13-25875890-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875890
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875890
    reference: chr 13
allele count: 1
allele frequency: 1.782022952455628e-5
allele num: 56116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.122C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-22C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.128C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.128C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.108C>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-25875891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875891
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875891
    reference: chr 13
allele count: 1
allele frequency: 1.677627164139042e-5
allele num: 59608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.129G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.129G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.123G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.109G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum

13-25875892-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875892
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875892
    reference: chr 13
allele count: 5
allele frequency: 8.20802416442314e-5
allele num: 60916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.130G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.110G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.130G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-20G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.124G>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27531
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17445
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

13-25875893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875893
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875893
    reference: chr 13
allele count: 1
allele frequency: 1.601845325815339e-5
allele num: 62428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.131C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.131C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.125C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.111C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26626
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

13-25875898-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875898
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875898
    reference: chr 13
allele count: 2
allele frequency: 2.568317238545305e-5
allele num: 77872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.130A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.136A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.116A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.136A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-14A>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27141
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

13-25875899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875899
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875899
    reference: chr 13
allele count: 1
allele frequency: 1.249468975685334e-5
allele num: 80034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.131G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.137G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.137G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.117G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-13G>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28418
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-25875902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875902
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875902
    reference: chr 13
allele count: 1
allele frequency: 1.14502942725628e-5
allele num: 87334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.140C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.140C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.134C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-10C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.120C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

13-25875906-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875906
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875906
    reference: chr 13
allele count: 1
allele frequency: 1.062067207612898e-5
allele num: 94156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.144C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-6C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.144C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.138C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.124C>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

13-25875909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875909
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875909
    reference: chr 13
allele count: 1
allele frequency: 1.006157685032398e-5
allele num: 99388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.141G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.147G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.127G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.147G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/13-25875910-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875910
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875910
    reference: chr 13
allele count: 724
allele frequency: 7.18710292249047e-3
allele num: 100736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.148A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.128A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.142A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.148A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37869
  bin: 2.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 2.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 2
num of homozygotes: 17
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

13-25875917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875917
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875917
    reference: chr 13
allele count: 3
allele frequency: 2.828694274722788e-5
allele num: 106056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.155C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.6C>T
  hgvsp: ENST00000381718.3:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.6C>T
  hgvsp: ENST00000381747.3:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.149C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.155C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.6C>T
  hgvsp: ENST00000381736.3:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.6C>T
  hgvsp: ENST00000490231.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.6C>T
  hgvsp: ENST00000465068.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.6C>T
  hgvsp: ENST00000463407.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.135C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.6C>T
  hgvsp: ENST00000481980.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

13-25875922-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875922
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875922
    reference: chr 13
allele count: 1
allele frequency: 9.231394125140779e-6
allele num: 108326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.11G>A
  hgvsp: ENSP00000371155.3:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.160G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.11G>A
  hgvsp: ENSP00000371137.3:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.11G>A
  hgvsp: ENSP00000418904.1:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.160G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.11G>A
  hgvsp: ENSP00000418341.1:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.11G>A
  hgvsp: ENSP00000418244.1:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.11G>A
  hgvsp: ENSP00000371166.3:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.154G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.140G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.11G>A
  hgvsp: ENSP00000418555.1:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly4Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

13-25875927-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875927
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875927
    reference: chr 13
allele count: 2
allele frequency: 1.818380186929483e-5
allele num: 109988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.165T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.16T>A
  hgvsp: ENSP00000418244.1:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.16T>A
  hgvsp: ENSP00000371137.3:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.16T>A
  hgvsp: ENSP00000418341.1:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.16T>A
  hgvsp: ENSP00000418555.1:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.16T>A
  hgvsp: ENSP00000371155.3:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.165T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.145T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.16T>A
  hgvsp: ENSP00000418904.1:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.16T>A
  hgvsp: ENSP00000371166.3:p.Ser6Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.159T>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser6Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

13-25875938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875938
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875938
    reference: chr 13
allele count: 1
allele frequency: 8.86713485138682e-6
allele num: 112776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.27C>T
  hgvsp: ENST00000481980.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.170C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.27C>T
  hgvsp: ENST00000490231.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.27C>T
  hgvsp: ENST00000381718.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.27C>T
  hgvsp: ENST00000381747.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.27C>T
  hgvsp: ENST00000463407.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.156C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.27C>T
  hgvsp: ENST00000465068.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.176C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.27C>T
  hgvsp: ENST00000381736.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.176C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser9Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

13-25875941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875941
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875941
    reference: chr 13
allele count: 1
allele frequency: 8.829398364795423e-6
allele num: 113258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.30G>A
  hgvsp: ENST00000481980.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.30G>A
  hgvsp: ENST00000465068.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.30G>A
  hgvsp: ENST00000381747.3:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.159G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.30G>A
  hgvsp: ENST00000463407.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.30G>A
  hgvsp: ENST00000381736.3:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.30G>A
  hgvsp: ENST00000490231.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.179G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.30G>A
  hgvsp: ENST00000381718.3:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.179G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.173G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly10Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

13-25875946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875946
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875946
    reference: chr 13
allele count: 1
allele frequency: 8.784412937683375e-6
allele num: 113838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.35T>C
  hgvsp: ENSP00000418341.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.184T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.35T>C
  hgvsp: ENSP00000371166.3:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.35T>C
  hgvsp: ENSP00000418904.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.35T>C
  hgvsp: ENSP00000418244.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.178T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.35T>C
  hgvsp: ENSP00000371155.3:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.35T>C
  hgvsp: ENSP00000418555.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.164T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.184T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.35T>C
  hgvsp: ENSP00000371137.3:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu12Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

