1-185130063-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185130063
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185130063
    reference: chr 1
allele count: 2
allele frequency: 1.692333728211203e-5
allele num: 118180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.84+6A>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.84+6A>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.84+6A>T
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 5500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
hgvs: c.84+6A>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

1-185130076-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185130076
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185130076
    reference: chr 1
allele count: 28
allele frequency: 2.431273118802424e-4
allele num: 115166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.84+19T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.84+19T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.84+19T>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 221
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 170
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 28
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

1-185130083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185130083
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185130083
    reference: chr 1
allele count: 1
allele frequency: 8.811659587966797e-6
allele num: 113486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.84+26G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.84+26G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.84+26G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 536
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-185130107-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185130107
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185130107
    reference: chr 1
allele count: 1
allele frequency: 9.848335631278313e-6
allele num: 101540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.84+50C>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.84+50C>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.84+50C>T
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

1-185135654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135654
    reference: chr 1
allele count: 1
allele frequency: 8.499787505312367e-6
allele num: 117650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.85-50A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.85-50A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.85-50A>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-185135666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135666
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135666
    reference: chr 1
allele count: 1
allele frequency: 8.480037990570198e-6
allele num: 117924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.85-38G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.85-38G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.85-38G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-185135668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135668
    reference: chr 1
allele count: 1
allele frequency: 8.47371453750466e-6
allele num: 118012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.85-36G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.85-36G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 611
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

1-185135670-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135670
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135670
    reference: chr 1
allele count: 1
allele frequency: 8.463817181548878e-6
allele num: 118150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.85-34T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.85-34T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.85-34T>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/1-185135695-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135695
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135695
    reference: chr 1
allele count: 1
allele frequency: 8.338753523123364e-6
allele num: 119922
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.85-9C>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.85-9C>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.85-9C>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-185135710-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135710
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135710
    reference: chr 1
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.91A>C
  hgvsp: ENSP00000401413.1:p.Lys31Gln
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.91A>C
  hgvsp: ENSP00000356471.3:p.Lys31Gln
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.91A>C
  hgvsp: ENSP00000356470.4:p.Lys31Gln
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 175
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 198
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genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13945
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2516
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genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys31Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-185135724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135724
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135724
    reference: chr 1
allele count: 2
allele frequency: 1.656863557286057e-5
allele num: 120710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.105C>T
  hgvsp: ENST00000367501.3:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.105C>T
  hgvsp: ENST00000450350.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.105C>T
  hgvsp: ENST00000367500.4:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 18308
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 267
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genotype depth: GenotypeDepth
  all individuals: 132
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1400
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
hgvs: p.Thr35Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-185135727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135727
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135727
    reference: chr 1
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.108A>G
  hgvsp: ENST00000367501.3:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.108A>G
  hgvsp: ENST00000367500.4:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.108A>G
  hgvsp: ENST00000450350.1:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1400
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genotype depth: GenotypeDepth
  all individuals: 18297
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 198
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro36Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-185135738-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135738
    reference: chr 1
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.119C>G
  hgvsp: ENSP00000356471.3:p.Thr40Ser
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.119C>G
  hgvsp: ENSP00000401413.1:p.Thr40Ser
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.119C>G
  hgvsp: ENSP00000356470.4:p.Thr40Ser
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 611
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13965
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25710
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr40Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

1-185135745-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135745
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135745
    reference: chr 1
allele count: 43615
allele frequency: 3.606870544648617e-1
allele num: 120922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.126A>G
  hgvsp: ENST00000367501.3:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.126A>G
  hgvsp: ENST00000450350.1:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.126A>G
  hgvsp: ENST00000367500.4:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.75e1
  variant carriers: 861
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 8.25e1
  variant carriers: 2154
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.25e1
  variant carriers: 1909
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 4.25e1
  variant carriers: 1165
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 2.75e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.75e1
  variant carriers: 1506
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 6.25e1
  variant carriers: 2282
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 8.75e1
  variant carriers: 1940
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 9.25e1
  variant carriers: 1787
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 6.75e1
  variant carriers: 2424
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 2.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 9.75e1
  variant carriers: 11355
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.75e1
  variant carriers: 2195
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.75e1
  variant carriers: 2049
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.25e1
  variant carriers: 609
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.25e1
  variant carriers: 2317
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 9.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 15898
  bin: 6.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 37554
  bin: 9.75e1
  variant carriers: 35030
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 8.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 6.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.75e1
  variant carriers: 45
hgvs: p.Ser42Ser
num of homozygotes: 8086
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-185135747-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135747
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135747
    reference: chr 1
allele count: 222
allele frequency: 1.838387518839332e-3
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.128C>A
  hgvsp: ENSP00000401413.1:p.Ser43Tyr
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.128C>A
  hgvsp: ENSP00000356471.3:p.Ser43Tyr
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.128C>A
  hgvsp: ENSP00000356470.4:p.Ser43Tyr
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24516
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12045
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6068
  bin: 9.75e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser43Tyr
num of homozygotes: 1
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

