4-87115513-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115513
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115513
    reference: chr 4
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-100G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.42G>C
  hgvsp: ENSP00000378590.2:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.42G>C
  hgvsp: ENSP00000309857.4:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.42G>C
  hgvsp: ENSP00000421762.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.42G>C
  hgvsp: ENSP00000421409.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.163G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.42G>C
  hgvsp: ENSP00000424755.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.42G>C
  hgvsp: ENSP00000355297.2:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-335G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.42G>C
  hgvsp: ENSP00000421359.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.42G>C
  hgvsp: ENSP00000422277.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-100G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25415C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.42G>C
  hgvsp: ENSP00000420987.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.424G>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.42G>C
  hgvsp: ENSP00000352157.3:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu14Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-87115515-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115515
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115515
    reference: chr 4
allele count: 7
allele frequency: 5.767297773823059e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-102T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.40T>C
  hgvsp: ENST00000506773.1:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-102T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.40T>C
  hgvsp: ENST00000503911.1:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.40T>C
  hgvsp: ENST00000511328.1:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-102T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.422T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.40T>C
  hgvsp: ENST00000513186.1:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.40T>C
  hgvsp: ENST00000310816.4:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.40T>C
  hgvsp: ENST00000511167.1:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.40T>C
  hgvsp: ENST00000359221.3:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.40T>C
  hgvsp: ENST00000512017.1:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-337T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.40T>C
  hgvsp: ENST00000361569.2:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-102T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-102T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25413A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.40T>C
  hgvsp: ENST00000395161.2:c.40T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-102T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.161T>C
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu14Leu
num of homozygotes: 1
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

4-87115517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115517
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115517
    reference: chr 4
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.38C>T
  hgvsp: ENSP00000421762.1:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.38C>T
  hgvsp: ENSP00000352157.3:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.38C>T
  hgvsp: ENSP00000422277.1:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-339C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.38C>T
  hgvsp: ENSP00000421359.1:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.38C>T
  hgvsp: ENSP00000355297.2:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-104C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-104C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.38C>T
  hgvsp: ENSP00000309857.4:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.38C>T
  hgvsp: ENSP00000420987.1:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.159C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-104C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-104C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.38C>T
  hgvsp: ENSP00000421409.1:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-104C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-104C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.38C>T
  hgvsp: ENSP00000424755.1:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.420C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.38C>T
  hgvsp: ENSP00000378590.2:p.Thr13Ile
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25411G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr13Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

4-87115520-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115520
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115520
    reference: chr 4
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.35C>A
  hgvsp: ENSP00000421409.1:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.35C>A
  hgvsp: ENSP00000424755.1:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25408G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.35C>A
  hgvsp: ENSP00000421762.1:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-107C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-107C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.35C>A
  hgvsp: ENSP00000421359.1:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-107C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.35C>A
  hgvsp: ENSP00000355297.2:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.35C>A
  hgvsp: ENSP00000378590.2:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.35C>A
  hgvsp: ENSP00000352157.3:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.35C>A
  hgvsp: ENSP00000420987.1:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-107C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.35C>A
  hgvsp: ENSP00000422277.1:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-342C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.35C>A
  hgvsp: ENSP00000309857.4:p.Pro12Gln
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.156C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-107C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-107C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.417C>A
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro12Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum

4-87115534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115534
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115534
    reference: chr 4
allele count: 3
allele frequency: 2.472473132458627e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.21C>A
  hgvsp: ENSP00000421762.1:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-121C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.21C>A
  hgvsp: ENSP00000424755.1:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-121C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.21C>A
  hgvsp: ENSP00000309857.4:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.21C>A
  hgvsp: ENSP00000355297.2:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.21C>A
  hgvsp: ENSP00000422277.1:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.21C>A
  hgvsp: ENSP00000352157.3:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.21C>A
  hgvsp: ENSP00000420987.1:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.21C>A
  hgvsp: ENSP00000421359.1:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.21C>A
  hgvsp: ENSP00000421409.1:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-121C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.21C>A
  hgvsp: ENSP00000378590.2:p.Tyr7Ter
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-356C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.403C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25394G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.142C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-121C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-121C>A
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-121C>A
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Tyr7Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

4-87115536-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115536
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115536
    reference: chr 4
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-123T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.19T>C
  hgvsp: ENSP00000352157.3:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.19T>C
  hgvsp: ENSP00000421409.1:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.19T>C
  hgvsp: ENSP00000422277.1:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-123T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-123T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.19T>C
  hgvsp: ENSP00000420987.1:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.19T>C
  hgvsp: ENSP00000421359.1:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-123T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.19T>C
  hgvsp: ENSP00000309857.4:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-123T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.19T>C
  hgvsp: ENSP00000378590.2:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.140T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.19T>C
  hgvsp: ENSP00000424755.1:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.19T>C
  hgvsp: ENSP00000355297.2:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.19T>C
  hgvsp: ENSP00000421762.1:p.Tyr7His
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-123T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25392A>G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-358T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.401T>C
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Tyr7His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

4-87115543-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115543
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115543
    reference: chr 4
allele count: 4
allele frequency: 3.297989875171083e-5
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-130T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.12T>C
  hgvsp: ENST00000310816.4:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25385A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.12T>C
  hgvsp: ENST00000511167.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.12T>C
  hgvsp: ENST00000506773.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.12T>C
  hgvsp: ENST00000513186.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-130T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.12T>C
  hgvsp: ENST00000512017.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.394T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.12T>C
  hgvsp: ENST00000359221.3:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-130T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.12T>C
  hgvsp: ENST00000361569.2:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-365T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.12T>C
  hgvsp: ENST00000395161.2:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.12T>C
  hgvsp: ENST00000503911.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.12T>C
  hgvsp: ENST00000511328.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-130T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.133T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-130T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-130T>C
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.His4His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

