1-100327200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327200
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327200
    reference: chr 1
allele count: 5
allele frequency: 4.130251614928381e-5
allele num: 121058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.224A>G
  hgvsp: ENSP00000359182.3:p.Asp75Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.224A>G
  hgvsp: ENSP00000359184.3:p.Asp75Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.224A>G
  hgvsp: ENSP00000294724.4:p.Asp75Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.224A>G
  hgvsp: ENSP00000355106.3:p.Asp75Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.176A>G
  hgvsp: ENSP00000359180.2:p.Asp59Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.173A>G
  hgvsp: ENSP00000354635.4:p.Asp58Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.176A>G
  hgvsp: ENSP00000354971.3:p.Asp59Gly
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27764
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp75Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-100327211-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327211
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327212
    reference: chr 1
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.184_185insT
  hgvsp: ENSP00000354635.4:p.Lys62IlefsTer4
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.235_236insT
  hgvsp: ENSP00000359184.3:p.Lys79IlefsTer4
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.235_236insT
  hgvsp: ENSP00000355106.3:p.Lys79IlefsTer4
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.187_188insT
  hgvsp: ENSP00000359180.2:p.Lys63IlefsTer4
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.235_236insT
  hgvsp: ENSP00000359182.3:p.Lys79IlefsTer4
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.187_188insT
  hgvsp: ENSP00000354971.3:p.Lys63IlefsTer4
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.235_236insT
  hgvsp: ENSP00000294724.4:p.Lys79IlefsTer4
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13251
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys79IlefsTer4
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-100327216-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327216
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327216
    reference: chr 1
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.240C>G
  hgvsp: ENSP00000359184.3:p.Tyr80Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.240C>G
  hgvsp: ENSP00000294724.4:p.Tyr80Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.240C>G
  hgvsp: ENSP00000355106.3:p.Tyr80Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.192C>G
  hgvsp: ENSP00000359180.2:p.Tyr64Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.240C>G
  hgvsp: ENSP00000359182.3:p.Tyr80Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.189C>G
  hgvsp: ENSP00000354635.4:p.Tyr63Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.192C>G
  hgvsp: ENSP00000354971.3:p.Tyr64Ter
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13254
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr80Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

1-100327216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327216
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327216
    reference: chr 1
allele count: 2
allele frequency: 1.652127940787734e-5
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.240C>T
  hgvsp: ENST00000370165.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.192C>T
  hgvsp: ENST00000361302.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.240C>T
  hgvsp: ENST00000294724.4:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.189C>T
  hgvsp: ENST00000361522.4:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.240C>T
  hgvsp: ENST00000370163.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.192C>T
  hgvsp: ENST00000370161.2:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.240C>T
  hgvsp: ENST00000361915.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6455
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr80Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-100327217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327217
    reference: chr 1
allele count: 11
allele frequency: 9.086853800783122e-5
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.241T>C
  hgvsp: ENSP00000294724.4:p.Cys81Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.241T>C
  hgvsp: ENSP00000355106.3:p.Cys81Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.241T>C
  hgvsp: ENSP00000359182.3:p.Cys81Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.193T>C
  hgvsp: ENSP00000354971.3:p.Cys65Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.193T>C
  hgvsp: ENSP00000359180.2:p.Cys65Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.241T>C
  hgvsp: ENSP00000359184.3:p.Cys81Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.190T>C
  hgvsp: ENSP00000354635.4:p.Cys64Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11507
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13266
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys81Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

1-100327224-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327224
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327224
    reference: chr 1
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.200T>G
  hgvsp: ENSP00000354971.3:p.Leu67Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.197T>G
  hgvsp: ENSP00000354635.4:p.Leu66Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.248T>G
  hgvsp: ENSP00000355106.3:p.Leu83Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.200T>G
  hgvsp: ENSP00000359180.2:p.Leu67Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.248T>G
  hgvsp: ENSP00000359182.3:p.Leu83Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.248T>G
  hgvsp: ENSP00000359184.3:p.Leu83Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.248T>G
  hgvsp: ENSP00000294724.4:p.Leu83Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu83Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