1-185135752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135752
    reference: chr 1
allele count: 2
allele frequency: 1.656808655168415e-5
allele num: 120714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.133A>G
  hgvsp: ENSP00000356471.3:p.Ile45Val
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.133A>G
  hgvsp: ENSP00000401413.1:p.Ile45Val
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.133A>G
  hgvsp: ENSP00000356470.4:p.Ile45Val
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 1168
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5881
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37434
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile45Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-185135766-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135766
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135766
    reference: chr 1
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.147A>G
  hgvsp: ENST00000367501.3:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.147A>G
  hgvsp: ENST00000450350.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.147A>G
  hgvsp: ENST00000367500.4:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1986
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5874
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser49Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-185135775-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135775
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135775
    reference: chr 1
allele count: 5
allele frequency: 4.158004158004158e-5
allele num: 120250
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.156G>C
  hgvsp: ENSP00000356470.4:p.Lys52Asn
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.156G>C
  hgvsp: ENSP00000401413.1:p.Lys52Asn
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.156G>C
  hgvsp: ENSP00000356471.3:p.Lys52Asn
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
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genotype depth: GenotypeDepth
  all individuals: 644
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 11798
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genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 507
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5869
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  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 73
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genotype quality: GenotypeQuality
  all individuals: 2130
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genotype quality: GenotypeQuality
  all individuals: 850
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7444
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys52Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-185135787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135787
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135787
    reference: chr 1
allele count: 1
allele frequency: 8.355754608198667e-6
allele num: 119678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+3G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+3G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+3G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12150
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2781
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7296
  bin: 6.75e1
  variant carriers: 0
hgvs: c.165+3G>A
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-185135791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135791
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135791
    reference: chr 1
allele count: 1
allele frequency: 8.370162046337218e-6
allele num: 119472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+7G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+7G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+7G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 841
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 287
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 1955
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: c.165+7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

1-185135799-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135799
    reference: chr 1
allele count: 7
allele frequency: 5.892255892255892e-5
allele num: 118800
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+15A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+15A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+15A>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5859
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

1-185135799-ATAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135795
    reference: chr 1
allele count: 1
allele frequency: 8.417508417508417e-6
allele num: 118800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+23_165+26delCTAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+23_165+26delCTAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+23_165+26delCTAA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11469
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: ATAAC
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-185135800-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135800
    reference: chr 1
allele count: 14
allele frequency: 1.179145961425082e-4
allele num: 118730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+16T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+16T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+16T>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22422
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5865
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

1-185135803-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135803
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135803
    reference: chr 1
allele count: 1
allele frequency: 8.432556413802408e-6
allele num: 118588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+19C>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+19C>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+19C>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6556
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/1-185135805-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135805
    reference: chr 1
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+21A>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+21A>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+21A>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-185135806-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135806
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135805
    reference: chr 1
allele count: 1
allele frequency: 8.448943037226043e-6
allele num: 118358
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+23delC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+23delC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+23delC
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 9588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5851
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: AC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

1-185135809-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135809
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135809
    reference: chr 1
allele count: 1
allele frequency: 8.458376330079678e-6
allele num: 118226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+25A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+25A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+25A>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30406
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-185135822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135822
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135822
    reference: chr 1
allele count: 1
allele frequency: 8.535627710061798e-6
allele num: 117156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+38G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+38G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+38G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/1-185135833-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135833
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135833
    reference: chr 1
allele count: 1
allele frequency: 8.690815546130848e-6
allele num: 115064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+49A>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+49A>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+49A>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-185135834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135834
    reference: chr 1
allele count: 1
allele frequency: 8.709132396230688e-6
allele num: 114822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+50A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+50A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+50A>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5430
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

1-185135836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185135836
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185135836
    reference: chr 1
allele count: 2
allele frequency: 1.757376588229092e-5
allele num: 113806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.165+52C>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.165+52C>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.165+52C>T
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

1-185137448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137448
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 55606
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-24G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-24G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-24G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

1-185137449-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137449
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137449
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 56688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-23T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-23T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-23T>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-185137451-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137451
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137451
    reference: chr 1
allele count: 1
allele frequency: 1.742585299550413e-5
allele num: 57386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-21T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-21T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-21T>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10922
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-185137452-C-CCCAAATGATAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 57638
alternate allele: CCCAAATGATAGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13370
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

1-185137452-C-CCTAAATGATAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
allele count: 142
allele frequency: 2.463652451507686e-3
allele num: 57638
alternate allele: CCTAAATGATAGA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.5e0
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13370
  bin: 7.5e0
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 12206
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4748
  bin: 7.5e0
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 2.5e0
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8133
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 1.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 9.75e1
  variant carriers: 80
num of homozygotes: 5
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

1-185137453-C-CTAAATGATAGACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137466
    reference: chr 1
allele count: 112
allele frequency: 2.042155933192327e-3
allele num: 54844
alternate allele: CTAAATGATAGACT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12809
  bin: 7.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.5e0
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6262
  bin: 2.5e0
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 1.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 7.5e0
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7951
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 9.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.25e1
  variant carriers: 3
num of homozygotes: 4
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

1-185137453-C-CTAAATGATAGACTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137467
    reference: chr 1
allele count: 1
allele frequency: 1.823353511778864e-5
allele num: 54844
alternate allele: CTAAATGATAGACTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 12809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

1-185137454-T-TAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137457
    reference: chr 1
allele count: 58
allele frequency: 8.780428727140608e-4
allele num: 66056
alternate allele: TAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-18_166-17insAAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-18_166-17insAAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-18_166-17insAAA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.5e0
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 1.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 7.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.5e0
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

1-185137454-T-TAAATGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137460
    reference: chr 1
allele count: 75
allele frequency: 1.135400266440596e-3
allele num: 66056
alternate allele: TAAATGA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-18_166-17insAAATGA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-18_166-17insAAATGA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-18_166-17insAAATGA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 7.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.5e0
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12622
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.5e0
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 7
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-185137454-T-TAAATGATAGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137465
    reference: chr 1
allele count: 15613
allele frequency: 2.363600581324936e-1
allele num: 66056
alternate allele: TAAATGATAGAC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 509
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.75e1
  variant carriers: 2611
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 7.5e0
  variant carriers: 4781
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 987
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 1588
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 688
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.5e0
  variant carriers: 3126
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 611
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 947
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 1.25e1
  variant carriers: 3612
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 407
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 217
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 846
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 507
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 1000
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 590
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 982
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.75e1
  variant carriers: 355
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.5e0
  variant carriers: 535
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 824
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 673
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 389
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 937
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 744
genotype quality: GenotypeQuality
  all individuals: 12622
  bin: 9.75e1
  variant carriers: 11091
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 224
num of homozygotes: 2682
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-185137454-T-TAAATGATAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
allele count: 2
allele frequency: 3.027734043841589e-5
allele num: 66056
alternate allele: TAAATGATAGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12622
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-185137454-T-TAAATGATAGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137465
    reference: chr 1
allele count: 3
allele frequency: 4.541601065762383e-5
allele num: 66056
alternate allele: TAAATGATAGAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12622
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

1-185137454-TTTTTTTATTTATTTCAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137437
    reference: chr 1
allele count: 68
allele frequency: 1.02942957490614e-3
allele num: 66056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 7.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 12622
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 6
hgvs: c.166-17_166-1delTTTTTTATTTATTTCAG
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: TTTTTTTATTTATTTCAG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-185137455-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137455
    reference: chr 1
allele count: 1
allele frequency: 3.27653997378768e-5
allele num: 30520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-17T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-17T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-17T>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

1-185137455-T-TGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137457
    reference: chr 1
allele count: 1
allele frequency: 3.27653997378768e-5
allele num: 30520
alternate allele: TGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-17_166-16insGA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-17_166-16insGA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-17_166-16insGA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-185137455-T-TGATAGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137462
    reference: chr 1
allele count: 1
allele frequency: 3.27653997378768e-5
allele num: 30520
alternate allele: TGATAGAC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-17_166-16insGATAGAC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-17_166-16insGATAGAC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-17_166-16insGATAGAC
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

1-185137456-T-TAGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137460
    reference: chr 1
allele count: 1
allele frequency: 2.34763827589445e-5
allele num: 42596
alternate allele: TAGAC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-16_166-15insAGAC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-16_166-15insAGAC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-16_166-15insAGAC
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15004
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2385
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-185137457-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137457
    reference: chr 1
allele count: 1
allele frequency: 2.281646436068267e-5
allele num: 43828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-15T>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-15T>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-15T>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7932
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
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genotype quality: GenotypeQuality
  all individuals: 229
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genotype quality: GenotypeQuality
  all individuals: 393
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-185137458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137458
    reference: chr 1
allele count: 1
allele frequency: 1.461176539349484e-5
allele num: 68438
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-14T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-14T>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-14T>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

1-185137458-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137458
    reference: chr 1
allele count: 2
allele frequency: 2.922353078698968e-5
allele num: 68438
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-14T>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-14T>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-14T>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9186
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-185137459-TTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137459
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137457
    reference: chr 1
allele count: 48
allele frequency: 1.074017721292401e-3
allele num: 44692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-11_166-10delAT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-11_166-10delAT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-11_166-10delAT
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 7.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6838
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8605
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13966
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 9.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 2
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: TTA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-185137460-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137459
    reference: chr 1
allele count: 1415
allele frequency: 2.986744343127322e-2
allele num: 47376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-11delA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-11delA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-11delA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 2.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.5e0
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 1.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 7.5e0
  variant carriers: 655
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 1.75e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 4.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 1.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 2.75e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 8873
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 7110
  bin: 2.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 12700
  bin: 2.5e0
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.5e0
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 253
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  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 9.75e1
  variant carriers: 1078
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 3.25e1
  variant carriers: 100
num of homozygotes: 114
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: TA
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-185137461-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
allele count: 4
allele frequency: 7.672241829062452e-5
allele num: 52136
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-11A>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-11A>C
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-11A>C
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8567
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 15734
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-185137461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
allele count: 3
allele frequency: 5.754181371796839e-5
allele num: 52136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-11A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-11A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-11A>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15734
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-185137461-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
allele count: 14040
allele frequency: 2.692956882000921e-1
allele num: 52136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-11A>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-11A>T
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-11A>T
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 7.5e0
  variant carriers: 3614
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 1023
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 1.25e1
  variant carriers: 2789
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 403
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 1.75e1
  variant carriers: 2164
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 577
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.5e0
  variant carriers: 1158
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 402
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 2.25e1
  variant carriers: 1479
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 9.75e1
  variant carriers: 664
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 816
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.75e1
  variant carriers: 753
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 602
genotype quality: GenotypeQuality
  all individuals: 15734
  bin: 2.5e0
  variant carriers: 208
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 727
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.75e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 9.75e1
  variant carriers: 8615
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 8567
  bin: 6.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 453
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 366
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 878
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 429
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 554
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 162
num of homozygotes: 2870
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-185137461-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137459
    reference: chr 1
allele count: 1
allele frequency: 1.918060457265613e-5
allele num: 52136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-9_166-8delTT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-9_166-8delTT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-9_166-8delTT
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
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genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15734
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: ATT
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-185137463-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137463
    reference: chr 1
allele count: 5
allele frequency: 1.091464745688714e-4
allele num: 45810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-9T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-9T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-9T>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9227
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17106
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-185137463-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
allele count: 4
allele frequency: 8.731717965509715e-5
allele num: 45810
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-9_166-8insA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-9_166-8insA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-9_166-8insA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-185137463-T-TTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137465
    reference: chr 1
allele count: 1
allele frequency: 2.182929491377429e-5
allele num: 45810
alternate allele: TTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-7_166-6dupAT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-7_166-6dupAT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-7_166-6dupAT
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-185137464-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137466
    reference: chr 1
allele count: 15569
allele frequency: 2.843029838208977e-1
allele num: 54762
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-7_166-6insAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-7_166-6insAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-7_166-6insAA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 2169
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 743
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 1.25e1
  variant carriers: 2957
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 7.5e0
  variant carriers: 3072
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.25e1
  variant carriers: 1609
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 1167
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 597
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 876
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 289
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 297
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 870
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 831
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 350
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 796
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 607
genotype quality: GenotypeQuality
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 172
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 10436
  bin: 9.75e1
  variant carriers: 8914
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 650
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 9087
  bin: 6.25e1
  variant carriers: 140
hgvs: c.166-7_166-6insAA
num of homozygotes: 3550
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