13-25875950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875950
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875950
    reference: chr 13
allele count: 4
allele frequency: 3.504406791540362e-5
allele num: 114142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.188C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.182C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.39C>T
  hgvsp: ENST00000381736.3:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.39C>T
  hgvsp: ENST00000465068.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.188C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.168C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.39C>T
  hgvsp: ENST00000381718.3:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.39C>T
  hgvsp: ENST00000481980.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.39C>T
  hgvsp: ENST00000490231.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.39C>T
  hgvsp: ENST00000381747.3:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.39C>T
  hgvsp: ENST00000463407.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly13Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

13-25875951-TCCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875951
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875948
    reference: chr 13
allele count: 1
allele frequency: 8.75902179244622e-6
allele num: 114168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.46_48delACC
  hgvsp: ENSP00000418555.1:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.46_48delACC
  hgvsp: ENSP00000371155.3:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.195_197delACC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.46_48delACC
  hgvsp: ENSP00000371137.3:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.189_191delACC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.46_48delACC
  hgvsp: ENSP00000418244.1:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.175_177delACC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.46_48delACC
  hgvsp: ENSP00000418341.1:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.46_48delACC
  hgvsp: ENSP00000418904.1:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.46_48delACC
  hgvsp: ENSP00000371166.3:p.Thr16del
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.195_197delACC
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr16del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: TCCA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

13-25875958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875958
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875958
    reference: chr 13
allele count: 10
allele frequency: 8.744622057434678e-5
allele num: 114356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.190C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.47C>T
  hgvsp: ENSP00000418904.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.47C>T
  hgvsp: ENSP00000418555.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.196C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.196C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.47C>T
  hgvsp: ENSP00000418244.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.47C>T
  hgvsp: ENSP00000418341.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.47C>T
  hgvsp: ENSP00000371137.3:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.47C>T
  hgvsp: ENSP00000371155.3:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.47C>T
  hgvsp: ENSP00000371166.3:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.176C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr16Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

13-25875960-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875960
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875960
    reference: chr 13
allele count: 1
allele frequency: 8.73576071004263e-6
allele num: 114472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.49G>T
  hgvsp: ENSP00000418341.1:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.49G>T
  hgvsp: ENSP00000418244.1:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.198G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.192G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.49G>T
  hgvsp: ENSP00000371137.3:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.198G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.49G>T
  hgvsp: ENSP00000418555.1:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.49G>T
  hgvsp: ENSP00000371166.3:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.49G>T
  hgvsp: ENSP00000418904.1:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.49G>T
  hgvsp: ENSP00000371155.3:p.Val17Leu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.178G>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val17Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

13-25875964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875964
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875964
    reference: chr 13
allele count: 1
allele frequency: 8.723263198297218e-6
allele num: 114636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.53C>T
  hgvsp: ENSP00000371166.3:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.182C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.53C>T
  hgvsp: ENSP00000371137.3:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.53C>T
  hgvsp: ENSP00000418555.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.53C>T
  hgvsp: ENSP00000371155.3:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.53C>T
  hgvsp: ENSP00000418904.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.202C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.53C>T
  hgvsp: ENSP00000418244.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.202C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.196C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.53C>T
  hgvsp: ENSP00000418341.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala18Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

13-25875969-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875969
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875969
    reference: chr 13
allele count: 2
allele frequency: 1.745474856434693e-5
allele num: 114582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.58G>T
  hgvsp: ENSP00000418244.1:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.58G>T
  hgvsp: ENSP00000371155.3:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.201G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.58G>T
  hgvsp: ENSP00000371137.3:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.207G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.58G>T
  hgvsp: ENSP00000418555.1:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.58G>T
  hgvsp: ENSP00000418341.1:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.207G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.58G>T
  hgvsp: ENSP00000418904.1:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.187G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.58G>T
  hgvsp: ENSP00000371166.3:p.Gly20Cys
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly20Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

13-25875973-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875973
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875973
    reference: chr 13
allele count: 1
allele frequency: 8.722045843072952e-6
allele num: 114652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.211G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.62G>C
  hgvsp: ENSP00000371155.3:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.62G>C
  hgvsp: ENSP00000418244.1:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.62G>C
  hgvsp: ENSP00000418341.1:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.191G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.62G>C
  hgvsp: ENSP00000371137.3:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.62G>C
  hgvsp: ENSP00000418555.1:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.62G>C
  hgvsp: ENSP00000418904.1:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.62G>C
  hgvsp: ENSP00000371166.3:p.Gly21Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.211G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.205G>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly21Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

13-25875979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875979
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875979
    reference: chr 13
allele count: 2
allele frequency: 1.747243723026925e-5
allele num: 114466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.68G>A
  hgvsp: ENSP00000418904.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.68G>A
  hgvsp: ENSP00000418244.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.217G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.68G>A
  hgvsp: ENSP00000371137.3:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.68G>A
  hgvsp: ENSP00000418341.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.68G>A
  hgvsp: ENSP00000371166.3:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.68G>A
  hgvsp: ENSP00000371155.3:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.211G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.68G>A
  hgvsp: ENSP00000418555.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.197G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.217G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39238
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser23Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

13-25875985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875985
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875985
    reference: chr 13
allele count: 1
allele frequency: 8.732556717955883e-6
allele num: 114514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.217G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.223G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.74G>A
  hgvsp: ENSP00000418341.1:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.74G>A
  hgvsp: ENSP00000371155.3:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.74G>A
  hgvsp: ENSP00000371166.3:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.74G>A
  hgvsp: ENSP00000418904.1:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.74G>A
  hgvsp: ENSP00000418555.1:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.74G>A
  hgvsp: ENSP00000418244.1:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.223G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.74G>A
  hgvsp: ENSP00000371137.3:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.203G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly25Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