1-100327225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327225
    reference: chr 1
allele count: 2
allele frequency: 1.652209830648492e-5
allele num: 121050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.249T>C
  hgvsp: ENST00000370163.3:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.201T>C
  hgvsp: ENST00000370161.2:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.249T>C
  hgvsp: ENST00000294724.4:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.198T>C
  hgvsp: ENST00000361522.4:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.249T>C
  hgvsp: ENST00000370165.3:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.201T>C
  hgvsp: ENST00000361302.3:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.249T>C
  hgvsp: ENST00000361915.3:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu83Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-100327225-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327226
    reference: chr 1
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.251dupA
  hgvsp: ENSP00000359184.3:p.Asn84LysfsTer17
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.251dupA
  hgvsp: ENSP00000359182.3:p.Asn84LysfsTer17
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.251dupA
  hgvsp: ENSP00000294724.4:p.Asn84LysfsTer17
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.203dupA
  hgvsp: ENSP00000354971.3:p.Asn68LysfsTer17
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.251dupA
  hgvsp: ENSP00000355106.3:p.Asn84LysfsTer17
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.203dupA
  hgvsp: ENSP00000359180.2:p.Asn68LysfsTer17
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.200dupA
  hgvsp: ENSP00000354635.4:p.Asn67LysfsTer17
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn84LysfsTer17
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-100327232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327232
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327232
    reference: chr 1
allele count: 3
allele frequency: 2.478970070568015e-5
allele num: 121018
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.256C>T
  hgvsp: ENSP00000294724.4:p.Gln86Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.256C>T
  hgvsp: ENSP00000359182.3:p.Gln86Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.208C>T
  hgvsp: ENSP00000359180.2:p.Gln70Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.256C>T
  hgvsp: ENSP00000359184.3:p.Gln86Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.205C>T
  hgvsp: ENSP00000354635.4:p.Gln69Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.208C>T
  hgvsp: ENSP00000354971.3:p.Gln70Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.256C>T
  hgvsp: ENSP00000355106.3:p.Gln86Ter
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln86Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-100327237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327237
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327237
    reference: chr 1
allele count: 2
allele frequency: 1.653247805313538e-5
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.213A>G
  hgvsp: ENST00000361302.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.213A>G
  hgvsp: ENST00000370161.2:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.210A>G
  hgvsp: ENST00000361522.4:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.261A>G
  hgvsp: ENST00000294724.4:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.261A>G
  hgvsp: ENST00000370165.3:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.261A>G
  hgvsp: ENST00000361915.3:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.261A>G
  hgvsp: ENST00000370163.3:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln87Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-100327241-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327241
    reference: chr 1
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.265G>T
  hgvsp: ENSP00000359182.3:p.Gly89Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.265G>T
  hgvsp: ENSP00000355106.3:p.Gly89Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.265G>T
  hgvsp: ENSP00000294724.4:p.Gly89Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.217G>T
  hgvsp: ENSP00000354971.3:p.Gly73Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.217G>T
  hgvsp: ENSP00000359180.2:p.Gly73Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.265G>T
  hgvsp: ENSP00000359184.3:p.Gly89Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.214G>T
  hgvsp: ENSP00000354635.4:p.Gly72Cys
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13273
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gly89Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-100327252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327252
    reference: chr 1
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.228G>A
  hgvsp: ENST00000361302.3:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.225G>A
  hgvsp: ENST00000361522.4:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.276G>A
  hgvsp: ENST00000361915.3:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.276G>A
  hgvsp: ENST00000370163.3:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.228G>A
  hgvsp: ENST00000370161.2:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.276G>A
  hgvsp: ENST00000294724.4:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.276G>A
  hgvsp: ENST00000370165.3:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln92Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-100327267-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327266
    reference: chr 1
allele count: 1
allele frequency: 8.277734549608463e-6
allele num: 120806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+1delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+1delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+1delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+1delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+1delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+1delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+1delG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6449
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: AG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

1-100327272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327272
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327272
    reference: chr 1
allele count: 9
allele frequency: 7.451318055371572e-5
allele num: 120784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+3A>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13279
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 27835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: c.293+3A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-100327276-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327276
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327276
    reference: chr 1
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+7C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+7C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+7C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+7C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+7C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+7C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+7C>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13279
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: c.293+7C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-100327278-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327278
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327278
    reference: chr 1
allele count: 2
allele frequency: 1.656122685568547e-5
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+9G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+9G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+9G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+9G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+9G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+9G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+9G>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13280
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-100327292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327292
    reference: chr 1
allele count: 20
allele frequency: 1.656863557286057e-4
allele num: 120710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+23G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+23G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+23G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+23G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+23G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+23G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+23G>A
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13292
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-100327292-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327292
    reference: chr 1
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+23G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+23G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+23G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+23G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+23G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+23G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+23G>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

1-100327313-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327314
    reference: chr 1
allele count: 3
allele frequency: 2.486902314477087e-5
allele num: 120632
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+45dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+45dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+45dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+45dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+45dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+45dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+45dupT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

1-100327313-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327313
    reference: chr 1
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.293+44C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.245+44C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.293+44C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.242+44C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.293+44C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.245+44C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.293+44C>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13284
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

1-100327762-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327762
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327761
    reference: chr 1
allele count: 3
allele frequency: 2.483032610494951e-5
allele num: 120820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-43delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-43delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-43delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-43delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-43delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-43delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-43delT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: AT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-100327769-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327769
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327769
    reference: chr 1
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-44T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-44T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-44T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-44T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-44T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-44T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-44T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-100327770-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327770
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327770
    reference: chr 1
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-43T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-43T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-43T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-43T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-43T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-43T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-43T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-100327775-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327775
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327775
    reference: chr 1
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-38C>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-38C>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-38C>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-38C>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-38C>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-38C>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-38C>A
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