1-185137464-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
allele count: 13
allele frequency: 2.373908914941017e-4
allele num: 54762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-8T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-8T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-8T>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9087
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10436
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
hgvs: c.166-8T>A
num of homozygotes: 1
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-185137464-T-TAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137467
    reference: chr 1
allele count: 12
allele frequency: 2.191300536868632e-4
allele num: 54762
alternate allele: TAAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-7_166-6insAAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-7_166-6insAAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-7_166-6insAAA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10436
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
hgvs: c.166-7_166-6insAAA
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

1-185137464-T-TTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137466
    reference: chr 1
allele count: 7
allele frequency: 1.278258646506702e-4
allele num: 54762
alternate allele: TTA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-8_166-7insTA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-8_166-7insTA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-8_166-7insTA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10436
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
hgvs: c.166-8_166-7insTA
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

1-185137464-T-TTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137467
    reference: chr 1
allele count: 551
allele frequency: 1.006172163178847e-2
allele num: 54762
alternate allele: TTAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-8_166-7insTAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-8_166-7insTAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-8_166-7insTAA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 7.5e0
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 1.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 9087
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10436
  bin: 9.75e1
  variant carriers: 372
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 24
hgvs: c.166-8_166-7insTAA
num of homozygotes: 66
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

1-185137464-T-TTTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137468
    reference: chr 1
allele count: 11
allele frequency: 2.008692158796246e-4
allele num: 54762
alternate allele: TTTAA
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-8_166-7insTTAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-8_166-7insTTAA
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-8_166-7insTTAA
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10436
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
hgvs: c.166-8_166-7insTTAA
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-185137465-A-AAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137465
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137467
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 33872
alternate allele: AAC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-7_166-6insAC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-7_166-6insAC
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-7_166-6insAC
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22875
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
hgvs: c.166-7_166-6insAC
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

1-185137465-A-AAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137465
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137467
    reference: chr 1
allele count: 1
allele frequency: 2.952290977798772e-5
allele num: 33872
alternate allele: AAT
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-7_166-6insAT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-7_166-6insAT
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-7_166-6insAT
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 635
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 913
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22875
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 193
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genotype quality: GenotypeQuality
  all individuals: 9440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 1
hgvs: c.166-7_166-6insAT
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-185137466-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137466
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137466
    reference: chr 1
allele count: 1
allele frequency: 1.108377114229345e-5
allele num: 90222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-6T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-6T>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-6T>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 830
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9709
  bin: 2.25e1
  variant carriers: 0
hgvs: c.166-6T>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/1-185137469-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137469
    reference: chr 1
allele count: 1
allele frequency: 1.992428770671449e-5
allele num: 50190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-3C>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-3C>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-3C>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
hgvs: c.166-3C>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-185137470-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137470
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137470
    reference: chr 1
allele count: 2
allele frequency: 3.755586434821797e-5
allele num: 53254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-2A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-2A>G
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-2A>G
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
hgvs: c.166-2A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

1-185137471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137471
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137471
    reference: chr 1
allele count: 4
allele frequency: 6.773920406435225e-5
allele num: 59050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.166-1G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.166-1G>A
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.166-1G>A
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17644
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.75e1
  variant carriers: 1
hgvs: c.166-1G>A
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

1-185137476-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137476
    reference: chr 1
allele count: 64
allele frequency: 9.01357669990423e-4
allele num: 71004
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.170C>G
  hgvsp: ENSP00000356470.4:p.Ser57Ter
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.170C>G
  hgvsp: ENSP00000401413.1:p.Ser57Ter
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.170C>G
  hgvsp: ENSP00000356471.3:p.Ser57Ter
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15830
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 17039
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 12497
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 8758
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.25e1
  variant carriers: 6
hgvs: p.Ser57Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

1-185137490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137490
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137490
    reference: chr 1
allele count: 2
allele frequency: 2.036908787224508e-5
allele num: 98188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.184G>A
  hgvsp: ENSP00000401413.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.184G>A
  hgvsp: ENSP00000356471.3:p.Val62Ile
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.184G>A
  hgvsp: ENSP00000356470.4:p.Val62Ile
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
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genotype quality: GenotypeQuality
  all individuals: 965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val62Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-185137492-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137492
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137492
    reference: chr 1
allele count: 1
allele frequency: 1.00144207659029e-5
allele num: 99856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.186T>C
  hgvsp: ENST00000450350.1:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.186T>C
  hgvsp: ENST00000367500.4:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.186T>C
  hgvsp: ENST00000367501.3:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31194
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val62Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-185137502-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 185137502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 185137502
    reference: chr 1
allele count: 118
allele frequency: 1.169938528653579e-3
allele num: 100860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356471
  ensembl transcript: ENST00000367501
  gene symbol: SWT1
  hgvsc: ENST00000367501.3:c.196A>C
  hgvsp: ENSP00000356471.3:p.Asn66His
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000356470
  ensembl transcript: ENST00000367500
  gene symbol: SWT1
  hgvsc: ENST00000367500.4:c.196A>C
  hgvsp: ENSP00000356470.4:p.Asn66His
  variant of: http://identifiers.org/hgnc/16785
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116668
  ensembl protein: ENSP00000401413
  ensembl transcript: ENST00000450350
  gene symbol: SWT1
  hgvsc: ENST00000450350.1:c.196A>C
  hgvsp: ENSP00000401413.1:p.Asn66His
  variant of: http://identifiers.org/hgnc/16785
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25756
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11558
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 902
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  variant carriers: 0
hgvs: p.Asn66His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: A