13-25875986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875986
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875986
    reference: chr 13
allele count: 2
allele frequency: 1.747243723026925e-5
allele num: 114466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.75C>T
  hgvsp: ENST00000490231.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.75C>T
  hgvsp: ENST00000481980.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.224C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.75C>T
  hgvsp: ENST00000465068.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.204C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.75C>T
  hgvsp: ENST00000381718.3:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.218C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.75C>T
  hgvsp: ENST00000381747.3:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.75C>T
  hgvsp: ENST00000381736.3:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.75C>T
  hgvsp: ENST00000463407.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.224C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly25Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

13-25875995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875995
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875995
    reference: chr 13
allele count: 2
allele frequency: 1.749444551354945e-5
allele num: 114322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.84C>T
  hgvsp: ENST00000481980.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.84C>T
  hgvsp: ENST00000465068.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.233C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.84C>T
  hgvsp: ENST00000381718.3:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.84C>T
  hgvsp: ENST00000381747.3:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.213C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.233C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.84C>T
  hgvsp: ENST00000381736.3:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.227C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.84C>T
  hgvsp: ENST00000490231.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.84C>T
  hgvsp: ENST00000463407.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe28Phe
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

13-25875997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875997
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875997
    reference: chr 13
allele count: 1
allele frequency: 8.754420982596212e-6
allele num: 114228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.86C>T
  hgvsp: ENSP00000418341.1:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.215C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.86C>T
  hgvsp: ENSP00000418904.1:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.86C>T
  hgvsp: ENSP00000371155.3:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.229C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.86C>T
  hgvsp: ENSP00000418244.1:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.235C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.86C>T
  hgvsp: ENSP00000418555.1:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.86C>T
  hgvsp: ENSP00000371166.3:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.235C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.86C>T
  hgvsp: ENSP00000371137.3:p.Ser29Phe
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser29Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

13-25875998-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25875998
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25875998
    reference: chr 13
allele count: 1
allele frequency: 8.756414073308699e-6
allele num: 114202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.87C>T
  hgvsp: ENST00000463407.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.236C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.87C>T
  hgvsp: ENST00000481980.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.230C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.216C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.87C>T
  hgvsp: ENST00000465068.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.236C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.87C>T
  hgvsp: ENST00000381718.3:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.87C>T
  hgvsp: ENST00000490231.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.87C>T
  hgvsp: ENST00000381736.3:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.87C>T
  hgvsp: ENST00000381747.3:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser29Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

13-25876001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876001
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876001
    reference: chr 13
allele count: 1
allele frequency: 8.777473492030055e-6
allele num: 113928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.90C>T
  hgvsp: ENST00000490231.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.90C>T
  hgvsp: ENST00000481980.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.239C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.233C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.90C>T
  hgvsp: ENST00000381747.3:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.219C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.90C>T
  hgvsp: ENST00000465068.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.90C>T
  hgvsp: ENST00000381718.3:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.90C>T
  hgvsp: ENST00000381736.3:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.90C>T
  hgvsp: ENST00000463407.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.239C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe30Phe
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

13-25876003-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876003
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876003
    reference: chr 13
allele count: 1
allele frequency: 8.79600309619309e-6
allele num: 113688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.241G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.92G>C
  hgvsp: ENSP00000371137.3:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.235G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.92G>C
  hgvsp: ENSP00000371166.3:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.92G>C
  hgvsp: ENSP00000418341.1:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.92G>C
  hgvsp: ENSP00000371155.3:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.241G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.221G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.92G>C
  hgvsp: ENSP00000418904.1:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.92G>C
  hgvsp: ENSP00000418244.1:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.92G>C
  hgvsp: ENSP00000418555.1:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly31Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/13-25876004-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876004
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876004
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 113734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.93A>C
  hgvsp: ENST00000490231.1:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.236A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.93A>C
  hgvsp: ENST00000381747.3:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.93A>C
  hgvsp: ENST00000463407.1:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.93A>C
  hgvsp: ENST00000481980.1:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.93A>C
  hgvsp: ENST00000381736.3:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.93A>C
  hgvsp: ENST00000465068.1:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.222A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.242A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.93A>C
  hgvsp: ENST00000381718.3:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.242A>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly31Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

13-25876006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876006
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876006
    reference: chr 13
allele count: 7
allele frequency: 6.16631430584919e-5
allele num: 113520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.244C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.95C>T
  hgvsp: ENSP00000418341.1:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.95C>T
  hgvsp: ENSP00000371155.3:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.95C>T
  hgvsp: ENSP00000418555.1:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.95C>T
  hgvsp: ENSP00000371166.3:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.244C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.95C>T
  hgvsp: ENSP00000418904.1:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.95C>T
  hgvsp: ENSP00000418244.1:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.95C>T
  hgvsp: ENSP00000371137.3:p.Thr32Met
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.238C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.224C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr32Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

13-25876007-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876007
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876007
    reference: chr 13
allele count: 1693
allele frequency: 1.493524824446875e-2
allele num: 113356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.96G>C
  hgvsp: ENST00000481980.1:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.96G>C
  hgvsp: ENST00000381736.3:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.96G>C
  hgvsp: ENST00000465068.1:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.96G>C
  hgvsp: ENST00000381718.3:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.239G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.96G>C
  hgvsp: ENST00000381747.3:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.245G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.96G>C
  hgvsp: ENST00000490231.1:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.225G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.245G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.96G>C
  hgvsp: ENST00000463407.1:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 1.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33744
  bin: 2.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 1.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Thr32Thr
num of homozygotes: 20
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