1-100327778-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327778
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327778
    reference: chr 1
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-35T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
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genotype quality: GenotypeQuality
  all individuals: 19
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-100327782-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327782
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327781
    reference: chr 1
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-30delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-30delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-30delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-30delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-30delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-30delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-30delG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18541
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: TG
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-100327783-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327783
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327783
    reference: chr 1
allele count: 3
allele frequency: 2.476596166229135e-5
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-30G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-30G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-30G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-30G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-30G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-30G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-30G>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-100327785-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327785
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327785
    reference: chr 1
allele count: 7
allele frequency: 5.776912157924273e-5
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-28A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-28A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-28A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-28A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-28A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-28A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-28A>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19163
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-100327795-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327795
    reference: chr 1
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-18T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-18T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-18T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-18T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-18T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-18T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-18T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19162
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-100327799-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327800
    reference: chr 1
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-8dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-8dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-8dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-8dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-8dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-8dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-8dupT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19156
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18732
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-100327799-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327799
    reference: chr 1
allele count: 5
allele frequency: 4.120381052839767e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-14G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-14G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-14G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-14G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-14G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-14G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-14G>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-100327801-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327801
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-12T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-12T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-12T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-12T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-12T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-12T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-12T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10708
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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genotype depth: GenotypeDepth
  all individuals: 7122
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genotype depth: GenotypeDepth
  all individuals: 1203
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1793
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8624
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genotype depth: GenotypeDepth
  all individuals: 331
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genotype depth: GenotypeDepth
  all individuals: 2334
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genotype depth: GenotypeDepth
  all individuals: 1953
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18743
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-100327806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327806
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327806
    reference: chr 1
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-7C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-7C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-7C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-7C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-7C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-7C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-7C>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1204
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3241
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 2804
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.294-7C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-100327807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327807
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327807
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-6C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-6C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-6C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-6C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-6C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-6C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-6C>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 1435
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 914
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7775
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18769
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.294-6C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

1-100327808-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327808
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327807
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-3delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-3delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-3delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-3delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-3delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-3delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-3delT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7776
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: c.294-3delT
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: CT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-100327812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327812
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-1G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-1G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-1G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-1G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-1G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-1G>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-1G>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: c.294-1G>C
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-100327812-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327812
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246-1G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294-1G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294-1G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294-1G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243-1G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294-1G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246-1G>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7777
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
hgvs: c.294-1G>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

1-100327813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327813
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327813
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.243A>G
  hgvsp: ENST00000361522.4:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.246A>G
  hgvsp: ENST00000370161.2:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.246A>G
  hgvsp: ENST00000361302.3:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.294A>G
  hgvsp: ENST00000361915.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.294A>G
  hgvsp: ENST00000370165.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.294A>G
  hgvsp: ENST00000370163.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.294A>G
  hgvsp: ENST00000294724.4:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: c.294A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

1-100327815-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327815
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.296A>G
  hgvsp: ENSP00000359182.3:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.248A>G
  hgvsp: ENSP00000359180.2:p.Asn83Ser
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.296A>G
  hgvsp: ENSP00000359184.3:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.248A>G
  hgvsp: ENSP00000354971.3:p.Asn83Ser
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.296A>G
  hgvsp: ENSP00000294724.4:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.296A>G
  hgvsp: ENSP00000355106.3:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.245A>G
  hgvsp: ENSP00000354635.4:p.Asn82Ser
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn99Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-100327817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327817
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327817
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.298G>A
  hgvsp: ENSP00000359182.3:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.298G>A
  hgvsp: ENSP00000294724.4:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.250G>A
  hgvsp: ENSP00000359180.2:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.298G>A
  hgvsp: ENSP00000355106.3:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.250G>A
  hgvsp: ENSP00000354971.3:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.298G>A
  hgvsp: ENSP00000359184.3:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.247G>A
  hgvsp: ENSP00000354635.4:p.Glu83Lys
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu100Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-100327823-AGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327823
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327820
    reference: chr 1
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.309_311delTGG
  hgvsp: ENSP00000355106.3:p.Gly105del
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.258_260delTGG
  hgvsp: ENSP00000354635.4:p.Gly88del
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.261_263delTGG
  hgvsp: ENSP00000354971.3:p.Gly89del
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.309_311delTGG
  hgvsp: ENSP00000359182.3:p.Gly105del
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.309_311delTGG
  hgvsp: ENSP00000294724.4:p.Gly105del
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.309_311delTGG
  hgvsp: ENSP00000359184.3:p.Gly105del
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.261_263delTGG
  hgvsp: ENSP00000359180.2:p.Gly89del
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19151
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly105del
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: AGTG
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-100327829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327829
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327829
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.310G>A
  hgvsp: ENSP00000359182.3:p.Gly104Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.310G>A
  hgvsp: ENSP00000359184.3:p.Gly104Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.259G>A
  hgvsp: ENSP00000354635.4:p.Gly87Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.262G>A
  hgvsp: ENSP00000354971.3:p.Gly88Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.310G>A
  hgvsp: ENSP00000294724.4:p.Gly104Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.262G>A
  hgvsp: ENSP00000359180.2:p.Gly88Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.310G>A
  hgvsp: ENSP00000355106.3:p.Gly104Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly104Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