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.093580819798917e-5
allele num: 64650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.582e0

VQSLOD
type: SiteQuality
SIO_000300: -5.863e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
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SIO_000300: 1.424e1

DP
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SIO_000300: 1.682305e6

FS
type: SiteQuality
SIO_000300: 8.583e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 26
allele frequency: 2.626262626262626e-3
allele num: 9900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.177629488401653e-5
allele num: 62940
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.844e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

ClippingRankSum
type: SiteQuality
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DP
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614882759511659e-5
allele num: 61924
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.069e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.490633e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

GenotypeQuality
all individuals: 4296
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54610
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.296155e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1519
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536806516059628e-5
allele num: 65070
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.863528e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

QD
type: SiteQuality
SIO_000300: 1.788e1

VQSLOD
type: SiteQuality
SIO_000300: -6.206e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 1548
bin: 8.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65210
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

DP
type: SiteQuality
SIO_000300: 1.900595e6

QD
type: SiteQuality
SIO_000300: 1.448e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

FS
type: SiteQuality
SIO_000300: 7.169e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.529e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

GenotypeQuality
all individuals: 2386
bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

East Asian
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allele frequency: 1.180916391119509e-4
allele num: 8468
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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SIO_000300: -2.21e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.907328e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.530830935031535e-5
allele num: 65324
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.914516e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
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FS
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele num: 8628
num of homozygotes: 0

Other
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European (Finnish)
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African
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele num: 16442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.77e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.526e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
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South Asian
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allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

Latino
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allele num: 11534
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8636
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.973041e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
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East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

FS
type: SiteQuality
SIO_000300: 7.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

DP
type: SiteQuality
SIO_000300: 1.973399e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.118e1

FS
type: SiteQuality
SIO_000300: 4.982e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
type: SiteQuality
SIO_000300: 1.974304e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 28

East Asian
type: Population
allele count: 1773
allele frequency: 2.052083333333333e-1
allele num: 8640
num of homozygotes: 192

European (Non-Finnish)
type: Population
allele count: 23985
allele frequency: 3.604598737601443e-1
allele num: 66540
num of homozygotes: 4321

Other
type: Population
allele count: 326
allele frequency: 3.598233995584989e-1
allele num: 906
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Latino
type: Population
allele count: 4949
allele frequency: 4.285590578455144e-1
allele num: 11548
num of homozygotes: 1081

European (Finnish)
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allele count: 2144
allele frequency: 3.24455205811138e-1
allele num: 6608
num of homozygotes: 371

African
type: Population
allele count: 4162
allele frequency: 4.087605578471813e-1
allele num: 10182
num of homozygotes: 830

South Asian
type: Population
allele count: 6276
allele frequency: 3.804097466359559e-1
allele num: 16498
num of homozygotes: 1229

DP
type: SiteQuality
SIO_000300: 3.799816e6

QD
type: SiteQuality
SIO_000300: 1.718e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
all individuals: 7544
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.040763226366002e-3
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 206
allele frequency: 2.037989711119905e-2
allele num: 10108
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.418e0

DP
type: SiteQuality
SIO_000300: 1.894257e6

GenotypeQuality
all individuals: 7567
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008061605101673e-5
allele num: 66488
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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QD
type: SiteQuality
SIO_000300: 1.582e1

DP
type: SiteQuality
SIO_000300: 1.881437e6

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeQuality
all individuals: 1162
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.288e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

DP
type: SiteQuality
SIO_000300: 1.87649e6

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 2818
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.03554938588285e-5
allele num: 66274
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.594e-1

FS
type: SiteQuality
SIO_000300: 3.182e0

QD
type: SiteQuality
SIO_000300: 2.594e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.870521e6

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65976
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

VQSLOD
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.853397e6

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
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Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
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East Asian
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 9.471e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.738783649052842e-4
allele num: 16048
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
num of homozygotes: 0

African
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allele count: 0
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allele num: 9856
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
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South Asian
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.622e0

DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 14
allele frequency: 8.733624454148472e-4
allele num: 16030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65484
num of homozygotes: 0

African
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allele count: 0
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allele num: 9850
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65412
num of homozygotes: 0

Latino
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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East Asian
type: Population
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allele frequency: 1.180358829084042e-4
allele num: 8472
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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QD
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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Other
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East Asian
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African
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European (Non-Finnish)
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QD
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VQSLOD
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ClippingRankSum
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MQ
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DP
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Latino
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Other
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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MQ
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QD
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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Other
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African
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Non-Finnish)
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African
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Other
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Latino
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East Asian
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European (Finnish)
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VQSLOD
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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South Asian
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East Asian
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African
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Other
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European (Non-Finnish)
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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QD
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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InbreedingCoeff
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QD
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DP
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MQ
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FS
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VQSLOD
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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Other
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Latino
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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East Asian
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FS
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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East Asian
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Latino
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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South Asian
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Other
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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MQ
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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European (Finnish)
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Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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FS
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MQ
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QD
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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European (Finnish)
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East Asian
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Latino
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Other
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European (Non-Finnish)
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.145e1

FS
type: SiteQuality
SIO_000300: 6.53e0

MQRankSum
type: SiteQuality
SIO_000300: -1.736e0

DP
type: SiteQuality
SIO_000300: 1.180241e6

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

South Asian
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allele frequency: 7.359705611775528e-4
allele num: 10870
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 9.054690329590728e-4
allele num: 5522
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Latino
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allele frequency: 8.692628650904034e-4
allele num: 5752
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African
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allele count: 2
allele frequency: 4.180602006688963e-4
allele num: 4784
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European (Finnish)
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allele count: 2
allele frequency: 4.789272030651341e-4
allele num: 4176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 1.016968851696885e-3
allele num: 34416
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.865671641791045e-3
allele num: 536
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DP
type: SiteQuality
SIO_000300: 1.194167e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 4.353e0