4-87115544-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115544
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115544
    reference: chr 4
allele count: 3
allele frequency: 2.473492406378312e-5
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.11A>G
  hgvsp: ENSP00000420987.1:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.11A>G
  hgvsp: ENSP00000378590.2:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.11A>G
  hgvsp: ENSP00000421359.1:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.11A>G
  hgvsp: ENSP00000421409.1:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.11A>G
  hgvsp: ENSP00000352157.3:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.11A>G
  hgvsp: ENSP00000309857.4:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-131A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.132A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-366A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.11A>G
  hgvsp: ENSP00000424755.1:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.11A>G
  hgvsp: ENSP00000422277.1:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.11A>G
  hgvsp: ENSP00000355297.2:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25384T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.11A>G
  hgvsp: ENSP00000421762.1:p.His4Arg
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.393A>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.His4Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

4-87115546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115546
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115546
    reference: chr 4
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-133C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.9C>T
  hgvsp: ENST00000359221.3:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-133C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.9C>T
  hgvsp: ENST00000361569.2:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.9C>T
  hgvsp: ENST00000513186.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-133C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.9C>T
  hgvsp: ENST00000395161.2:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.9C>T
  hgvsp: ENST00000310816.4:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.9C>T
  hgvsp: ENST00000511328.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.9C>T
  hgvsp: ENST00000512017.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-133C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.9C>T
  hgvsp: ENST00000511167.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.130C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.9C>T
  hgvsp: ENST00000503911.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-368C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-133C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25382G>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-133C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.9C>T
  hgvsp: ENST00000506773.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.391C>T
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu3Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

4-87115564-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115564
    reference: chr 4
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-147-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-147-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.116-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.377-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-147-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-147-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-147-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25364G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-147-4C>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.-6-4C>G
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-6-4C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

4-87115580-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115580
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115580
    reference: chr 4
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.116-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-147-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-147-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-382-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-147-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.377-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25348A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-147-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-147-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-147-20T>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.-6-20T>C
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-87115582-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115582
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115582
    reference: chr 4
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-382-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-147-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-147-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-147-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.116-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-147-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.377-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-147-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-147-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.-6-22G>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25346C>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-87115587-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115587
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115587
    reference: chr 4
allele count: 2
allele frequency: 1.657632569164719e-5
allele num: 120654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-147-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-147-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25341A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-147-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.116-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-147-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-382-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.377-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-147-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.-6-27T>G
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-147-27T>G
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

4-87115596-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87115596
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87115596
    reference: chr 4
allele count: 10
allele frequency: 8.312966565248475e-5
allele num: 120294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000414469
  ensembl transcript: ENST00000449047
  gene symbol: MAPK10
  hgvsc: ENST00000449047.2:c.-382-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000309857
  ensembl transcript: ENST00000310816
  gene symbol: MAPK10
  hgvsc: ENST00000310816.4:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422985
  ensembl transcript: ENST00000512564
  gene symbol: MAPK10
  hgvsc: ENST00000512564.1:c.-147-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000505356
  gene symbol: MAPK10
  hgvsc: ENST00000505356.1:n.116-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378590
  ensembl transcript: ENST00000395161
  gene symbol: MAPK10
  hgvsc: ENST00000395161.2:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421359
  ensembl transcript: ENST00000506773
  gene symbol: MAPK10
  hgvsc: ENST00000506773.1:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000355297
  ensembl transcript: ENST00000361569
  gene symbol: MAPK10
  hgvsc: ENST00000361569.2:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.377-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000422277
  ensembl transcript: ENST00000511167
  gene symbol: MAPK10
  hgvsc: ENST00000511167.1:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000425654
  ensembl transcript: ENST00000512689
  gene symbol: MAPK10
  hgvsc: ENST00000512689.1:c.-147-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250062
  ensembl transcript: ENST00000511917
  gene symbol: RP11-778J15.1
  hgvsc: ENST00000511917.1:n.898-25332T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000352157
  ensembl transcript: ENST00000359221
  gene symbol: MAPK10
  hgvsc: ENST00000359221.3:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424755
  ensembl transcript: ENST00000512017
  gene symbol: MAPK10
  hgvsc: ENST00000512017.1:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378598
  ensembl transcript: ENST00000395169
  gene symbol: MAPK10
  hgvsc: ENST00000395169.3:c.-147-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-147-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000424128
  ensembl transcript: ENST00000509464
  gene symbol: MAPK10
  hgvsc: ENST00000509464.1:c.-147-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421409
  ensembl transcript: ENST00000503911
  gene symbol: MAPK10
  hgvsc: ENST00000503911.1:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000378595
  ensembl transcript: ENST00000395166
  gene symbol: MAPK10
  hgvsc: ENST00000395166.1:c.-147-36A>C
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000421762
  ensembl transcript: ENST00000511328
  gene symbol: MAPK10
  hgvsc: ENST00000511328.1:c.-6-36A>C
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

4-87463700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87463700
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87463700
    reference: chr 4
allele count: 1
allele frequency: 5.0e-1
allele num: 2
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000420987
  ensembl transcript: ENST00000513186
  gene symbol: MAPK10
  hgvsc: ENST00000513186.1:c.-122+51363C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl protein: ENSP00000423918
  ensembl transcript: ENST00000502302
  gene symbol: MAPK10
  hgvsc: ENST00000502302.1:c.-263+51363C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000512046
  gene symbol: MAPK10
  hgvsc: ENST00000512046.1:n.387+51186C>T
  variant of: http://identifiers.org/hgnc/6872
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266515
  ensembl transcript: ENST00000583004
  gene symbol: MIR4452
  hgvsc: ENST00000583004.1:n.6C>T
  variant of: http://identifiers.org/hgnc/41539
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109339
  ensembl transcript: ENST00000513839
  gene symbol: MAPK10
  hgvsc: ENST00000513839.1:n.201+51363C>T
  variant of: http://identifiers.org/hgnc/6872
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