1-100327830-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327830
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327830
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.311G>T
  hgvsp: ENSP00000355106.3:p.Gly104Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.263G>T
  hgvsp: ENSP00000354971.3:p.Gly88Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.311G>T
  hgvsp: ENSP00000294724.4:p.Gly104Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.311G>T
  hgvsp: ENSP00000359184.3:p.Gly104Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.311G>T
  hgvsp: ENSP00000359182.3:p.Gly104Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.263G>T
  hgvsp: ENSP00000359180.2:p.Gly88Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.260G>T
  hgvsp: ENSP00000354635.4:p.Gly87Val
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19145
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly104Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

1-100327836-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327836
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327836
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.317A>T
  hgvsp: ENSP00000294724.4:p.Tyr106Phe
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.317A>T
  hgvsp: ENSP00000359184.3:p.Tyr106Phe
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.266A>T
  hgvsp: ENSP00000354635.4:p.Tyr89Phe
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.317A>T
  hgvsp: ENSP00000359182.3:p.Tyr106Phe
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.269A>T
  hgvsp: ENSP00000354971.3:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.269A>T
  hgvsp: ENSP00000359180.2:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.317A>T
  hgvsp: ENSP00000355106.3:p.Tyr106Phe
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr106Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-100327844-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327844
    reference: chr 1
allele count: 11
allele frequency: 9.060059961124106e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.325G>T
  hgvsp: ENSP00000359184.3:p.Val109Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.274G>T
  hgvsp: ENSP00000354635.4:p.Val92Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.325G>T
  hgvsp: ENSP00000359182.3:p.Val109Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.325G>T
  hgvsp: ENSP00000294724.4:p.Val109Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.277G>T
  hgvsp: ENSP00000354971.3:p.Val93Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.325G>T
  hgvsp: ENSP00000355106.3:p.Val109Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.277G>T
  hgvsp: ENSP00000359180.2:p.Val93Leu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18790
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val109Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-100327848-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327848
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327848
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.329A>G
  hgvsp: ENSP00000359182.3:p.Asp110Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.281A>G
  hgvsp: ENSP00000359180.2:p.Asp94Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.329A>G
  hgvsp: ENSP00000355106.3:p.Asp110Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.278A>G
  hgvsp: ENSP00000354635.4:p.Asp93Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.329A>G
  hgvsp: ENSP00000294724.4:p.Asp110Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.329A>G
  hgvsp: ENSP00000359184.3:p.Asp110Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.281A>G
  hgvsp: ENSP00000354971.3:p.Asp94Gly
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp110Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-100327853-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327853
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327853
    reference: chr 1
allele count: 75
allele frequency: 6.177313609857345e-4
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.334A>G
  hgvsp: ENSP00000294724.4:p.Ile112Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.334A>G
  hgvsp: ENSP00000359184.3:p.Ile112Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.283A>G
  hgvsp: ENSP00000354635.4:p.Ile95Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.334A>G
  hgvsp: ENSP00000359182.3:p.Ile112Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.286A>G
  hgvsp: ENSP00000354971.3:p.Ile96Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.334A>G
  hgvsp: ENSP00000355106.3:p.Ile112Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.286A>G
  hgvsp: ENSP00000359180.2:p.Ile96Val
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18792
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile112Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-100327859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327859
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327859
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.292C>T
  hgvsp: ENSP00000359180.2:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.340C>T
  hgvsp: ENSP00000359184.3:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.340C>T
  hgvsp: ENSP00000359182.3:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.292C>T
  hgvsp: ENSP00000354971.3:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.340C>T
  hgvsp: ENSP00000294724.4:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.289C>T
  hgvsp: ENSP00000354635.4:p.Arg97Cys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.340C>T
  hgvsp: ENSP00000355106.3:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg114Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

1-100327860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327860
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327860
    reference: chr 1
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.341G>A
  hgvsp: ENSP00000294724.4:p.Arg114His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.293G>A
  hgvsp: ENSP00000359180.2:p.Arg98His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.341G>A
  hgvsp: ENSP00000355106.3:p.Arg114His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.341G>A
  hgvsp: ENSP00000359182.3:p.Arg114His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.341G>A
  hgvsp: ENSP00000359184.3:p.Arg114His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.293G>A
  hgvsp: ENSP00000354971.3:p.Arg98His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.290G>A
  hgvsp: ENSP00000354635.4:p.Arg97His
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19091
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg114His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