13-25876008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876008
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876008
    reference: chr 13
allele count: 1
allele frequency: 8.853474988933156e-6
allele num: 112950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.97G>A
  hgvsp: ENSP00000418555.1:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.246G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.97G>A
  hgvsp: ENSP00000371166.3:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.97G>A
  hgvsp: ENSP00000371155.3:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.246G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.97G>A
  hgvsp: ENSP00000371137.3:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.226G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.97G>A
  hgvsp: ENSP00000418904.1:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.97G>A
  hgvsp: ENSP00000418244.1:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.97G>A
  hgvsp: ENSP00000418341.1:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.240G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32688
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly33Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

13-25876009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876009
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876009
    reference: chr 13
allele count: 2
allele frequency: 1.770851779706039e-5
allele num: 112940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.98G>A
  hgvsp: ENSP00000371137.3:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.247G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.98G>A
  hgvsp: ENSP00000418244.1:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.98G>A
  hgvsp: ENSP00000418555.1:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.247G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.98G>A
  hgvsp: ENSP00000371155.3:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.98G>A
  hgvsp: ENSP00000371166.3:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.98G>A
  hgvsp: ENSP00000418904.1:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.227G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.241G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.98G>A
  hgvsp: ENSP00000418341.1:p.Gly33Glu
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly33Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

13-25876011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876011
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876011
    reference: chr 13
allele count: 55950
allele frequency: 4.93987392064417e-1
allele num: 113262
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.100G>A
  hgvsp: ENSP00000371155.3:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.229G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.243G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.100G>A
  hgvsp: ENSP00000418904.1:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.100G>A
  hgvsp: ENSP00000418555.1:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.249G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.100G>A
  hgvsp: ENSP00000418244.1:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.100G>A
  hgvsp: ENSP00000371137.3:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.100G>A
  hgvsp: ENSP00000418341.1:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.100G>A
  hgvsp: ENSP00000371166.3:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.249G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.25e1
  variant carriers: 6700
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.75e1
  variant carriers: 625
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 422
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 1.25e1
  variant carriers: 2250
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 7.5e0
  variant carriers: 882
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 3362
genotype depth: GenotypeDepth
  all individuals: 10721
  bin: 2.75e1
  variant carriers: 7805
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 3.25e1
  variant carriers: 7118
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 1.75e1
  variant carriers: 4157
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.75e1
  variant carriers: 1969
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 5.25e1
  variant carriers: 1138
genotype quality: GenotypeQuality
hgvs: p.Ala34Thr
num of homozygotes: 14263
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

13-25876012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876012
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876012
    reference: chr 13
allele count: 1
allele frequency: 9.432360542549379e-6
allele num: 106018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.101C>T
  hgvsp: ENSP00000418341.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.101C>T
  hgvsp: ENSP00000371166.3:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.101C>T
  hgvsp: ENSP00000418904.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.250C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.230C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.101C>T
  hgvsp: ENSP00000371137.3:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.244C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.250C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.101C>T
  hgvsp: ENSP00000371155.3:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.101C>T
  hgvsp: ENSP00000418555.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.101C>T
  hgvsp: ENSP00000418244.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala34Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

13-25876013-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876013
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876013
    reference: chr 13
allele count: 5
allele frequency: 4.738348401281249e-5
allele num: 105522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.251G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.102G>C
  hgvsp: ENST00000381747.3:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.102G>C
  hgvsp: ENST00000381718.3:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.102G>C
  hgvsp: ENST00000463407.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.102G>C
  hgvsp: ENST00000381736.3:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.245G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.102G>C
  hgvsp: ENST00000465068.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.102G>C
  hgvsp: ENST00000481980.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.102G>C
  hgvsp: ENST00000490231.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.231G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.251G>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala34Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

13-25876016-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876016
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876016
    reference: chr 13
allele count: 1
allele frequency: 9.648411871405967e-6
allele num: 103644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.254T>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.105T>G
  hgvsp: ENST00000481980.1:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.105T>G
  hgvsp: ENST00000490231.1:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.105T>G
  hgvsp: ENST00000465068.1:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.234T>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.105T>G
  hgvsp: ENST00000381747.3:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.105T>G
  hgvsp: ENST00000381736.3:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.105T>G
  hgvsp: ENST00000381718.3:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.248T>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.105T>G
  hgvsp: ENST00000463407.1:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.254T>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17407
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.105T>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

13-25876017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876017
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876017
    reference: chr 13
allele count: 2
allele frequency: 1.94507118960554e-5
allele num: 102824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.255A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.106A>G
  hgvsp: ENSP00000371137.3:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.106A>G
  hgvsp: ENSP00000418904.1:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.106A>G
  hgvsp: ENSP00000371155.3:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.106A>G
  hgvsp: ENSP00000371166.3:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.249A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.106A>G
  hgvsp: ENSP00000418555.1:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.106A>G
  hgvsp: ENSP00000418341.1:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.106A>G
  hgvsp: ENSP00000418244.1:p.Arg36Gly
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.235A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.255A>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser36Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

13-25876021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876021
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876021
    reference: chr 13
allele count: 3
allele frequency: 2.964368293116737e-5
allele num: 101202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+3A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+3A>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.107+3A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

13-25876021-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876021
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876021
    reference: chr 13
allele count: 2
allele frequency: 1.976245528744491e-5
allele num: 101202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+3A>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+3A>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.107+3A>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

13-25876025-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876025
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876025
    reference: chr 13
allele count: 1
allele frequency: 1.040842666222574e-5
allele num: 96076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+7G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+7G>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.107+7G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/13-25876027-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876027
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876027
    reference: chr 13
allele count: 1
allele frequency: 1.041362935810389e-5
allele num: 96028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+9A>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