4-87556369-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556369
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556369
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 31020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.-5-36C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.-5-36C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.-5-36C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.-5-36C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.-5-36C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.-5-36C>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23223
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

4-87556377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556377
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556377
    reference: chr 4
allele count: 1
allele frequency: 3.129498654315578e-5
allele num: 31954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.-5-28T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.-5-28T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.-5-28T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.-5-28T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.-5-28T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.-5-28T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14679
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

4-87556389-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556389
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556390
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 34358
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.-5-15dupA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.-5-15dupA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.-5-15dupA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.-5-15dupA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.-5-15dupA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.-5-15dupA
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30952
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27878
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-87556408-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556408
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556408
    reference: chr 4
allele count: 25
allele frequency: 5.687764481048369e-4
allele num: 43954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33439
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4441
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-87556415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556415
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556415
    reference: chr 4
allele count: 18
allele frequency: 3.692307692307692e-4
allele num: 48750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.6C>T
  hgvsp: ENST00000411767.2:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.6C>T
  hgvsp: ENST00000502971.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.6C>T
  hgvsp: ENST00000427191.2:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.6C>T
  hgvsp: ENST00000511467.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.6C>T
  hgvsp: ENST00000436978.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.6C>T
  hgvsp: ENST00000316707.6:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.6C>T
  hgvsp: ENST00000507902.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 32207
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32024
  bin: 2.25e1
  variant carriers: 1
hgvs: p.His2His
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

4-87556416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556416
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556416
    reference: chr 4
allele count: 21
allele frequency: 4.203867558153501e-4
allele num: 49954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.7G>A
  hgvsp: ENSP00000407249.2:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.7G>A
  hgvsp: ENSP00000422835.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.7G>A
  hgvsp: ENSP00000394794.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.7G>A
  hgvsp: ENSP00000426626.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.7G>A
  hgvsp: ENSP00000423531.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.7G>A
  hgvsp: ENSP00000322675.6:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.7G>A
  hgvsp: ENSP00000408368.2:p.Val3Met
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31885
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val3Met
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

4-87556426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556426
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556426
    reference: chr 4
allele count: 1
allele frequency: 1.746358841814816e-5
allele num: 57262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.17C>T
  hgvsp: ENSP00000426626.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.17C>T
  hgvsp: ENSP00000422835.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.17C>T
  hgvsp: ENSP00000394794.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.17C>T
  hgvsp: ENSP00000322675.6:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.17C>T
  hgvsp: ENSP00000407249.2:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.17C>T
  hgvsp: ENSP00000423531.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.17C>T
  hgvsp: ENSP00000408368.2:p.Ala6Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala6Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

4-87556430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556430
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556430
    reference: chr 4
allele count: 283
allele frequency: 4.691489008985113e-3
allele num: 60322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.21G>A
  hgvsp: ENST00000511467.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.21G>A
  hgvsp: ENST00000507902.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.21G>A
  hgvsp: ENST00000502971.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.21G>A
  hgvsp: ENST00000411767.2:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.21G>A
  hgvsp: ENST00000316707.6:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.21G>A
  hgvsp: ENST00000427191.2:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.21G>A
  hgvsp: ENST00000436978.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14820
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 1.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 28111
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28664
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16726
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.75e1
  variant carriers: 3
hgvs: p.Glu7Glu
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

4-87556443-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556443
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556443
    reference: chr 4
allele count: 4
allele frequency: 6.044122091266244e-5
allele num: 66180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.34C>T
  hgvsp: ENSP00000322675.6:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.34C>T
  hgvsp: ENSP00000426626.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.34C>T
  hgvsp: ENSP00000394794.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.34C>T
  hgvsp: ENSP00000407249.2:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.34C>T
  hgvsp: ENSP00000423531.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.34C>T
  hgvsp: ENSP00000422835.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.34C>T
  hgvsp: ENSP00000408368.2:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg12Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

4-87556444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556444
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556444
    reference: chr 4
allele count: 2
allele frequency: 2.986768615035393e-5
allele num: 66962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.35G>A
  hgvsp: ENSP00000426626.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.35G>A
  hgvsp: ENSP00000394794.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.35G>A
  hgvsp: ENSP00000423531.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.35G>A
  hgvsp: ENSP00000322675.6:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.35G>A
  hgvsp: ENSP00000422835.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.35G>A
  hgvsp: ENSP00000407249.2:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.35G>A
  hgvsp: ENSP00000408368.2:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg12Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

4-87556448-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556448
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556448
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 68380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.39T>C
  hgvsp: ENST00000316707.6:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.39T>C
  hgvsp: ENST00000502971.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.39T>C
  hgvsp: ENST00000427191.2:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.39T>C
  hgvsp: ENST00000411767.2:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.39T>C
  hgvsp: ENST00000511467.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.39T>C
  hgvsp: ENST00000507902.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.39T>C
  hgvsp: ENST00000436978.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24618
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly13Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

4-87556449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556449
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556449
    reference: chr 4
allele count: 3
allele frequency: 4.359324595309367e-5
allele num: 68818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.40G>A
  hgvsp: ENSP00000408368.2:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.40G>A
  hgvsp: ENSP00000422835.1:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.40G>A
  hgvsp: ENSP00000394794.1:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.40G>A
  hgvsp: ENSP00000322675.6:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.40G>A
  hgvsp: ENSP00000426626.1:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.40G>A
  hgvsp: ENSP00000423531.1:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.40G>A
  hgvsp: ENSP00000407249.2:p.Gly14Arg
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17684
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly14Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