1-100327860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327860
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327860
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.341G>C
  hgvsp: ENSP00000355106.3:p.Arg114Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.341G>C
  hgvsp: ENSP00000359184.3:p.Arg114Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.293G>C
  hgvsp: ENSP00000354971.3:p.Arg98Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.341G>C
  hgvsp: ENSP00000294724.4:p.Arg114Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.293G>C
  hgvsp: ENSP00000359180.2:p.Arg98Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.341G>C
  hgvsp: ENSP00000359182.3:p.Arg114Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.290G>C
  hgvsp: ENSP00000354635.4:p.Arg97Pro
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19091
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18810
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg114Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-100327863-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327863
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327863
    reference: chr 1
allele count: 54
allele frequency: 4.447665799097289e-4
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.296T>C
  hgvsp: ENSP00000354971.3:p.Val99Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.344T>C
  hgvsp: ENSP00000355106.3:p.Val115Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.344T>C
  hgvsp: ENSP00000359184.3:p.Val115Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.344T>C
  hgvsp: ENSP00000359182.3:p.Val115Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.344T>C
  hgvsp: ENSP00000294724.4:p.Val115Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.296T>C
  hgvsp: ENSP00000359180.2:p.Val99Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.293T>C
  hgvsp: ENSP00000354635.4:p.Val98Ala
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19086
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val115Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-100327866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327866
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327866
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.299G>A
  hgvsp: ENSP00000359180.2:p.Gly100Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.347G>A
  hgvsp: ENSP00000359182.3:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.299G>A
  hgvsp: ENSP00000354971.3:p.Gly100Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.347G>A
  hgvsp: ENSP00000359184.3:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.296G>A
  hgvsp: ENSP00000354635.4:p.Gly99Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.347G>A
  hgvsp: ENSP00000294724.4:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.347G>A
  hgvsp: ENSP00000355106.3:p.Gly116Asp
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly116Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-100327876-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327876
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327876
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.309T>C
  hgvsp: ENST00000370161.2:c.309T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.309T>C
  hgvsp: ENST00000361302.3:c.309T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.357T>C
  hgvsp: ENST00000361915.3:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.357T>C
  hgvsp: ENST00000370165.3:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.357T>C
  hgvsp: ENST00000294724.4:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.306T>C
  hgvsp: ENST00000361522.4:c.306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.357T>C
  hgvsp: ENST00000370163.3:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn119Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-100327878-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327878
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327878
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.359A>G
  hgvsp: ENSP00000359184.3:p.His120Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.311A>G
  hgvsp: ENSP00000354971.3:p.His104Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.359A>G
  hgvsp: ENSP00000359182.3:p.His120Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.359A>G
  hgvsp: ENSP00000294724.4:p.His120Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.311A>G
  hgvsp: ENSP00000359180.2:p.His104Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.308A>G
  hgvsp: ENSP00000354635.4:p.His103Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.359A>G
  hgvsp: ENSP00000355106.3:p.His120Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19063
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His120Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