13-25876032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876032
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876032
    reference: chr 13
allele count: 405
allele frequency: 4.426423013027892e-3
allele num: 91496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+14C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23998
  bin: 1.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 2.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 1.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 16
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

13-25876037-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876037
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876037
    reference: chr 13
allele count: 2
allele frequency: 2.317980575322779e-5
allele num: 86282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+19C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+19C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30096
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

13-25876042-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876042
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876042
    reference: chr 13
allele count: 3
allele frequency: 3.684598378776714e-5
allele num: 81420
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+24T>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+24T>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26825
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5375
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

13-25876044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876044
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876044
    reference: chr 13
allele count: 1
allele frequency: 1.24713159732615e-5
allele num: 80184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+26G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+26G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26783
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

13-25876046-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876046
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876046
    reference: chr 13
allele count: 1
allele frequency: 1.311819493637675e-5
allele num: 76230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+28C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+28C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/13-25876047-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876047
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876047
    reference: chr 13
allele count: 84
allele frequency: 1.101870556444631e-3
allele num: 76234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+29C>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+29C>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26293
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15743
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28489
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

13-25876048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876048
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876048
    reference: chr 13
allele count: 1
allele frequency: 1.329893342553927e-5
allele num: 75194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+30G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26379
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

13-25876050-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876050
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876050
    reference: chr 13
allele count: 2
allele frequency: 2.745517941959751e-5
allele num: 72846
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+32A>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+32A>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

13-25876052-T-TCACCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876052
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876058
    reference: chr 13
allele count: 1
allele frequency: 1.390008618053432e-5
allele num: 71942
alternate allele: TCACCCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+48_236+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+48_256+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+48_250+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+48_256+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+48_107+53dupACCCCC
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 17065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/13-25876054-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876054
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876054
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 52562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+36A>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

13-25876063-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876063
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876063
    reference: chr 13
allele count: 4
allele frequency: 7.750135627373479e-5
allele num: 51612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+45C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+45C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18100
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

13-25876067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876067
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876067
    reference: chr 13
allele count: 3
allele frequency: 6.026516673362796e-5
allele num: 49780
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+49C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+49C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17567
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25820
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

13-25876069-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25876069
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25876069
    reference: chr 13
allele count: 1
allele frequency: 2.053135137354741e-5
allele num: 48706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+51C>G
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+51C>G
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17594
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

13-25877017-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877017
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877017
    reference: chr 13
allele count: 1
allele frequency: 8.882572392965002e-5
allele num: 11258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.108-48G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-223G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+999G>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+999G>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

13-25877047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877047
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877047
    reference: chr 13
allele count: 1
allele frequency: 8.570449091532397e-5
allele num: 11668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-193G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1029G>A
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.108-18G>A
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

13-25877049-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877049
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877049
    reference: chr 13
allele count: 64
allele frequency: 5.4691505725517e-3
allele num: 11702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.108-16T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-191T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1031T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1031T>C
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

13-25877053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877053
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877053
    reference: chr 13
allele count: 1
allele frequency: 8.493290300662476e-5
allele num: 11774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.108-12C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-187C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1035C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1035C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

13-25877074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877074
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877074
    reference: chr 13
allele count: 1
allele frequency: 8.202099737532808e-5
allele num: 12192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.117C>T
  hgvsp: ENST00000481980.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-166C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1056C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1056C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr39Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

13-25877080-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877080
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877080
    reference: chr 13
allele count: 52
allele frequency: 4.251839738348324e-3
allele num: 12230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.123T>C
  hgvsp: ENST00000481980.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-160T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1062T>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1062T>C
  variant of: http://identifiers.org/hgnc/20261
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu41Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

13-25877082-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877082
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877082
    reference: chr 13
allele count: 3
allele frequency: 2.450980392156863e-4
allele num: 12240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.125G>C
  hgvsp: ENSP00000418341.1:p.Arg42Thr
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-158G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1064G>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1064G>C
  variant of: http://identifiers.org/hgnc/20261
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg42Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP

13-25877102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877102
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877102
    reference: chr 13
allele count: 5
allele frequency: 4.068348250610252e-4
allele num: 12290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.145C>T
  hgvsp: ENSP00000418341.1:p.Gln49Ter
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1084C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-138C>T
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1084C>T
  variant of: http://identifiers.org/hgnc/20261
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln49Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-25877103-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877103
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877103
    reference: chr 13
allele count: 1
allele frequency: 8.134049129656744e-5
allele num: 12294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-137A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.146A>C
  hgvsp: ENSP00000418341.1:p.Gln49Pro
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1085A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1085A>C
  variant of: http://identifiers.org/hgnc/20261
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln49Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/13-25877104-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25877104
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 25877104
    reference: chr 13
allele count: 3
allele frequency: 2.440611780019525e-4
allele num: 12292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418341
  ensembl transcript: ENST00000481980
  gene symbol: NUPL1
  hgvsc: ENST00000481980.1:c.147A>C
  hgvsp: ENSP00000418341.1:p.Gln49His
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000480187
  gene symbol: NUPL1
  hgvsc: ENST00000480187.1:n.256+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371155
  ensembl transcript: ENST00000381736
  gene symbol: NUPL1
  hgvsc: ENST00000381736.3:c.107+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418904
  ensembl transcript: ENST00000465068
  gene symbol: NUPL1
  hgvsc: ENST00000465068.1:c.107+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371166
  ensembl transcript: ENST00000381747
  gene symbol: NUPL1
  hgvsc: ENST00000381747.3:c.107+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000466694
  gene symbol: NUPL1
  hgvsc: ENST00000466694.1:n.250+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418555
  ensembl transcript: ENST00000463407
  gene symbol: NUPL1
  hgvsc: ENST00000463407.1:c.107+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000495460
  gene symbol: NUPL1
  hgvsc: ENST00000495460.1:n.236+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000418244
  ensembl transcript: ENST00000490231
  gene symbol: NUPL1
  hgvsc: ENST00000490231.1:c.108-136A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl protein: ENSP00000371137
  ensembl transcript: ENST00000381718
  gene symbol: NUPL1
  hgvsc: ENST00000381718.3:c.107+1086A>C
  variant of: http://identifiers.org/hgnc/20261
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139496
  ensembl transcript: ENST00000460326
  gene symbol: NUPL1
  hgvsc: ENST00000460326.1:n.256+1086A>C
  variant of: http://identifiers.org/hgnc/20261
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln49His
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 3520
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.095530236634531e-4
allele num: 9128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.148e1