QD
type: SiteQuality
SIO_000300: 5.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.647e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.178e-1

MQ
type: SiteQuality
SIO_000300: 5.203e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 17

Latino
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allele count: 10
allele frequency: 1.738525730180807e-3
allele num: 5752
num of homozygotes: 0

European (Finnish)
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allele count: 6
allele frequency: 1.436781609195402e-3
allele num: 4176
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European (Non-Finnish)
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allele count: 34
allele frequency: 9.879125987912599e-4
allele num: 34416
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South Asian
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allele frequency: 1.195952161913524e-3
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East Asian
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allele frequency: 9.054690329590728e-4
allele num: 5522
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African
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allele count: 6
allele frequency: 1.254180602006689e-3
allele num: 4784
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Other
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allele frequency: 1.865671641791045e-3
allele num: 536
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 4.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.647e0

QD
type: SiteQuality
SIO_000300: 5.39e0

MQ
type: SiteQuality
SIO_000300: 5.203e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.178e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 1.194167e6

African
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allele frequency: 5.516304347826086e-1
allele num: 4784
num of homozygotes: 860

European (Non-Finnish)
type: Population
allele count: 7108
allele frequency: 2.065318456531846e-1
allele num: 34416
num of homozygotes: 986

Latino
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allele count: 1300
allele frequency: 2.260083449235049e-1
allele num: 5752
num of homozygotes: 131

East Asian
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allele count: 1003
allele frequency: 1.8163708801159e-1
allele num: 5522
num of homozygotes: 92

South Asian
type: Population
allele count: 2565
allele frequency: 2.359705611775529e-1
allele num: 10870
num of homozygotes: 495

Other
type: Population
allele count: 139
allele frequency: 2.593283582089552e-1
allele num: 536
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European (Finnish)
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allele count: 859
allele frequency: 2.056992337164751e-1
allele num: 4176
num of homozygotes: 91

MQ
type: SiteQuality
SIO_000300: 5.203e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.178e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 4.353e0

MQRankSum
type: SiteQuality
SIO_000300: -2.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 5.39e0

DP
type: SiteQuality
SIO_000300: 1.194167e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10870
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.738525730180807e-4
allele num: 5752
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4784
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.905625290562529e-5
allele num: 34416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
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VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -2.647e0

DP
type: SiteQuality
SIO_000300: 1.194167e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.178e-1

MQ
type: SiteQuality
SIO_000300: 5.203e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 4.353e0

QD
type: SiteQuality
SIO_000300: 5.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

European (Non-Finnish)
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allele count: 1
allele frequency: 2.905625290562529e-5
allele num: 34416
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.810938065918146e-4
allele num: 5522
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 536
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4176
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African
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allele count: 1
allele frequency: 2.090301003344482e-4
allele num: 4784
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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allele num: 5752
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.178e-1

DP
type: SiteQuality
SIO_000300: 1.194167e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.39e0

MQRankSum
type: SiteQuality
SIO_000300: -2.647e0

MQ
type: SiteQuality
SIO_000300: 5.203e1

FS
type: SiteQuality
SIO_000300: 4.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 16
allele frequency: 1.471941122355106e-3
allele num: 10870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.197318007662835e-3
allele num: 4176
num of homozygotes: 0

African
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allele count: 8
allele frequency: 1.672240802675585e-3
allele num: 4784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 8.716875871687587e-4
allele num: 34416
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.810938065918146e-4
allele num: 5522
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.216968011126565e-3
allele num: 5752
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Other
type: Population
allele count: 1
allele frequency: 1.865671641791045e-3
allele num: 536
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.178e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 5.39e0

FS
type: SiteQuality
SIO_000300: 4.353e0

MQ
type: SiteQuality
SIO_000300: 5.203e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.647e0

DP
type: SiteQuality
SIO_000300: 1.194167e6

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 7272
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 3.663003663003663e-4
allele num: 2730
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.873e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

MQ
type: SiteQuality
SIO_000300: 5.445e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.433e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.519e0

DP
type: SiteQuality
SIO_000300: 1.178334e6

FS
type: SiteQuality
SIO_000300: 1.34e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.992825827022718e-4
allele num: 5018
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 252
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17516
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 668
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MQRankSum
type: SiteQuality
SIO_000300: -1.519e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

FS
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.873e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: -2.433e-1

DP
type: SiteQuality
SIO_000300: 1.178334e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.51e-1

MQ
type: SiteQuality
SIO_000300: 5.445e1

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 4.336513443191674e-4
allele num: 2306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 668
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17516
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 252
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.519e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.51e-1

MQ
type: SiteQuality
SIO_000300: 5.445e1

VQSLOD
type: SiteQuality
SIO_000300: -2.433e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 350
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East Asian
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South Asian
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allele count: 1
allele frequency: 1.447178002894356e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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DP
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.690000000000001e-2

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.088641753209584e-5
allele num: 24458
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3572
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2762
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African
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South Asian
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allele frequency: 0.0e0
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Other
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allele num: 354
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East Asian
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allele frequency: 0.0e0
allele num: 3792
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.32e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37406
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Other
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East Asian
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South Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 2.344116268166901e-4
allele num: 4266
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.673367908891622e-5
allele num: 37406
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African
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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FS
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

Other
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East Asian
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allele count: 5
allele frequency: 1.293995859213251e-3
allele num: 3864
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African
type: Population
allele count: 3
allele frequency: 1.641137855579869e-3
allele num: 1828
num of homozygotes: 1

Latino
type: Population
allele count: 9
allele frequency: 2.465753424657534e-3
allele num: 3650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 7.189072609633358e-4
allele num: 2782
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.385041551246537e-3
allele num: 7220
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 7.602432778489117e-4
allele num: 24992
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.504e0