4-87556461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556461
    reference: chr 4
allele count: 4
allele frequency: 5.613719931512617e-5
allele num: 71254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.52G>A
  hgvsp: ENSP00000426626.1:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.52G>A
  hgvsp: ENSP00000422835.1:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.52G>A
  hgvsp: ENSP00000407249.2:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.52G>A
  hgvsp: ENSP00000408368.2:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.52G>A
  hgvsp: ENSP00000322675.6:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.52G>A
  hgvsp: ENSP00000394794.1:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.52G>A
  hgvsp: ENSP00000423531.1:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18174
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu18Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

4-87556470-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556470
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556470
    reference: chr 4
allele count: 1
allele frequency: 1.419365827348341e-5
allele num: 70454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.61A>G
  hgvsp: ENSP00000408368.2:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.61A>G
  hgvsp: ENSP00000423531.1:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.61A>G
  hgvsp: ENSP00000422835.1:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.61A>G
  hgvsp: ENSP00000394794.1:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.61A>G
  hgvsp: ENSP00000426626.1:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.61A>G
  hgvsp: ENSP00000322675.6:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.61A>G
  hgvsp: ENSP00000407249.2:p.Ile21Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile21Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-87556472-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556472
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556472
    reference: chr 4
allele count: 1
allele frequency: 1.433239695006593e-5
allele num: 69772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.63A>G
  hgvsp: ENSP00000322675.6:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.63A>G
  hgvsp: ENSP00000426626.1:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.63A>G
  hgvsp: ENSP00000408368.2:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.63A>G
  hgvsp: ENSP00000422835.1:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.63A>G
  hgvsp: ENSP00000407249.2:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.63A>G
  hgvsp: ENSP00000394794.1:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.63A>G
  hgvsp: ENSP00000423531.1:p.Ile21Met
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile21Met
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

4-87556474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556474
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556474
    reference: chr 4
allele count: 2
allele frequency: 2.873398080570082e-5
allele num: 69604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.65G>A
  hgvsp: ENSP00000407249.2:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.65G>A
  hgvsp: ENSP00000322675.6:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.65G>A
  hgvsp: ENSP00000426626.1:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.65G>A
  hgvsp: ENSP00000408368.2:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.65G>A
  hgvsp: ENSP00000422835.1:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.65G>A
  hgvsp: ENSP00000394794.1:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.65G>A
  hgvsp: ENSP00000423531.1:p.Trp22Ter
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15253
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp22Ter
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

4-87556480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556480
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556480
    reference: chr 4
allele count: 1
allele frequency: 1.468903316783689e-5
allele num: 68078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.71T>C
  hgvsp: ENSP00000422835.1:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.71T>C
  hgvsp: ENSP00000426626.1:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.71T>C
  hgvsp: ENSP00000407249.2:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.71T>C
  hgvsp: ENSP00000394794.1:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.71T>C
  hgvsp: ENSP00000322675.6:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.71T>C
  hgvsp: ENSP00000408368.2:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.71T>C
  hgvsp: ENSP00000423531.1:p.Val24Ala
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30051
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val24Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

4-87556505-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556505
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556505
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 60654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.96C>G
  hgvsp: ENST00000502971.1:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.96C>G
  hgvsp: ENST00000511467.1:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.96C>G
  hgvsp: ENST00000507902.1:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.96C>G
  hgvsp: ENST00000436978.1:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.96C>G
  hgvsp: ENST00000411767.2:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.96C>G
  hgvsp: ENST00000316707.6:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.96C>G
  hgvsp: ENST00000427191.2:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25083
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu32Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-87556522-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556522
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556522
    reference: chr 4
allele count: 6
allele frequency: 1.126041588469334e-4
allele num: 53284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.113A>C
  hgvsp: ENSP00000426626.1:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.113A>C
  hgvsp: ENSP00000407249.2:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.113A>C
  hgvsp: ENSP00000322675.6:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.113A>C
  hgvsp: ENSP00000423531.1:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.113A>C
  hgvsp: ENSP00000422835.1:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.113A>C
  hgvsp: ENSP00000394794.1:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.113A>C
  hgvsp: ENSP00000408368.2:p.Lys38Thr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23554
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys38Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-87556528-A-AGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556528
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556531
    reference: chr 4
allele count: 5
allele frequency: 1.020241593209272e-4
allele num: 49008
alternate allele: AGCT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+21_115+23dupCTG
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22408
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26003
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13644
  bin: 7.5e0
  variant carriers: 2
hgvs: c.115+21_115+23dupCTG
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

4-87556528-AGCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556528
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556525
    reference: chr 4
allele count: 6
allele frequency: 1.224289911851126e-4
allele num: 49008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+21_115+23delCTG
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22408
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26003
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 1
hgvs: c.115+21_115+23delCTG
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: AGCT
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-87556539-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556539
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556539
    reference: chr 4
allele count: 1
allele frequency: 2.573075339645945e-5
allele num: 38864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+15C>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

4-87556539-CTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556539
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556530
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 38864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22511
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: CTGCTGCTGT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

4-87556544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556544
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556544
    reference: chr 4
allele count: 1
allele frequency: 2.74830978947947e-5
allele num: 36386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+20G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20050
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-87556545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556545
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556545
    reference: chr 4
allele count: 4
allele frequency: 1.22752102129749e-4
allele num: 32586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+21C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21322
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20048
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-87556545-CTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556545
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556542
    reference: chr 4
allele count: 14
allele frequency: 4.296323574541214e-4
allele num: 32586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+35_115+37delGTT
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21322
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19474
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17971
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20048
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: CTGT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

4-87556545-C-CTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556545
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556548
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 32586
alternate allele: CTGT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+35_115+37dupGTT
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 19474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20048
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

4-87556548-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556548
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556548
    reference: chr 4
allele count: 49
allele frequency: 1.597131681877445e-3
allele num: 30680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+24T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 22015
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14389
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22320
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