VQSLOD
type: SiteQuality
SIO_000300: -2.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

DP
type: SiteQuality
SIO_000300: 8.20254e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.051e0

GenotypeQuality
all individuals: 385
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.081664098613251e-5
allele num: 32450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.092e0

DP
type: SiteQuality
SIO_000300: 8.53562e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.367e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 416
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1532
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.422993492407809e-4
allele num: 5532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.028817748839453e-5
allele num: 33174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

QD
type: SiteQuality
SIO_000300: 1.015e1

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

DP
type: SiteQuality
SIO_000300: 8.63209e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

GenotypeQuality
all individuals: 315
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1511
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2912
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.932207365704903e-5
allele num: 34104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.82372e5

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

QD
type: SiteQuality
SIO_000300: 1.35e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 19914
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.639940608760208e-5
allele num: 43104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.9708e1

QD
type: SiteQuality
SIO_000300: 1.057e1

MQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.886e0

DP
type: SiteQuality
SIO_000300: 1.019437e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.257438259063614e-5
allele num: 44298
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.102e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.68e0

DP
type: SiteQuality
SIO_000300: 1.040234e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.933989209774674e-5
allele num: 12604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.107193e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

GenotypeQuality
all individuals: 867
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variant carriers: 0

GenotypeQuality
all individuals: 294
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1062
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.902515124995244e-5
allele num: 52562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13258
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.173315e6

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.323101349563376e-4
allele num: 7558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13822
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.221985e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 689

GenotypeQuality
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bin: 6.25e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.151154452889718e-4
allele num: 13946
num of homozygotes: 0

Latino
type: Population
allele count: 54
allele frequency: 5.573905862923204e-3
allele num: 9688
num of homozygotes: 0

African
type: Population
allele count: 633
allele frequency: 7.489351632749645e-2
allele num: 8452
num of homozygotes: 17

Other
type: Population
allele count: 3
allele frequency: 4.24929178470255e-3
allele num: 706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 5.52624073017684e-4
allele num: 56096
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

DP
type: SiteQuality
SIO_000300: 1.238858e6

BaseQRankSum
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SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.53e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.086987486010784e-5
allele num: 58974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

DP
type: SiteQuality
SIO_000300: 1.286426e6

GenotypeDepth
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6142
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.52018278750952e-5
allele num: 10504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.307945e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 3.393e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 3.539e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.217e0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeDepth
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41663
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5350
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.5e0
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GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4775
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.276862076875184e-5
allele num: 61034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 2.998e0

DP
type: SiteQuality
SIO_000300: 1.323905e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

GenotypeDepth
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 4160
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variant carriers: 0

GenotypeQuality
all individuals: 43008
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variant carriers: 0

GenotypeQuality
all individuals: 363
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
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variant carriers: 0

GenotypeQuality
all individuals: 4958
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variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603129308410016e-5
allele num: 62378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10982
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.302e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 8.77e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 8.18e0

DP
type: SiteQuality
SIO_000300: 1.354282e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.35e-1

GenotypeDepth
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43243
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variant carriers: 0

GenotypeQuality
all individuals: 3990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5019
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 373
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variant carriers: 0

GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.081002542680712e-5
allele num: 11012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.039e0

DP
type: SiteQuality
SIO_000300: 1.358065e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.072e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43418
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 5053
bin: 6.75e1
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 900
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 350
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GenotypeQuality
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GenotypeQuality
all individuals: 1592
bin: 9.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.290890790135883e-5
allele num: 15896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.134e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.36327e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQ
type: SiteQuality
SIO_000300: 5.876e1

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1596
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variant carriers: 4

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.347997206881229e-5
allele num: 63012
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 3.57e0

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

DP
type: SiteQuality
SIO_000300: 1.364965e6

QD
type: SiteQuality
SIO_000300: 1.172e1

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
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SIO_000300: -2.248e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 94
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GenotypeQuality
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GenotypeQuality
all individuals: 3567
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 229
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 396
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GenotypeQuality
all individuals: 1533
bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.997660608241857e-5
allele num: 11114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

QD
type: SiteQuality
SIO_000300: 1.529e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 1.364751e6

MQ
type: SiteQuality
SIO_000300: 6.022e1

GenotypeDepth
all individuals: 271
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variant carriers: 2

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 458
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GenotypeQuality
all individuals: 323
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.926945272369839e-5
allele num: 63076
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.246882793017456e-3
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.797268152408339e-4
allele num: 11128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.25e-4
allele num: 16000
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.488e0

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.265e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.367419e6

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 893
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63152
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054407423028258e-4
allele num: 9484
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
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SIO_000300: 6.11e-1