MQ
type: SiteQuality
SIO_000300: 5.206e1

DP
type: SiteQuality
SIO_000300: 1.197175e6

FS
type: SiteQuality
SIO_000300: 3.761e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 22

South Asian
type: Population
allele count: 267
allele frequency: 3.477468090648606e-2
allele num: 7678
num of homozygotes: 31

European (Finnish)
type: Population
allele count: 43
allele frequency: 1.488919667590028e-2
allele num: 2888
num of homozygotes: 1

Latino
type: Population
allele count: 200
allele frequency: 5.055611729019211e-2
allele num: 3956
num of homozygotes: 16

Other
type: Population
allele count: 9
allele frequency: 2.356020942408377e-2
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 657
allele frequency: 2.499429354028761e-2
allele num: 26286
num of homozygotes: 34

East Asian
type: Population
allele count: 87
allele frequency: 2.147087857847976e-2
allele num: 4052
num of homozygotes: 3

African
type: Population
allele count: 152
allele frequency: 7.122774133083412e-2
allele num: 2134
num of homozygotes: 29

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

MQ
type: SiteQuality
SIO_000300: 5.006e1

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 1.195441e6

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.075962986873252e-4
allele num: 27882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.46669955599408e-4
allele num: 4054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.245517e6

FS
type: SiteQuality
SIO_000300: 6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e0

MQ
type: SiteQuality
SIO_000300: 5.049e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.084e-1

QD
type: SiteQuality
SIO_000300: 1.792e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.83e-1

GenotypeQuality
all individuals: 8567
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.361832782239018e-4
allele num: 4234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.586543289577505e-5
allele num: 27882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.46669955599408e-4
allele num: 4054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.084e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.049e1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e0

DP
type: SiteQuality
SIO_000300: 1.245517e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

FS
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.83e-1

QD
type: SiteQuality
SIO_000300: 1.792e1

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 253

African
type: Population
allele count: 2610
allele frequency: 6.438085841144549e-1
allele num: 4054
num of homozygotes: 879

South Asian
type: Population
allele count: 2141
allele frequency: 2.712873796249367e-1
allele num: 7892
num of homozygotes: 495

East Asian
type: Population
allele count: 919
allele frequency: 2.15121722846442e-1
allele num: 4272
num of homozygotes: 135

Latino
type: Population
allele count: 1189
allele frequency: 2.808219178082192e-1
allele num: 4234
num of homozygotes: 202

European (Finnish)
type: Population
allele count: 794
allele frequency: 2.360285374554102e-1
allele num: 3364
num of homozygotes: 121

Other
type: Population
allele count: 126
allele frequency: 2.876712328767123e-1
allele num: 438
num of homozygotes: 26

European (Non-Finnish)
type: Population
allele count: 6261
allele frequency: 2.245534753604476e-1
allele num: 27882
num of homozygotes: 1012

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.049e1

DP
type: SiteQuality
SIO_000300: 1.245517e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.792e1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.084e-1

GenotypeQuality
all individuals: 405
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.586543289577505e-5
allele num: 27882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.049e1

QD
type: SiteQuality
SIO_000300: 1.792e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.084e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.83e-1

DP
type: SiteQuality
SIO_000300: 1.245517e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

GenotypeQuality
all individuals: 583
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.688167909587145e-5
allele num: 26014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.091703056768559e-3
allele num: 1832
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.453911020645536e-4
allele num: 6878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
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MQRankSum
type: SiteQuality
SIO_000300: -1.909e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.568e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.424e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

DP
type: SiteQuality
SIO_000300: 1.244433e6

QD
type: SiteQuality
SIO_000300: 9.57e0

GenotypeQuality
all individuals: 353
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.091703056768559e-3
allele num: 1832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.688167909587145e-5
allele num: 26014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.244433e6

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.909e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.568e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.424e-1

QD
type: SiteQuality
SIO_000300: 9.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.616431187859759e-4
allele num: 3822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.568e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 9.57e0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.424e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.909e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

DP
type: SiteQuality
SIO_000300: 1.244433e6

GenotypeQuality
all individuals: 989
bin: 3.75e1
variant carriers: 515

Other
type: Population
allele count: 117
allele frequency: 2.671232876712329e-1
allele num: 438
num of homozygotes: 22

African
type: Population
allele count: 2870
allele frequency: 6.6682156133829e-1
allele num: 4304
num of homozygotes: 1041

Latino
type: Population
allele count: 1493
allele frequency: 3.17524457677584e-1
allele num: 4702
num of homozygotes: 308

European (Finnish)
type: Population
allele count: 836
allele frequency: 2.453051643192488e-1
allele num: 3408
num of homozygotes: 149

South Asian
type: Population
allele count: 2173
allele frequency: 2.736086628053387e-1
allele num: 7942
num of homozygotes: 515

East Asian
type: Population
allele count: 1007
allele frequency: 2.259874326750449e-1
allele num: 4456
num of homozygotes: 181

European (Non-Finnish)
type: Population
allele count: 7073
allele frequency: 2.396652209270805e-1
allele num: 29512
num of homozygotes: 1334

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.379e0

MQRankSum
type: SiteQuality
SIO_000300: -2.415e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.754e-1

FS
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 1.314829e6

QD
type: SiteQuality
SIO_000300: 1.666e1

MQ
type: SiteQuality
SIO_000300: 5.232e1

GenotypeQuality
all individuals: 1580
bin: 2.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 9.293680297397769e-4
allele num: 4304
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.371916508538899e-4
allele num: 29512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.415e0

DP
type: SiteQuality
SIO_000300: 1.314829e6

MQ
type: SiteQuality
SIO_000300: 5.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 6.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.754e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.379e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.666e1

GenotypeQuality
all individuals: 341
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.710761724044456e-4
allele num: 29512
num of homozygotes: 1