1-100327879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327879
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327879
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.360T>C
  hgvsp: ENST00000370163.3:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.360T>C
  hgvsp: ENST00000294724.4:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.312T>C
  hgvsp: ENST00000361302.3:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.309T>C
  hgvsp: ENST00000361522.4:c.309T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.360T>C
  hgvsp: ENST00000361915.3:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.312T>C
  hgvsp: ENST00000370161.2:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.360T>C
  hgvsp: ENST00000370165.3:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His120His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-100327880-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327880
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327880
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.361G>T
  hgvsp: ENSP00000359184.3:p.Val121Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.313G>T
  hgvsp: ENSP00000359180.2:p.Val105Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.310G>T
  hgvsp: ENSP00000354635.4:p.Val104Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.313G>T
  hgvsp: ENSP00000354971.3:p.Val105Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.361G>T
  hgvsp: ENSP00000355106.3:p.Val121Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.361G>T
  hgvsp: ENSP00000294724.4:p.Val121Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.361G>T
  hgvsp: ENSP00000359182.3:p.Val121Leu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7806
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val121Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-100327886-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327886
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327886
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.367C>G
  hgvsp: ENSP00000359182.3:p.Pro123Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.367C>G
  hgvsp: ENSP00000294724.4:p.Pro123Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.367C>G
  hgvsp: ENSP00000359184.3:p.Pro123Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.319C>G
  hgvsp: ENSP00000354971.3:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.367C>G
  hgvsp: ENSP00000355106.3:p.Pro123Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.316C>G
  hgvsp: ENSP00000354635.4:p.Pro106Ala
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.319C>G
  hgvsp: ENSP00000359180.2:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro123Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-100327887-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327887
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327887
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.368C>A
  hgvsp: ENSP00000355106.3:p.Pro123His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.320C>A
  hgvsp: ENSP00000359180.2:p.Pro107His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.368C>A
  hgvsp: ENSP00000359184.3:p.Pro123His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.320C>A
  hgvsp: ENSP00000354971.3:p.Pro107His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.368C>A
  hgvsp: ENSP00000294724.4:p.Pro123His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.368C>A
  hgvsp: ENSP00000359182.3:p.Pro123His
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.317C>A
  hgvsp: ENSP00000354635.4:p.Pro106His
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19059
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro123His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-100327887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327887
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327887
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.320C>T
  hgvsp: ENSP00000354971.3:p.Pro107Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.368C>T
  hgvsp: ENSP00000359182.3:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.368C>T
  hgvsp: ENSP00000294724.4:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.368C>T
  hgvsp: ENSP00000355106.3:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.368C>T
  hgvsp: ENSP00000359184.3:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.317C>T
  hgvsp: ENSP00000354635.4:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.320C>T
  hgvsp: ENSP00000359180.2:p.Pro107Leu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19059
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro123Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-100327892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327892
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327892
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.373G>A
  hgvsp: ENSP00000294724.4:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.325G>A
  hgvsp: ENSP00000359180.2:p.Asp109Asn
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.373G>A
  hgvsp: ENSP00000359182.3:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.373G>A
  hgvsp: ENSP00000359184.3:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.322G>A
  hgvsp: ENSP00000354635.4:p.Asp108Asn
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.325G>A
  hgvsp: ENSP00000354971.3:p.Asp109Asn
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.373G>A
  hgvsp: ENSP00000355106.3:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp125Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-100327896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327896
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327896
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.329G>A
  hgvsp: ENSP00000354971.3:p.Cys110Tyr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.329G>A
  hgvsp: ENSP00000359180.2:p.Cys110Tyr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.377G>A
  hgvsp: ENSP00000359182.3:p.Cys126Tyr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.326G>A
  hgvsp: ENSP00000354635.4:p.Cys109Tyr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.377G>A
  hgvsp: ENSP00000294724.4:p.Cys126Tyr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.377G>A
  hgvsp: ENSP00000355106.3:p.Cys126Tyr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.377G>A
  hgvsp: ENSP00000359184.3:p.Cys126Tyr
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19057
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys126Tyr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-100327904-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327904
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327904
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.385C>G
  hgvsp: ENSP00000355106.3:p.Leu129Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.337C>G
  hgvsp: ENSP00000359180.2:p.Leu113Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.385C>G
  hgvsp: ENSP00000294724.4:p.Leu129Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.385C>G
  hgvsp: ENSP00000359182.3:p.Leu129Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.337C>G
  hgvsp: ENSP00000354971.3:p.Leu113Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.334C>G
  hgvsp: ENSP00000354635.4:p.Leu112Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.385C>G
  hgvsp: ENSP00000359184.3:p.Leu129Val
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu129Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

1-100327912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327912
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327912
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.393A>G
  hgvsp: ENST00000294724.4:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.393A>G
  hgvsp: ENST00000361915.3:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.393A>G
  hgvsp: ENST00000370165.3:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.342A>G
  hgvsp: ENST00000361522.4:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.393A>G
  hgvsp: ENST00000370163.3:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.345A>G
  hgvsp: ENST00000370161.2:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.345A>G
  hgvsp: ENST00000361302.3:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr131Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-100327912-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327912
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327911
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.398delT
  hgvsp: ENSP00000355106.3:p.Leu133Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.398delT
  hgvsp: ENSP00000359182.3:p.Leu133Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.398delT
  hgvsp: ENSP00000294724.4:p.Leu133Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.350delT
  hgvsp: ENSP00000354971.3:p.Leu117Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.347delT
  hgvsp: ENSP00000354635.4:p.Leu116Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.398delT
  hgvsp: ENSP00000359184.3:p.Leu133Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.350delT
  hgvsp: ENSP00000359180.2:p.Leu117Ter
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu133Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: AT
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-100327922-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327922
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327922
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.403A>G
  hgvsp: ENSP00000294724.4:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.355A>G
  hgvsp: ENSP00000354971.3:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.352A>G
  hgvsp: ENSP00000354635.4:p.Lys118Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.403A>G
  hgvsp: ENSP00000355106.3:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.403A>G
  hgvsp: ENSP00000359184.3:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.355A>G
  hgvsp: ENSP00000359180.2:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.403A>G
  hgvsp: ENSP00000359182.3:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys135Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-100327924-GTGTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327924
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327920
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.408_411delTTTG
  hgvsp: ENSP00000359184.3:p.Cys136TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.360_363delTTTG
  hgvsp: ENSP00000354971.3:p.Cys120TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.357_360delTTTG
  hgvsp: ENSP00000354635.4:p.Cys119TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.360_363delTTTG
  hgvsp: ENSP00000359180.2:p.Cys120TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.408_411delTTTG
  hgvsp: ENSP00000294724.4:p.Cys136TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.408_411delTTTG
  hgvsp: ENSP00000359182.3:p.Cys136TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.408_411delTTTG
  hgvsp: ENSP00000355106.3:p.Cys136TrpfsTer21
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19054
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys136TrpfsTer21
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: GTGTT
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-100327930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327930
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327930
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.363G>A
  hgvsp: ENST00000370161.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.411G>A
  hgvsp: ENST00000370165.3:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.363G>A
  hgvsp: ENST00000361302.3:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.411G>A
  hgvsp: ENST00000294724.4:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.411G>A
  hgvsp: ENST00000361915.3:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.411G>A
  hgvsp: ENST00000370163.3:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.360G>A
  hgvsp: ENST00000361522.4:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu137Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