DP
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SIO_000300: 1.369323e6

MQRankSum
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SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1468
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5029
bin: 6.75e1
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GenotypeQuality
all individuals: 640
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580877703300873e-5
allele num: 63256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.714e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.576e0

DP
type: SiteQuality
SIO_000300: 1.370502e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.51e-2

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 323
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4980
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variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.249063202598052e-4
allele num: 16012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.266e0

DP
type: SiteQuality
SIO_000300: 1.36814e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.89e-1

FS
type: SiteQuality
SIO_000300: 3.673e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 9.73e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 251
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42047
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580827721394922e-5
allele num: 63258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.862e1

DP
type: SiteQuality
SIO_000300: 1.365269e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
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SIO_000300: -9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.362e0

QD
type: SiteQuality
SIO_000300: 9.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40734
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583330694448843e-5
allele num: 63158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.997660608241857e-5
allele num: 11114
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.4e-3

QD
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BaseQRankSum
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SIO_000300: -1.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

DP
type: SiteQuality
SIO_000300: 1.359361e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4962
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582078217947095e-5
allele num: 63208
num of homozygotes: 0

Other
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South Asian
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FS
type: SiteQuality
SIO_000300: 2.372e0

VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.923e1

InbreedingCoeff
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DP
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63196
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.369106846718787e-4
allele num: 8442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.027e0

InbreedingCoeff
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SIO_000300: -5.0e-4

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.373042240151875e-4
allele num: 8428
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.584484725567246e-5
allele num: 63112
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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SIO_000300: 1.344791e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63118
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 800
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
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SIO_000300: -1.3e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.306760847628658e-5
allele num: 15856
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63018
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11020
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62926
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.19019281123542e-4
allele num: 8402
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Other
type: Population
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 62958
num of homozygotes: 0

East Asian
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Other
type: Population
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Latino
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European (Finnish)
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South Asian
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African
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590786166523496e-5
allele num: 62862
num of homozygotes: 0

African
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allele frequency: 6.511829824180595e-4
allele num: 9214
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.9419e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

QD
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SIO_000300: 9.539999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.333786e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

GenotypeDepth
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 469
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1580
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 31347
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4683
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1713
bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 4

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1488
bin: 7.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 5

GenotypeQuality
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bin: 9.75e1
variant carriers: 1640

GenotypeQuality
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bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2425
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 865
bin: 8.25e1
variant carriers: 9

Other
type: Population
allele count: 21
allele frequency: 2.631578947368421e-2
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 4.035776614310645e-3
allele num: 9168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 50
allele frequency: 9.087604507451835e-3
allele num: 5502
num of homozygotes: 0

Latino
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allele count: 94
allele frequency: 8.590751233778103e-3
allele num: 10942
num of homozygotes: 2

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
type: Population
allele count: 179
allele frequency: 1.133772485431974e-2
allele num: 15788
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1312
allele frequency: 2.089904106534136e-2
allele num: 62778
num of homozygotes: 14

BaseQRankSum
type: SiteQuality
SIO_000300: -1.852e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 1.34966e6

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeDepth
all individuals: 10125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.096731739416539e-4
allele num: 9118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.716e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 1.338094e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.904e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

GenotypeDepth
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29983
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variant carriers: 0

GenotypeQuality
all individuals: 4810
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variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.195871761089152e-4
allele num: 9108
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

DP
type: SiteQuality
SIO_000300: 1.338655e6

FS
type: SiteQuality
SIO_000300: 3.079e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 9.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 5577
bin: 3.75e1
variant carriers: 5335

GenotypeQuality
all individuals: 471
bin: 2.5e0
variant carriers: 70

GenotypeQuality
all individuals: 654
bin: 3.75e1
variant carriers: 462

GenotypeQuality
all individuals: 799
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variant carriers: 385

GenotypeQuality
all individuals: 207
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variant carriers: 119

GenotypeQuality
all individuals: 883
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variant carriers: 676

GenotypeQuality
all individuals: 735
bin: 2.75e1
variant carriers: 230

GenotypeQuality
all individuals: 670
bin: 5.75e1
variant carriers: 471

GenotypeQuality
all individuals: 372
bin: 7.5e0
variant carriers: 102

GenotypeQuality
all individuals: 735
bin: 7.25e1
variant carriers: 581

GenotypeQuality
all individuals: 329
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variant carriers: 196

GenotypeQuality
all individuals: 10294
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variant carriers: 883

GenotypeQuality
all individuals: 1187
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variant carriers: 1056

GenotypeQuality
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variant carriers: 32785

GenotypeQuality
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variant carriers: 253

GenotypeQuality
all individuals: 791
bin: 4.75e1
variant carriers: 591

GenotypeQuality
all individuals: 1154
bin: 8.25e1
variant carriers: 1092

GenotypeQuality
all individuals: 1090
bin: 9.25e1
variant carriers: 1044

GenotypeQuality
all individuals: 487
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variant carriers: 331

GenotypeQuality
all individuals: 651
bin: 8.75e1
variant carriers: 602

GenotypeQuality
all individuals: 1849
bin: 6.75e1
variant carriers: 1003

European (Finnish)
type: Population
allele count: 3086
allele frequency: 5.485247067188056e-1
allele num: 5626
num of homozygotes: 817

East Asian
type: Population
allele count: 5059
allele frequency: 6.07177148343735e-1
allele num: 8332
num of homozygotes: 1507

Other
type: Population
allele count: 414
allele frequency: 5.024271844660194e-1
allele num: 824
num of homozygotes: 104

Latino
type: Population
allele count: 4262
allele frequency: 3.960966542750929e-1
allele num: 10760
num of homozygotes: 808

