all individuals: 861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10459
bin: 9.75e1
variant carriers: 330

GenotypeQuality
all individuals: 374
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GenotypeQuality
all individuals: 30
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GenotypeQuality
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GenotypeQuality
all individuals: 2491
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GenotypeQuality
all individuals: 8454
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GenotypeQuality
all individuals: 3950
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GenotypeQuality
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GenotypeQuality
all individuals: 155
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GenotypeQuality
all individuals: 3684
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variant carriers: 0

African
type: Population
allele count: 323
allele frequency: 3.114153490165831e-2
allele num: 10372
num of homozygotes: 6

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.146384479717813e-3
allele num: 11340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.524886877828054e-5
allele num: 66300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

DP
type: SiteQuality
SIO_000300: 2.033554e6

QD
type: SiteQuality
SIO_000300: 1.6e1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 672
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 7.5e0
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 324
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GenotypeQuality
all individuals: 1399
bin: 3.75e1
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GenotypeQuality
all individuals: 3631
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variant carriers: 0

GenotypeQuality
all individuals: 801
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GenotypeQuality
all individuals: 894
bin: 2.25e1
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GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 8199
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1732
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 48
allele frequency: 4.234297812279464e-3
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215657670799903e-4
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 553
allele frequency: 5.334748215319313e-2
allele num: 10366
num of homozygotes: 16

European (Non-Finnish)
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allele count: 19
allele frequency: 2.868011109769352e-4
allele num: 66248
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.48e-2

FS
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
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SIO_000300: 3.23e-1

QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
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allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
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QD
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
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allele frequency: 6.161429451632779e-5
allele num: 16230
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 6.64e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.020782986950218e-5
allele num: 66208
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

VQSLOD
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.11e-2

FS
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SIO_000300: 0.0e0

MQRankSum
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.124e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10386
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.530079729403237e-5
allele num: 66224
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ClippingRankSum
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QD
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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allele frequency: 1.164958061509786e-4
allele num: 8584
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66220
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European (Finnish)
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Latino
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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allele num: 6562
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Latino
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DP
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ClippingRankSum
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QD
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.788890841975742e-5
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.659776081117784e-4
allele num: 66274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 1.563e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
type: SiteQuality
SIO_000300: 2.102595e6

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12013
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.756234632946962e-4
allele num: 11388
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92492781520693e-4
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.444987775061124e-4
allele num: 16360
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

DP
type: SiteQuality
SIO_000300: 2.103908e6

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 4.601e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12006
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 2.105477e6

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.248e1

MQRankSum
type: SiteQuality
SIO_000300: -1.112e0

GenotypeQuality
all individuals: 3537
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12157
bin: 9.75e1
variant carriers: 412

GenotypeQuality
all individuals: 1840
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 399
allele frequency: 3.840230991337825e-2
allele num: 10390
num of homozygotes: 7

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.325942350332594e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.491228070175439e-3
allele num: 11400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.121526e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 1.441e0

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

QD
type: SiteQuality
SIO_000300: 1.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.374e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8165
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4950
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.579e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 2.105381e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.712e0

QD
type: SiteQuality
SIO_000300: 1.977e1

MQRankSum
type: SiteQuality
SIO_000300: -1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2664
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
type: SiteQuality
SIO_000300: 2.793e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 2.106923e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11863
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.857e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.078e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

DP
type: SiteQuality
SIO_000300: 2.107496e6

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.698e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11866
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3572
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.381352961794602e-4
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 2.107841e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.048e1

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeQuality
all individuals: 2662
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11862
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.34e0

FS
type: SiteQuality
SIO_000300: 1.7151e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: -1.445e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.328e1

DP
type: SiteQuality
SIO_000300: 2.107733e6

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506399086703119e-5
allele num: 66572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 2.109908e6

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.069e0

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.426e0

VQSLOD
type: SiteQuality
SIO_000300: -2.007e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.82e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.023e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 2.110196e6

QD
type: SiteQuality
SIO_000300: 7.43e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.237e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.110121e6

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

FS
type: SiteQuality
SIO_000300: 3.451e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.110455e6

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

FS
type: SiteQuality
SIO_000300: 3.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8205
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 9.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.110552e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.764e-1

QD
type: SiteQuality
SIO_000300: 8.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.048e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 8.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.110552e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.764e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 4.927e0

DP
type: SiteQuality
SIO_000300: 2.110525e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.252e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.110385e6

QD
type: SiteQuality
SIO_000300: 7.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8207
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.371e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.109873e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3813
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.108e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

DP
type: SiteQuality
SIO_000300: 2.109354e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.727e0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008604609182261e-5
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.57e0

QD
type: SiteQuality
SIO_000300: 1.388e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 2.811e0

DP
type: SiteQuality
SIO_000300: 2.107346e6

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
all individuals: 11838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.773e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 2.106872e6