1-100327931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327931
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327931
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.412G>A
  hgvsp: ENSP00000359182.3:p.Gly138Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.364G>A
  hgvsp: ENSP00000354971.3:p.Gly122Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.412G>A
  hgvsp: ENSP00000359184.3:p.Gly138Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.364G>A
  hgvsp: ENSP00000359180.2:p.Gly122Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.361G>A
  hgvsp: ENSP00000354635.4:p.Gly121Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.412G>A
  hgvsp: ENSP00000355106.3:p.Gly138Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.412G>A
  hgvsp: ENSP00000294724.4:p.Gly138Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly138Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

1-100327941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327941
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.422A>G
  hgvsp: ENSP00000359184.3:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.422A>G
  hgvsp: ENSP00000355106.3:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.422A>G
  hgvsp: ENSP00000359182.3:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.374A>G
  hgvsp: ENSP00000359180.2:p.Asp125Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.374A>G
  hgvsp: ENSP00000354971.3:p.Asp125Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.371A>G
  hgvsp: ENSP00000354635.4:p.Asp124Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.422A>G
  hgvsp: ENSP00000294724.4:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7807
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp141Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

1-100327947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327947
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.428G>T
  hgvsp: ENSP00000359182.3:p.Trp143Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.428G>T
  hgvsp: ENSP00000359184.3:p.Trp143Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.428G>T
  hgvsp: ENSP00000355106.3:p.Trp143Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.377G>T
  hgvsp: ENSP00000354635.4:p.Trp126Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.380G>T
  hgvsp: ENSP00000354971.3:p.Trp127Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.380G>T
  hgvsp: ENSP00000359180.2:p.Trp127Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.428G>T
  hgvsp: ENSP00000294724.4:p.Trp143Leu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Trp143Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-100327961-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327961
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327961
    reference: chr 1
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.442A>G
  hgvsp: ENSP00000359184.3:p.Arg148Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.442A>G
  hgvsp: ENSP00000294724.4:p.Arg148Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.394A>G
  hgvsp: ENSP00000354971.3:p.Arg132Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.394A>G
  hgvsp: ENSP00000359180.2:p.Arg132Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.442A>G
  hgvsp: ENSP00000359182.3:p.Arg148Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.391A>G
  hgvsp: ENSP00000354635.4:p.Arg131Gly
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.442A>G
  hgvsp: ENSP00000355106.3:p.Arg148Gly
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg148Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

1-100327962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100327962
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100327962
    reference: chr 1
allele count: 47
allele frequency: 3.871116528843936e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.395G>A
  hgvsp: ENSP00000354971.3:p.Arg132Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.443G>A
  hgvsp: ENSP00000359182.3:p.Arg148Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.395G>A
  hgvsp: ENSP00000359180.2:p.Arg132Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.443G>A
  hgvsp: ENSP00000355106.3:p.Arg148Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.443G>A
  hgvsp: ENSP00000359184.3:p.Arg148Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.443G>A
  hgvsp: ENSP00000294724.4:p.Arg148Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.392G>A
  hgvsp: ENSP00000354635.4:p.Arg131Lys
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg148Lys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13248
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.502776027130038e-5
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 1.95764e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 2.575e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 1.656e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

DP
type: SiteQuality
SIO_000300: 1.958434e6

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.958905e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.004e0

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

FS
type: SiteQuality
SIO_000300: 1.316e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

GenotypeQuality
all individuals: 3001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13254
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.004e0

FS
type: SiteQuality
SIO_000300: 1.316e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

DP
type: SiteQuality
SIO_000300: 1.958905e6

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6456
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.271676300578035e-3
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.448e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.959321e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13265
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.128e0

DP
type: SiteQuality
SIO_000300: 1.959192e6

FS
type: SiteQuality
SIO_000300: 1.4012e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

GenotypeQuality
all individuals: 27870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13267
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6466
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.59e0

FS
type: SiteQuality
SIO_000300: 1.296e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.754e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 1.95946e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.045e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13267
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.59e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.754e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 1.296e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.045e0

DP
type: SiteQuality
SIO_000300: 1.95946e6

GenotypeQuality
all individuals: 13270
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.969708968521085e-4
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.532e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.959191e6

FS
type: SiteQuality
SIO_000300: 6.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

GenotypeQuality
all individuals: 2839
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13271
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999580058791769e-5
allele num: 66676
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.959013e6