4-87556555-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556555
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556555
    reference: chr 4
allele count: 1
allele frequency: 3.293807641633728e-5
allele num: 30360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+31T>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4759
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

4-87556557-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556557
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556557
    reference: chr 4
allele count: 17
allele frequency: 5.74052812858783e-4
allele num: 29614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+33T>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19911
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 23576
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 23842
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5134
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

4-87556564-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556564
    reference: chr 4
allele count: 1
allele frequency: 3.701236212895107e-5
allele num: 27018
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+40A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20098
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6553
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

4-87556572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87556572
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87556572
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 25690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.115+48G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20279
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

4-87582294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87582294
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87582294
    reference: chr 4
allele count: 2
allele frequency: 2.104820037886761e-4
allele num: 9502
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-11224C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

4-87582314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87582314
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87582314
    reference: chr 4
allele count: 1
allele frequency: 1.280409731113956e-4
allele num: 7810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-11204C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

4-87582328-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87582328
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87582328
    reference: chr 4
allele count: 1
allele frequency: 1.408847562693716e-4
allele num: 7098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-11190G>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-87582365-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87582365
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87582365
    reference: chr 4
allele count: 2
allele frequency: 5.00751126690035e-4
allele num: 3994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-11153T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-87593475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593475
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593475
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 18718
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-43C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 31
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genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 9863
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 550
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

4-87593478-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593479
    reference: chr 4
allele count: 23
allele frequency: 1.431951189142074e-3
allele num: 16062
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-31dupT
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 72
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

4-87593478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593478
    reference: chr 4
allele count: 5
allele frequency: 3.112937367700162e-4
allele num: 16062
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 520
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 336
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7110
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 178
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-87593478-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593477
    reference: chr 4
allele count: 21
allele frequency: 1.307433694434068e-3
allele num: 16062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-31delT
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18911
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10812
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9415
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: CT
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

4-87593488-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593488
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593488
    reference: chr 4
allele count: 36
allele frequency: 1.869158878504673e-3
allele num: 19260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-30A>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14778
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

4-87593495-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593495
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593495
    reference: chr 4
allele count: 29
allele frequency: 1.426182748106619e-3
allele num: 20334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.116-23A>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3999
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/4-87593532-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593532
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593532
    reference: chr 4
allele count: 1
allele frequency: 4.339147791373774e-5
allele num: 23046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.130C>A
  hgvsp: ENSP00000426626.1:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.130C>A
  hgvsp: ENSP00000322675.6:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.130C>A
  hgvsp: ENSP00000407249.2:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.130C>A
  hgvsp: ENSP00000423531.1:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.130C>A
  hgvsp: ENSP00000408368.2:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.130C>A
  hgvsp: ENSP00000422835.1:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.130C>A
  hgvsp: ENSP00000394794.1:p.Pro44Thr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro44Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ

4-87593536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593536
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593536
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 23198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.134C>T
  hgvsp: ENSP00000322675.6:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.134C>T
  hgvsp: ENSP00000407249.2:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.134C>T
  hgvsp: ENSP00000423531.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.134C>T
  hgvsp: ENSP00000394794.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.134C>T
  hgvsp: ENSP00000426626.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.134C>T
  hgvsp: ENSP00000408368.2:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.134C>T
  hgvsp: ENSP00000422835.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala45Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

4-87593537-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593537
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593537
    reference: chr 4
allele count: 2
allele frequency: 8.595495960116899e-5
allele num: 23268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.135T>C
  hgvsp: ENST00000316707.6:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.135T>C
  hgvsp: ENST00000507902.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.135T>C
  hgvsp: ENST00000411767.2:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.135T>C
  hgvsp: ENST00000502971.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.135T>C
  hgvsp: ENST00000427191.2:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.135T>C
  hgvsp: ENST00000511467.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.135T>C
  hgvsp: ENST00000436978.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33054
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala45Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

4-87593550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593550
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593550
    reference: chr 4
allele count: 7
allele frequency: 2.926176741075161e-4
allele num: 23922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.148A>G
  hgvsp: ENSP00000322675.6:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.148A>G
  hgvsp: ENSP00000423531.1:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.148A>G
  hgvsp: ENSP00000407249.2:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.148A>G
  hgvsp: ENSP00000394794.1:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.148A>G
  hgvsp: ENSP00000408368.2:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.148A>G
  hgvsp: ENSP00000426626.1:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.148A>G
  hgvsp: ENSP00000422835.1:p.Ile50Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15737
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13428
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile50Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

4-87593559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593559
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593559
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 24386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.157C>T
  hgvsp: ENSP00000423531.1:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.157C>T
  hgvsp: ENSP00000407249.2:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.157C>T
  hgvsp: ENSP00000422835.1:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.157C>T
  hgvsp: ENSP00000394794.1:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.157C>T
  hgvsp: ENSP00000322675.6:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.157C>T
  hgvsp: ENSP00000426626.1:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.157C>T
  hgvsp: ENSP00000408368.2:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18265
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro53Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

4-87593561-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593561
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593561
    reference: chr 4
allele count: 9
allele frequency: 3.657941798081613e-4
allele num: 24604
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.159A>G
  hgvsp: ENST00000436978.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.159A>G
  hgvsp: ENST00000316707.6:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.159A>G
  hgvsp: ENST00000511467.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.159A>G
  hgvsp: ENST00000411767.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.159A>G
  hgvsp: ENST00000507902.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.159A>G
  hgvsp: ENST00000427191.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.159A>G
  hgvsp: ENST00000502971.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18897
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro53Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-87593597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593597
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593597
    reference: chr 4
allele count: 3
allele frequency: 9.449414136323548e-5
allele num: 31748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.195A>G
  hgvsp: ENST00000502971.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.195A>G
  hgvsp: ENST00000511467.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.195A>G
  hgvsp: ENST00000436978.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.195A>G
  hgvsp: ENST00000316707.6:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.195A>G
  hgvsp: ENST00000411767.2:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.195A>G
  hgvsp: ENST00000427191.2:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.195A>G
  hgvsp: ENST00000507902.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32179
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11585
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser65Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-87593607-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593607
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593607
    reference: chr 4
allele count: 1
allele frequency: 2.805836139169473e-5
allele num: 35640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.205G>T
  hgvsp: ENSP00000322675.6:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.205G>T
  hgvsp: ENSP00000423531.1:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.205G>T
  hgvsp: ENSP00000394794.1:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.205G>T
  hgvsp: ENSP00000422835.1:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.205G>T
  hgvsp: ENSP00000407249.2:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.205G>T
  hgvsp: ENSP00000426626.1:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.205G>T
  hgvsp: ENSP00000408368.2:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu69Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