VQSLOD
type: SiteQuality
SIO_000300: -2.932e0

QD
type: SiteQuality
SIO_000300: 8.23e0

GenotypeQuality
all individuals: 1846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 4889
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504392827055001e-5
allele num: 66472
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.094e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.106081e6

MQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

FS
type: SiteQuality
SIO_000300: 1.0652e1

VQSLOD
type: SiteQuality
SIO_000300: -1.588e0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11833
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.795074758135444e-5
allele num: 11370
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

FS
type: SiteQuality
SIO_000300: 9.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.791e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.103425e6

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

FS
type: SiteQuality
SIO_000300: 1.279e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.823e1

VQSLOD
type: SiteQuality
SIO_000300: -2.368e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.101903e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.435e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11822
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.218e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.383e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 1.497e0

DP
type: SiteQuality
SIO_000300: 2.101788e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7915
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variant carriers: 0

GenotypeQuality
all individuals: 22811
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 11816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 4834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.093607e6

VQSLOD
type: SiteQuality
SIO_000300: -3.418e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.617e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

FS
type: SiteQuality
SIO_000300: 1.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.134e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11795
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.042e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

QD
type: SiteQuality
SIO_000300: 1.127e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.064202e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-5
allele num: 66100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.974e-1

FS
type: SiteQuality
SIO_000300: 5.797e0

DP
type: SiteQuality
SIO_000300: 2.061493e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

GenotypeQuality
all individuals: 7352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4654
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variant carriers: 0

GenotypeQuality
all individuals: 20057
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 1.44e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

DP
type: SiteQuality
SIO_000300: 2.051087e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2600
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variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.295684113865932e-3
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.22955858846674e-4
allele num: 16266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.542701393095094e-5
allele num: 66040
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.309e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

DP
type: SiteQuality
SIO_000300: 2.033047e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1876
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517911353976928e-5
allele num: 65880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.377e0

QD
type: SiteQuality
SIO_000300: 1.124e1

MQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e0

VQSLOD
type: SiteQuality
SIO_000300: -1.445e0

FS
type: SiteQuality
SIO_000300: 1.868e0

DP
type: SiteQuality
SIO_000300: 1.996906e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.246e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3059
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.571e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.148e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.984681e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.57653791130186e-4
allele num: 8388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

DP
type: SiteQuality
SIO_000300: 1.974956e6

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 9.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1757
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GenotypeQuality
all individuals: 2366
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.385496183206107e-4
allele num: 8384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

DP
type: SiteQuality
SIO_000300: 1.969947e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

QD
type: SiteQuality
SIO_000300: 1.297e1

GenotypeQuality
all individuals: 2780
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 77

Latino
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allele count: 2
allele frequency: 1.76678445229682e-4
allele num: 11320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

African
type: Population
allele count: 74
allele frequency: 7.209664848012471e-3
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.039236543780202e-5
allele num: 65806
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
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SIO_000300: 3.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.9696e6

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

VQSLOD
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QD
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SIO_000300: 1.562e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.566210045662101e-5
allele num: 65700
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 5.766e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

DP
type: SiteQuality
SIO_000300: 1.965248e6

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.779e0

FS
type: SiteQuality
SIO_000300: 1.583e0

MQ
type: SiteQuality
SIO_000300: 5.849e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.862e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

QD
type: SiteQuality
SIO_000300: 6.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 446
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 7.507507507507507e-4
allele num: 6660
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 9.9365e4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.401e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.779289493575208e-4
allele num: 2646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.33e0

DP
type: SiteQuality
SIO_000300: 1.26854e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.747311827956989e-3
allele num: 7440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 186
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MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.27105e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 7.980845969672786e-4
allele num: 2506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 90
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 6.276e1

FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele count: 12
allele frequency: 1.845585973546601e-3
allele num: 6502
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 8.333333333333333e-3
allele num: 120
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Latino
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African
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Other
type: Population
allele count: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.813236627379873e-3
allele num: 2206
num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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allele num: 120
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.075976622577669e-4
allele num: 6502
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Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 1
allele frequency: 1.219512195121951e-2
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.359927470534905e-3
allele num: 2206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

FS
type: SiteQuality
SIO_000300: 4.614e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.63e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.19873e5

QD
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

South Asian
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allele count: 33
allele frequency: 4.84866294446077e-3
allele num: 6806
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.461e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.3076e4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.477541371158392e-4
allele num: 6768
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.279e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.2962e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.144844e6

FS
type: SiteQuality
SIO_000300: 1.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.011e0

QD
type: SiteQuality
SIO_000300: 1.091e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.172e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.168e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

QD
type: SiteQuality
SIO_000300: 1.935e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.145082e6

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 40

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 37
allele frequency: 5.54839096661968e-4
allele num: 66686
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
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DP
type: SiteQuality
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MQRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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