Latino
type: Population
allele count: 2
allele frequency: 4.253509145044662e-4
allele num: 4702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.314829e6

MQRankSum
type: SiteQuality
SIO_000300: -2.415e0

QD
type: SiteQuality
SIO_000300: 1.666e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.379e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

FS
type: SiteQuality
SIO_000300: 6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.232e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.754e-1

GenotypeQuality
all individuals: 1446
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.694226077527785e-4
allele num: 29512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.126754572522331e-4
allele num: 4702
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.314829e6

QD
type: SiteQuality
SIO_000300: 1.666e1

MQ
type: SiteQuality
SIO_000300: 5.232e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.379e0

FS
type: SiteQuality
SIO_000300: 6.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.754e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.415e0

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 12

Other
type: Population
allele count: 10
allele frequency: 2.28310502283105e-2
allele num: 438
num of homozygotes: 2

East Asian
type: Population
allele count: 54
allele frequency: 1.211849192100539e-2
allele num: 4456
num of homozygotes: 5

South Asian
type: Population
allele count: 89
allele frequency: 1.120624527826744e-2
allele num: 7942
num of homozygotes: 9

Latino
type: Population
allele count: 85
allele frequency: 1.807741386643981e-2
allele num: 4702
num of homozygotes: 10

African
type: Population
allele count: 70
allele frequency: 1.62639405204461e-2
allele num: 4304
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European (Finnish)
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allele count: 16
allele frequency: 4.694835680751174e-3
allele num: 3408
num of homozygotes: 2

European (Non-Finnish)
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allele count: 227
allele frequency: 7.691786391976145e-3
allele num: 29512
num of homozygotes: 21

DP
type: SiteQuality
SIO_000300: 1.314829e6

MQ
type: SiteQuality
SIO_000300: 5.232e1

QD
type: SiteQuality
SIO_000300: 1.666e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.379e0

MQRankSum
type: SiteQuality
SIO_000300: -2.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.754e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

FS
type: SiteQuality
SIO_000300: 6.42e-1

GenotypeQuality
all individuals: 9087
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

African
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allele frequency: 2.323420074349442e-4
allele num: 4304
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.518257365902795e-4
allele num: 7942
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 2.371916508538899e-4
allele num: 29512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
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MQRankSum
type: SiteQuality
SIO_000300: -2.415e0

QD
type: SiteQuality
SIO_000300: 1.666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.754e-1

FS
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.232e1

DP
type: SiteQuality
SIO_000300: 1.314829e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.379e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 732
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2068
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.808e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.99e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 1.313349e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 681
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.108817819556554e-5
allele num: 19574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.99e-2

DP
type: SiteQuality
SIO_000300: 1.313349e6

MQ
type: SiteQuality
SIO_000300: 4.808e1

GenotypeQuality
all individuals: 1495
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088467482561296e-5
allele num: 47882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8896
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 3.56e0

MQRankSum
type: SiteQuality
SIO_000300: -2.516e0

MQ
type: SiteQuality
SIO_000300: 5.782e1

VQSLOD
type: SiteQuality
SIO_000300: -1.403e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 7.866e0

DP
type: SiteQuality
SIO_000300: 1.351528e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.515927149989452e-5
allele num: 28442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1726
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.853e0

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

DP
type: SiteQuality
SIO_000300: 1.358893e6

MQ
type: SiteQuality
SIO_000300: 5.567e1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.73e-2

FS
type: SiteQuality
SIO_000300: 1.983e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

GenotypeQuality
all individuals: 1592
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1890
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.322700691121744e-5
allele num: 30096
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

DP
type: SiteQuality
SIO_000300: 1.353868e6

VQSLOD
type: SiteQuality
SIO_000300: -1.637e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.65e-2

QD
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 2.093e0

MQ
type: SiteQuality
SIO_000300: 5.642e1

MQRankSum
type: SiteQuality
SIO_000300: -2.012e0

GenotypeQuality
all individuals: 536
bin: 5.25e1
variant carriers: 0

African
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allele count: 2
allele frequency: 8.532423208191126e-4
allele num: 2344
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 1
allele frequency: 2.272727272727273e-3
allele num: 440
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.960331557134399e-4
allele num: 3378
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5318
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

DP
type: SiteQuality
SIO_000300: 1.339459e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQ
type: SiteQuality
SIO_000300: 5.336e1

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.819e-1

FS
type: SiteQuality
SIO_000300: 5.042e0

MQRankSum
type: SiteQuality
SIO_000300: -1.952e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 5

East Asian
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allele count: 1
allele frequency: 1.591343093570974e-4
allele num: 6284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 7.124319373059895e-4
allele num: 39302
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.845018450184502e-3
allele num: 542
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European (Finnish)
type: Population
allele count: 5
allele frequency: 1.225490196078431e-3
allele num: 4080
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 8.933889219773674e-4
allele num: 6716
num of homozygotes: 0

South Asian
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allele count: 14
allele frequency: 1.30475302889096e-3
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African
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allele count: 9
allele frequency: 2.686567164179104e-3
allele num: 3350
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DP
type: SiteQuality
SIO_000300: 1.398671e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.659e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.847e0

VQSLOD
type: SiteQuality
SIO_000300: -2.727e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.791e1

QD
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 1142
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.819563805813376e-5
allele num: 52362
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South Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.816000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.419718e6

QD
type: SiteQuality
SIO_000300: 9.57e0

MQ
type: SiteQuality
SIO_000300: 5.772e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
allele num: 8028
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53276
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African
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allele count: 1
allele frequency: 1.300728407908429e-4
allele num: 7688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.423226e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.127e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.62e-1

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 116
allele frequency: 7.924579860636698e-3
allele num: 14638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.855356413967123e-5
allele num: 53898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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African
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