4-87593620-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593620
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593620
    reference: chr 4
allele count: 13
allele frequency: 2.9120559114735e-4
allele num: 44642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.218A>G
  hgvsp: ENSP00000407249.2:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.218A>G
  hgvsp: ENSP00000423531.1:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.218A>G
  hgvsp: ENSP00000408368.2:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.218A>G
  hgvsp: ENSP00000426626.1:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.218A>G
  hgvsp: ENSP00000394794.1:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.218A>G
  hgvsp: ENSP00000322675.6:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.218A>G
  hgvsp: ENSP00000422835.1:p.Asn73Ser
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33927
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn73Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

4-87593622-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593622
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593622
    reference: chr 4
allele count: 1
allele frequency: 2.14583065104502e-5
allele num: 46602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.220C>G
  hgvsp: ENSP00000423531.1:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.220C>G
  hgvsp: ENSP00000394794.1:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.220C>G
  hgvsp: ENSP00000426626.1:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.220C>G
  hgvsp: ENSP00000322675.6:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.220C>G
  hgvsp: ENSP00000408368.2:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.220C>G
  hgvsp: ENSP00000407249.2:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.220C>G
  hgvsp: ENSP00000422835.1:p.Gln74Glu
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln74Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

4-87593631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593631
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593631
    reference: chr 4
allele count: 1
allele frequency: 1.799402598337352e-5
allele num: 55574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.229C>T
  hgvsp: ENSP00000423531.1:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.229C>T
  hgvsp: ENSP00000407249.2:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.229C>T
  hgvsp: ENSP00000408368.2:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.229C>T
  hgvsp: ENSP00000422835.1:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.229C>T
  hgvsp: ENSP00000426626.1:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.229C>T
  hgvsp: ENSP00000394794.1:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.229C>T
  hgvsp: ENSP00000322675.6:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18416
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg77Ter
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

4-87593644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87593644
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87593644
    reference: chr 4
allele count: 7
allele frequency: 1.088782430162384e-4
allele num: 64292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.242C>T
  hgvsp: ENSP00000408368.2:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.242C>T
  hgvsp: ENSP00000394794.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000422835
  ensembl transcript: ENST00000507902
  gene symbol: PTPN13
  hgvsc: ENST00000507902.1:c.242C>T
  hgvsp: ENSP00000422835.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.242C>T
  hgvsp: ENSP00000322675.6:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.242C>T
  hgvsp: ENSP00000407249.2:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.242C>T
  hgvsp: ENSP00000426626.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000423531
  ensembl transcript: ENST00000502971
  gene symbol: PTPN13
  hgvsc: ENST00000502971.1:c.242C>T
  hgvsp: ENSP00000423531.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26531
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Ala81Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

GenotypeDepth
all individuals: 2530
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6016
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6766
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2957
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3059
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6310
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6288
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6744
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5584
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3557
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 985
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33924
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.115e1

FS
type: SiteQuality
SIO_000300: 2.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.281e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 3.092001e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

GenotypeDepth
all individuals: 5584
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6766
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6288
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2529
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1906
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6016
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6310
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3060
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2957
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 3558
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6744
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 985
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33925
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.092485549132948e-4
allele num: 8650
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

QD
type: SiteQuality
SIO_000300: 1.254e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.528e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.092469e6

GenotypeDepth
all individuals: 6310
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6766
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2953
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 985
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3059
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6745
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3557
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1906
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5585
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6017
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2529
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6289
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33922
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.896e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 1.775e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.526e0

DP
type: SiteQuality
SIO_000300: 3.091501e6

QD
type: SiteQuality
SIO_000300: 1.318e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeDepth
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6766
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6289
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2951
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 985
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6312
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6744
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6018
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33922
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9831
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.401e0

QD
type: SiteQuality
SIO_000300: 1.103e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.551e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 2.414e0

DP
type: SiteQuality
SIO_000300: 3.091345e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeDepth
all individuals: 3558
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6766
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6311
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2529
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 985
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2950
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 6018
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6277
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6744
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33922
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.090944e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.686e0

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5576
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3034
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6765
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6277
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6309
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1410
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6018
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 984
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6744
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3559
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4742
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2531
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2950
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33922
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3669
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498695378340282e-5
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 3.090657e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.533e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.14e-2

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6019
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 984
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2530
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3558
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6306
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6743
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3011
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2949
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5545
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33920
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3450
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

FS
type: SiteQuality
SIO_000300: 2.874e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.419999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

DP
type: SiteQuality
SIO_000300: 3.089571e6

QD
type: SiteQuality
SIO_000300: 1.456e1

GenotypeDepth
all individuals: 4742
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2530
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6267
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6769
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6743
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5544
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3012
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6306
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3559
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2945
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 6019
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 984
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33921
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9758
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.316423442205235e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.371e0

FS
type: SiteQuality
SIO_000300: 6.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 3.089284e6

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeDepth
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6262
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2530
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 984
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 693
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6021
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5544
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6743
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6769
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6305
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2943
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3011
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4741
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9761
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.029e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.359e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.806e0