African
type: Population
allele count: 1320
allele frequency: 1.44451739986868e-1
allele num: 9138
num of homozygotes: 96

European (Non-Finnish)
type: Population
allele count: 34031
allele frequency: 5.423785541246972e-1
allele num: 62744
num of homozygotes: 9037

South Asian
type: Population
allele count: 7778
allele frequency: 4.91097360777876e-1
allele num: 15838
num of homozygotes: 1894

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

QD
type: SiteQuality
SIO_000300: 2.033e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.16e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.353e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 1.696505e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeDepth
all individuals: 239
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 1815
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variant carriers: 0

GenotypeQuality
all individuals: 354
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variant carriers: 0

GenotypeQuality
all individuals: 13863
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 638
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.70543693294222e-5
allele num: 58636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
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SIO_000300: 5.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
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SIO_000300: 7.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.314174e6

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14484
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.665080444142307e-4
allele num: 8826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14718
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.301268e6

GenotypeDepth
all individuals: 165
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 25
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GenotypeQuality
all individuals: 41
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 162
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 136
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747762863534676e-5
allele num: 57216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
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FS
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QD
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SIO_000300: 8.699999999999999e0

BaseQRankSum
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SIO_000300: 3.84e0

MQ
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SIO_000300: 5.989e1

InbreedingCoeff
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SIO_000300: -2.9e-3

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQRankSum
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SIO_000300: 6.45e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56750
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.38792505204719e-4
allele num: 14410
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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SIO_000300: 6.591e0

QD
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SIO_000300: 9.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.646e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.792628710741431e-5
allele num: 55784
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 7.014590347923682e-5
allele num: 14256
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

Latino
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allele frequency: 1.034554107179805e-4
allele num: 9666
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 6.12e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
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ReadPosRankSum
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SIO_000300: 5.16e-1

BaseQRankSum
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SIO_000300: 3.03e0

VQSLOD
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SIO_000300: 3.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 1.191957e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1000
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.585257421482863e-5
allele num: 55784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

QD
type: SiteQuality
SIO_000300: 1.314e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 1.191957e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeDepth
all individuals: 35
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variant carriers: 0

GenotypeDepth
all individuals: 721
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 525
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GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52968
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 8246
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Other
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.961e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 3.084e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3120
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.404494382022472e-4
allele num: 7120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52926
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African
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

DP
type: SiteQuality
SIO_000300: 1.065797e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 4

Latino
type: Population
allele count: 18
allele frequency: 2.092050209205021e-3
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.942496326595449e-5
allele num: 50362
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 7.604562737642586e-5
allele num: 13150
num of homozygotes: 0

African
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allele count: 381
allele frequency: 4.819124715406021e-2
allele num: 7906
num of homozygotes: 16

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Other
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1253
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 592
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.590583744234134e-4
allele num: 12574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.63498e5

QD
type: SiteQuality
SIO_000300: 1.635e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.566e0

GenotypeQuality
all individuals: 29849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.703611011798355e-5
allele num: 44752
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

DP
type: SiteQuality
SIO_000300: 7.99773e5

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

GenotypeQuality
all individuals: 1391
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1009
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.346257404415724e-4
allele num: 7428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11976
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

DP
type: SiteQuality
SIO_000300: 7.85077e5

QD
type: SiteQuality
SIO_000300: 1.456e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.475e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1796
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.768659356207994e-4
allele num: 5654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 7.54627e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.136e-1

QD
type: SiteQuality
SIO_000300: 8.69e0

GenotypeQuality
all individuals: 1874
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variant carriers: 1

GenotypeQuality
all individuals: 316
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 1044
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variant carriers: 80

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 114
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variant carriers: 3

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.124178484953303e-3
allele num: 11564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 5.988023952095809e-3
allele num: 3006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 1.242354740061162e-3
allele num: 41856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.851851851851852e-3
allele num: 540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

DP
type: SiteQuality
SIO_000300: 7.52553e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6655
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 301
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.457301078402798e-4
allele num: 6862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41284
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 2.982e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

DP
type: SiteQuality
SIO_000300: 7.49803e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.003752814610959e-5
allele num: 39970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.109e1

VQSLOD
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 7.22091e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.575795776867318e-4
allele num: 6346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

FS
type: SiteQuality
SIO_000300: 1.771e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.251e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

DP
type: SiteQuality
SIO_000300: 7.13537e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 256
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GenotypeQuality
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GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 167
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East Asian
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African
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European (Non-Finnish)
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Other
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Latino
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South Asian
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Other
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MQ
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QD
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ReadPosRankSum
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DP
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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MQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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DP
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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European (Finnish)
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Other
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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QD
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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African
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South Asian
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.0e-3
allele num: 200
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 3.62e0

QD
type: SiteQuality
SIO_000300: 1.251e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

DP
type: SiteQuality
SIO_000300: 1.60983e5

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 52

GenotypeQuality
all individuals: 114
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 1.607142857142857e-2
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 4.182933630786392e-3
allele num: 3586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 3.570483998942079e-3
allele num: 7562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.62578e5

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 1.174e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

GenotypeQuality
all individuals: 342
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.960918933192501e-4
allele num: 7574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e0

QD
type: SiteQuality
SIO_000300: 1.153e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.186e-1

FS
type: SiteQuality
SIO_000300: 3.723e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

DP
type: SiteQuality
SIO_000300: 1.62158e5

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.389660922734853e-3
allele num: 3598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

DP
type: SiteQuality
SIO_000300: 1.62821e5

FS
type: SiteQuality
SIO_000300: 7.371e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.621e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.785714285714286e-3
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.83e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 1.62815e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0