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

FS
type: SiteQuality
SIO_000300: 4.091e0

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.346e0

VQSLOD
type: SiteQuality
SIO_000300: -9.255e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 1.958967e6

QD
type: SiteQuality
SIO_000300: 8.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13273
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.142e0

DP
type: SiteQuality
SIO_000300: 1.958453e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.304e0

QD
type: SiteQuality
SIO_000300: 5.71e0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.957409e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e-1

FS
type: SiteQuality
SIO_000300: 3.113e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.050010500105001e-4
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.957776e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.075e0

QD
type: SiteQuality
SIO_000300: 1.27e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 3.317e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6441
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.957101e6

FS
type: SiteQuality
SIO_000300: 5.244e0

MQRankSum
type: SiteQuality
SIO_000300: -1.641e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

VQSLOD
type: SiteQuality
SIO_000300: -2.673e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 7.82e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.179e0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 3001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000300030003e-5
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.957012e6

FS
type: SiteQuality
SIO_000300: 5.892e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1360
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 2.03210729526519e-3
allele num: 9842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.955332e6

FS
type: SiteQuality
SIO_000300: 1.977e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.966e0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13292
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3694
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 1.977e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.955332e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

FS
type: SiteQuality
SIO_000300: 2.257e0

QD
type: SiteQuality
SIO_000300: 1.356e1

DP
type: SiteQuality
SIO_000300: 1.949693e6

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

GenotypeQuality
all individuals: 161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6324
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 2.257e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

DP
type: SiteQuality
SIO_000300: 1.949693e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17635
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2799
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 2.605849e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

QD
type: SiteQuality
SIO_000300: 9.56e0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19161
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3495
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variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.273e0

FS
type: SiteQuality
SIO_000300: 1.024e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

DP
type: SiteQuality
SIO_000300: 2.60508e6

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
all individuals: 3494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19161
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.524e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

FS
type: SiteQuality
SIO_000300: 2.068e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

DP
type: SiteQuality
SIO_000300: 2.605286e6

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.912767644726408e-5
allele num: 10088
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 1.0326e1

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.715e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.607577e6

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 3493
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variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.608873e6

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

QD
type: SiteQuality
SIO_000300: 1.401e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1757
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variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.809691975671964e-5
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.49e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.918e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 2.610275e6

GenotypeQuality
all individuals: 19163
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2804
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 3489
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 7756
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variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.940023520188161e-4
allele num: 10204
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.610622e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.125e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 1.533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 2784
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variant carriers: 0

GenotypeQuality
all individuals: 1758
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.996041741633681e-5
allele num: 66696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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MQRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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MQ
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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DP
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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South Asian
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Latino
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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QD
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Latino
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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African
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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African
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.617234083477592e-5
allele num: 10398
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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MQRankSum
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QD
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DP
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

Other
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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SIO_000300: 5.91e1

MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 5.777675063554426e-4
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

FS
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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East Asian
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Other
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South Asian
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allele frequency: 1.816860465116279e-4
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African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
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South Asian
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Other
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

Other
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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Latino
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allele frequency: 7.77336327517706e-4
allele num: 11578
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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DP
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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allele num: 908
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Latino
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allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 5.450581395348837e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.237e1

MQRankSum
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SIO_000300: 3.37e-1

DP
type: SiteQuality
SIO_000300: 2.623548e6

InbreedingCoeff
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SIO_000300: -7.0e-4

BaseQRankSum
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SIO_000300: -9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
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SIO_000300: -1.202e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQ
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SIO_000300: 5.962e1

DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
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DP
type: SiteQuality
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MQ
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SIO_000300: 5.922e1

BaseQRankSum
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SIO_000300: 1.48e0

InbreedingCoeff
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SIO_000300: 1.0e-4

FS
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SIO_000300: 1.766e0

ClippingRankSum
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SIO_000300: -7.4e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.72e-1

DP
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 54
allele frequency: 3.270348837209302e-3
allele num: 16512
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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European (Non-Finnish)
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Latino
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
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MQRankSum
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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African
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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East Asian
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DP
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BaseQRankSum
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QD
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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DP
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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MQ
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QD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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East Asian
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MQRankSum
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QD
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DP
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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East Asian
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African
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QD
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.372e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.766e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: -2.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.038e0

QD
type: SiteQuality
SIO_000300: 8.09e0

DP
type: SiteQuality
SIO_000300: 2.607234e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.607201e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e1

VQSLOD
type: SiteQuality
SIO_000300: -1.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 2.607357e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

GenotypeQuality
all individuals: 2806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.092e0

DP
type: SiteQuality
SIO_000300: 2.607025e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.543e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: -2.488e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.653e0

FS
type: SiteQuality
SIO_000300: 1.496e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3501
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 2.607049e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.794e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.132e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.41e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.219e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.551e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 2.607064e6