DP
type: SiteQuality
SIO_000300: 3.088813e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 4.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000109339
ensembl protein: ENSP00000414469
ensembl transcript: ENST00000449047
gene symbol: MAPK10
hgvsc: ENST00000449047.2:c.-382-4C>G
variant of: http://identifiers.org/hgnc/6872

GenotypeDepth
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VQSLOD
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DP
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GenotypeQuality
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African
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DP
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East Asian
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VQSLOD
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East Asian
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African
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GenotypeQuality
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East Asian
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African
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allele frequency: 5.0e-1
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European (Finnish)
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allele frequency: NaN
allele num: 0
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South Asian
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Latino
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Other
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allele frequency: NaN
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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African
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Latino
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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Other
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East Asian
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allele frequency: 7.656967840735069e-4
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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DP
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QD
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FS
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
allele num: 8842
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2888
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African
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allele frequency: 5.679236710586098e-3
allele num: 4402
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.35823e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.349e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

East Asian
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allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 2.088554720133667e-4
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European (Non-Finnish)
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allele frequency: 5.778120184899846e-4
allele num: 25960
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Other
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South Asian
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European (Finnish)
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allele frequency: 6.389776357827476e-4
allele num: 3130
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QD
type: SiteQuality
SIO_000300: 1.148e1

DP
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BaseQRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 3.372049456725366e-4
allele num: 26690
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East Asian
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allele frequency: 3.828972559029994e-3
allele num: 3134
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 31124
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African
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European (Finnish)
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East Asian
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Latino
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Other
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South Asian
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 3.777657852131678e-3
allele num: 3706
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele frequency: 6.773920406435224e-3
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African
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Other
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South Asian
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allele num: 9818
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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MQRankSum
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 5918
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European (Finnish)
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East Asian
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Other
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Latino
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South Asian
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allele frequency: 1.960015680125441e-4
allele num: 10204
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European (Non-Finnish)
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allele frequency: 2.733136547501913e-5
allele num: 36588
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.950078003120125e-4
allele num: 10256
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 1.021892e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

FS
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4882
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 1.029137e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.65016501650165e-4
allele num: 6060
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4928
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.249895002099958e-5
allele num: 38096
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.031921e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.195e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 2.473e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.871e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39576
num of homozygotes: 0

African
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allele count: 4
allele frequency: 6.445375443119562e-4
allele num: 6206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

FS
type: SiteQuality
SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 1.045967e6

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.629195177582274e-4
allele num: 6138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39114
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.083e0

VQSLOD
type: SiteQuality
SIO_000300: -4.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.026154e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 1.698e1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.584513594541507e-5
allele num: 38692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

FS
type: SiteQuality
SIO_000300: 7.259e0

QD
type: SiteQuality
SIO_000300: 9.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.015627e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.012882447665056e-4
allele num: 4968
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.591210613598673e-5
allele num: 38592
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQ
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DP
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SIO_000300: 1.013568e6

BaseQRankSum
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SIO_000300: -2.488e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4040
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10362
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.656748140276302e-5
allele num: 37640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.84228e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9948
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33114
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Other
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

DP
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.476668635558181e-3
allele num: 3386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4664
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.11864406779661e-3
allele num: 472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28660
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.238e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.87228e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 6.337e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1835
bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.82262996941896e-5
allele num: 26160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.081782778018174e-4
allele num: 9244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.029512697323267e-3
allele num: 2914
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.24e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 7.55332e5

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

FS
type: SiteQuality
SIO_000300: 7.433e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2521
bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.146788990825688e-4
allele num: 26160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2786
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.300966405890474e-4
allele num: 4346
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.081782778018174e-4
allele num: 9244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.431708991077557e-4
allele num: 2914
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.55332e5

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 7.433e0

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 5.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4753
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GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.006508460999299e-5
allele num: 19974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 6.91407e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.87e-2

QD
type: SiteQuality
SIO_000300: 8.68e0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 8.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 6.91407e5

GenotypeQuality
all individuals: 19268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
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GenotypeQuality
all individuals: 191
bin: 8.75e1
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GenotypeQuality
all individuals: 1373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 491
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 646
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variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.331e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.128e0

DP
type: SiteQuality
SIO_000300: 6.70227e5

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 8.56e0

GenotypeQuality
all individuals: 4625
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 1

GenotypeQuality
all individuals: 1753
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.585315408479835e-4
allele num: 7736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.224439818782907e-4
allele num: 16334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 6.75789e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.015e-1

FS
type: SiteQuality
SIO_000300: 4.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4625
bin: 2.5e0
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GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 441
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 484
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 1.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.463288521199586e-4
allele num: 7736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.261034047919294e-3
allele num: 1586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 4.285539365740174e-4
allele num: 16334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
SIO_000300: 6.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.26e0

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.015e-1

DP
type: SiteQuality
SIO_000300: 6.75789e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeQuality
all individuals: 441
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.25e1
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GenotypeQuality
all individuals: 1753
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.37e0

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 4.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.015e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

DP
type: SiteQuality
SIO_000300: 6.75789e5

GenotypeQuality
all individuals: 4157
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 6

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 3925
bin: 6.25e1
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GenotypeQuality
all individuals: 511
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GenotypeQuality
all individuals: 954
bin: 2.75e1
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GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1140
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 58

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

East Asian
type: Population
allele count: 39
allele frequency: 2.855051244509517e-2
allele num: 1366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.857072449482504e-4
allele num: 8116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.346438669718594e-4
allele num: 14854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.34249e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.78e-2

QD
type: SiteQuality
SIO_000300: 1.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 517
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 6.25e1
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GenotypeQuality
all individuals: 398
bin: 7.25e1
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GenotypeQuality
all individuals: 2770
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23671
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
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QD
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BaseQRankSum
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SIO_000300: 1.94e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 7.00770847932726e-4
allele num: 2854
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.05992085924251e-3
allele num: 14152
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 616
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South Asian
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European (Non-Finnish)
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allele num: 12546
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1996
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African
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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DP
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BaseQRankSum
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SIO_000300: -7.31e-1

QD
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MQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 11722
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1936
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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QD
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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MQ
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DP
type: SiteQuality
SIO_000300: 5.66742e5

ReadPosRankSum
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SIO_000300: 1.59e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 8.257638315441783e-4
allele num: 2422
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East Asian
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allele frequency: 0.0e0
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African
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Other
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allele num: 110
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QD
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SIO_000300: 8.68e0

DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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allele num: 5328
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Other
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allele frequency: 0.0e0
allele num: 94
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DP
type: SiteQuality
SIO_000300: 8.6475e4

MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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allele frequency: NaN
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Latino
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MQRankSum
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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East Asian
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South Asian
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Latino
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European (Finnish)
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allele num: 0
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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Latino
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MQ
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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African
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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FS
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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African
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allele num: 1944
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.136363636363636e-3
allele num: 4400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.74e-1

DP
type: SiteQuality
SIO_000300: 2.81691e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.672e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 329
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 615
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
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variant carriers: 2

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1049
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2040
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 2

East Asian
type: Population
allele count: 2
allele frequency: 3.846153846153846e-3
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.109704641350211e-3
allele num: 7110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.02880658436214e-3
allele num: 1944
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.545454545454545e-4
allele num: 4400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 9.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.672e-1

DP
type: SiteQuality
SIO_000300: 2.81691e5

GenotypeQuality
all individuals: 384
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 2.5e0
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GenotypeQuality
all individuals: 825
bin: 9.75e1
variant carriers: 22

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 203
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variant carriers: 3

GenotypeQuality
all individuals: 758
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 106
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variant carriers: 2

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 3.721161002232696e-3
allele num: 8062
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.921129503407984e-3
allele num: 2054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.854e0

MQ
type: SiteQuality
SIO_000300: 5.724e1

QD
type: SiteQuality
SIO_000300: 6.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.69e-2

DP
type: SiteQuality
SIO_000300: 2.98872e5

FS
type: SiteQuality
SIO_000300: 4.3056e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeQuality
all individuals: 829
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
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variant carriers: 1

GenotypeQuality
all individuals: 205
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variant carriers: 2

GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 5804
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GenotypeQuality
all individuals: 268
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
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GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 3
allele frequency: 1.419110690633869e-3
allele num: 2114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.070382616910723e-3
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.59e0

FS
type: SiteQuality
SIO_000300: 2.5964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

DP
type: SiteQuality
SIO_000300: 3.34946e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.42e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.715e1

VQSLOD
type: SiteQuality
SIO_000300: -2.624e0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32464
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 1018
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 7705
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265182186234818e-4
allele num: 7904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.055e0

VQSLOD
type: SiteQuality
SIO_000300: -6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.519999999999999e-2

DP
type: SiteQuality
SIO_000300: 4.47918e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

QD
type: SiteQuality
SIO_000300: 1.65e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 1

GenotypeQuality
all individuals: 1386
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 8281
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variant carriers: 0

GenotypeQuality
all individuals: 281
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.889e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.31e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 4.56661e5

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1156
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GenotypeQuality
all individuals: 31806
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GenotypeQuality
all individuals: 8981
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variant carriers: 2

GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 1018
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variant carriers: 0

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.219409282700422e-4
allele num: 2370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.004016064257028e-4
allele num: 9960
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

DP
type: SiteQuality
SIO_000300: 4.59619e5

FS
type: SiteQuality
SIO_000300: 3.548e0

QD
type: SiteQuality
SIO_000300: 1.223e1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 994
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variant carriers: 0

GenotypeQuality
all individuals: 28925
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GenotypeQuality
all individuals: 216
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variant carriers: 1

GenotypeQuality
all individuals: 820
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variant carriers: 8

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.666666666666667e-3
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.061005770816158e-3
allele num: 2426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.51e-2

DP
type: SiteQuality
SIO_000300: 4.94051e5

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

FS
type: SiteQuality
SIO_000300: 2.167e0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 304
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GenotypeQuality
all individuals: 26843
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 8455
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
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ReadPosRankSum
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

DP
type: SiteQuality
SIO_000300: 5.1151e5

GenotypeQuality
all individuals: 214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8447
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 8.330248056275454e-4
allele num: 10804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 1966
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GenotypeQuality
all individuals: 432
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GenotypeQuality
all individuals: 1017
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GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 290
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.317349492820445e-4
allele num: 15182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.117206982543641e-4
allele num: 3208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.656e0

DP
type: SiteQuality
SIO_000300: 6.41772e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.182e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.697356426618049e-5
allele num: 17552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.16e0

MQ
type: SiteQuality
SIO_000300: 5.789e1

VQSLOD
type: SiteQuality
SIO_000300: -6.589e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.069e0

FS
type: SiteQuality
SIO_000300: 1.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

DP
type: SiteQuality
SIO_000300: 6.92274e5

GenotypeQuality
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.431641923332595e-4
allele num: 9026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3020
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.824817518248175e-3
allele num: 4384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.384426517011575e-5
allele num: 22808
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.74423e5

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33265
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.096731739416539e-4
allele num: 9118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3216
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.92984e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 5.121e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 746
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.741228070175438e-4
allele num: 3648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

DP
type: SiteQuality
SIO_000300: 8.67919e5

VQSLOD
type: SiteQuality
SIO_000300: -4.407e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 7.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.61e-1

GenotypeQuality
all individuals: 355
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23550
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4858
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.479289940828402e-3
allele num: 4732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 1.839e0

QD
type: SiteQuality
SIO_000300: 7.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 9.31904e5

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2